BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471993
Length=505
Score E
Sequences producing significant alignments: (Bits) Value
AT1G17800.1 | Symbols: ENODL22, AtENODL22 | early nodulin-like ... 721 0.0
> AT1G17800.1 | Symbols: ENODL22, AtENODL22 | early nodulin-like
protein 22 | chr1:6128823-6129508 FORWARD LENGTH=545
Length=545
Score = 721 bits (390), Expect = 0.0
Identities = 439/463 (95%), Gaps = 2/463 (0%)
Strand=Plus/Plus
Query 1 CAAATGGCTCAATCATCTGGACACGTTTCTTATGTGGCGGCTACGGTTCCAATAACTATT 60
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 3 CAAATGGCTCAATCATCTGGACACGTTTCTTATGTGGCGGTTACGGTTCCAATAGCTATT 62
Query 61 GCCATGACAGTGTTGTGCATGTTTCTAGCCAACGCAGTGACCTACGCCCGGAGACCGACC 120
| |||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||
Sbjct 63 GTCATGACAGTGTTGTGCTTGTTTCTAGCCAACGCCGTGACCTATGCCCGGAGACCGACC 122
Query 121 ACCTACTTTGTGGGAGGCGACGACGGTTGGGACCCGGTTGTTCCGATGGACACTTGGGCA 180
|||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 123 ACCTACATTGTGGGAGGCGACGATGGTTGGGATCCGGTTGTTCCGATGGACACTTGGGCA 182
Query 181 CGAGGCAAAACCTTTTATGCTGGTGATATCCTCGAATTCAAATACGATGATCAGAGATTT 240
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 183 CGAGGCAAAACCTTTTATGCTGGTGATATTCTCGAATTCAAATACGATTATCAGAGATTT 242
Query 241 AATTTGATTGTGGTAAACCGAACTGGTTATGAAACTTGTGAAGCGAACGTTGGAGCGATA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 AATTTGATTGTGGTAAACCGAACTGGTTATGAAACTTGTGAAGCGAACGTTGGAGCGATA 302
Query 301 GAGTATTCGTCCGGAGACGATAAGATCCAACTTCATTATGGTTATAATTATTTCATTGGA 360
|| |||||||||||||||||||||||||| ||| |||| ||||||||||||||||| |||
Sbjct 303 GAATATTCGTCCGGAGACGATAAGATCCAGCTTAATTACGGTTATAATTATTTCATCGGA 362
Query 361 ACATATACTCCCGAGGATTGTTCCACCGGTTTAAAGATGGCCATCAAAGCATTGGCTCCC 420
||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 363 ACATATACTCCCGAGGATTGTACCACCGGTTTAAAAATGGCCATCAAAGCATTGGCTCC- 421
Query 421 AA-ATAAATTAAATGAAGCAACTAACTATTATAATGATAAGTG 462
|| |||||||||||||||||||| | ||| | |||||||||||
Sbjct 422 AAGATAAATTAAATGAAGCAACTTATTATAACAATGATAAGTG 464
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24112390560
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5