BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471996
Length=1513
Score E
Sequences producing significant alignments: (Bits) Value
AT1G17830.1 | Symbols: | Protein of unknown function (DUF789) ... 1829 0.0
> AT1G17830.1 | Symbols: | Protein of unknown function (DUF789)
| chr1:6135803-6138432 REVERSE LENGTH=1589
Length=1589
Score = 1829 bits (990), Expect = 0.0
Identities = 1230/1338 (92%), Gaps = 48/1338 (4%)
Strand=Plus/Plus
Query 1 AAAAagagagaaagagccagaggagagagagagagaAGCTTTTGGTCGTGTTCGTTTTTC 60
|||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||
Sbjct 12 AAAAAGAGAGAAAGAGCC--A-GAG-GAGAGAGAGAAGCTTTTGGTCGTGTTCGTTTTTC 67
Query 61 -TTCTTTCTTTATTGCAATAATAAATAGAAGCAAATCATACTCCAAAAACCTTCATTC-- 117
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 68 TTTCTTTCTTTCTTGCAATAATAAATAGAAGCAAATCATACTCCAAAAACCTTCATTCAA 127
Query 118 A-------A--A----------C--AAAGATTTCATCTAAAATTCAGTAAACTCATCTAC 156
| | | | ||||||||||||| |||||||||||||||||||||
Sbjct 128 ACCTTGCTACCACTTTCTTCCCCTAAAAGATTTCATCT-AAATTCAGTAAACTCATCTAC 186
Query 157 GAGAGTTCTTGTTTTTCGTTAAATATAATTTTCTTAGAGAGAGCCTAATAAGCTGTTTAA 216
||||||||||||||| || || |||||||| |||||||||| ||||||||||||
Sbjct 187 --GAGTTCTTGTTTTTC-TT---TA-AATTTTCTAAGAGAGAGCC---TAAGCTGTTTAA 236
Query 217 TATAGTAATCTAATATTTagagagatggagagagagagaATGTGGTGGTGGTCATCATCC 276
|||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 237 TATAGTCATCTAATATTTAGAGAGATGGTGGGAGAGAGAATGTGGTGGTGGTCATCATCG 296
Query 277 TCCACGAAACTCCGATCAAACCTTGAGAGATTTCTTAGAGGAATCACTCCAAAGCCTCCT 336
|| ||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||
Sbjct 297 TCGACGAAACTCCGATCAAACCTTGAAAGATTTCTCAGAGGAATCACTCCAAAACCTCCT 356
Query 337 TCTTTCTCTTTATCACAGAGCTGCAAGAACGATTTGAACAGTTTGTGGATCCATGAGGAC 396
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 357 TCTTTCTCTTTATCACAGAGCTGCAAGAATGATTTGAACAGTTTGTGGATCCATGAGAAC 416
Query 397 AAAGATGAGATTGAATATTTCAGGCTTAGTGATCTTTGGGACTCTTTTGATGAGCCAAGC 456
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 417 AAAGATGAGATTGAATATTTCAGGCTTAGTGATCTTTGGGACTGTTTTGATGAGCCAAGC 476
Query 457 GCGTATGGACTCGGATCAAAGGTCGATTTAAACAATGGTGAATCCGTTATGCAGTACTAT 516
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 477 GCGTATGGACTTGGATCAAAGGTCGACTTAAACAATGGTGAATCCGTTATGCAGTACTAT 536
Query 517 GTCCCGTATCTATCCGCCATTCAAATCTATACTAACAAATCTACAGCTATTTCCAGGAAC 576
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 537 GTCCCGTATCTATCCGCCATTCAAATCTATACTAACAAATCTACAGCCATTTCTAGGATT 596
Query 577 CAGAGTGATGTGGTTGATTGTGAGAGTGAATGTTGGAGTGATGATAGTGAGATTGAGAAG 636
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 CATAGTGATGTGGTTGATTGTGAGAGTGAATGTTGGAGTGATGATAGTGAGATTGAGAAG 656
Query 637 TTTTCAAGGTCAATGAGCAGTGGTTCTAGCAAAATATGGGATTCTGTTTCTGATGATTCG 696
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 TTGTCTAGGTCAATGAGCAGTGGTTCTAGCAAAATATGGGATTCTGTTTCTGATGATTCG 716
Query 697 GGTTATGAGATCGATGGTGTTTCTTCTTTGATGCGAGATAAGCTCGGTTCCATTGATTTT 756
|||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||
Sbjct 717 GGTTATGAGATCGATGGTACTTCTTCATTGATGCGAGATAAGCTCGGTTCTATTGATTTT 776
Query 757 CAGTATTTTGAGTCCGCTAAACCGCACTTGCGGGTTCCTCTTACCGCTAAGGTAAATGAC 816
||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 777 CAGTACTTTGAGTCCGTTAAACCGCACTTGCGTGTTCCTCTTACCGCTAAGGTAAATGAA 836
Query 817 TTGGCTGAGAAGTATCCCGGACTTGCGACTCTAAGGAGTGTTGATTTGTCTCCAGCAAGT 876
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 837 TTGGCTGAGAAGTATCCGGGACTTTCGACTCTAAGGAGTGTTGATTTGTCTCCAGCAAGT 896
Query 877 TGGATGGCCATTGCTTGGTATCCAATTTACCACATTCCCTCTCGGAATATGGATAAAGAC 936
||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 897 TGGTTGGCCATTGCTTGGTATCCAATTTACCACATTCCCTCTCGGAAGACCGATAAAGAT 956
Query 937 TTATCGACGTGTTTCTTGAGTTATCATACGCTATCTTCGGCTTTTCAAGGTAACTTGATA 996
|||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 957 TTATCGACATGTTTCTTGAGTTATCATACTTTATCTTCGGCTTTCCAAGGTAACTTGATA 1016
Query 997 GAGGGAGGGGATGAAATTAACGAAACCATGGAAGAAGAAACATTGTGTTTTGATGATGAA 1056
||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||| | |
Sbjct 1017 GAGGGAGACGATGAGATTAACGAAACCATGAAAGAAGAAACATTGTGTTTTGATGAAGGA 1076
Query 1057 CAAGTGACCAAGAG-ACTTCCTTTGGCTCCTTTTGGTTTAGTTAGTTACAAGAT-GCAAG 1114
| ||||||||||| | | |||||||||||||||||||||||||||||||| || |||||
Sbjct 1077 CCGGTGACCAAGAGTA-TACCTTTGGCTCCTTTTGGTTTAGTTAGTTACAA-ATTGCAAG 1134
Query 1115 GAGATTTGTGGAGTAATCAAGAATCATG-TGACCAAGAACGTCTAGTTTATCTCCACAGT 1173
||||||||||||| |||||||||| || |||||||| |||| |||||||||| | ||||
Sbjct 1135 GAGATTTGTGGAGGAATCAAGAATG-TGGTGACCAAGGACGTATAGTTTATCTTCGCAGT 1193
Query 1174 GCAGCTGATTCGTGGCTGAAACAGCTTAATGTTCATGATCACCATGACTATAGCTTCTTC 1233
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 1194 GCAGCTGATTCGTGGCTGAAACAGCTTAATGTTCAAGATCACCATGACCATAGCTTCTTC 1253
Query 1234 TCCATGAACATGAGCTTGTAGATCCaaaaaaaGAG--CCATGACTCTGTTTTTT-GCTCT 1290
||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||
Sbjct 1254 TCCATGAACATGAGCTTGTAGATCCAAAAAAAGAGAGCCAAGACTCTGTTTTTTTGCTCT 1313
Query 1291 GTTTTTAGCTGTTTTCTT 1308
|||||||| |||||||||
Sbjct 1314 GTTTTTAGTTGTTTTCTT 1331
Score = 259 bits (140), Expect = 5e-68
Identities = 222/259 (86%), Gaps = 15/259 (6%)
Strand=Plus/Plus
Query 1267 AGCCATGACTCTG-TTTTTTGCTCTGTTTTTAGCTG-TTT-----TCTT-GGTATATAGC 1318
||||| ||||||| ||||||||||||||||||| || ||| |||| ||||||||||
Sbjct 1332 AGCCAAGACTCTGTTTTTTTGCTCTGTTTTTAGTTGTTTTAAGAATCTTAGGTATATAGC 1391
Query 1319 TACTCGTCATTGTAGAGGTTTTGTTTCCTTCTG-TAGAACCCATGGAAAATAAAGAGAAT 1377
||||| | ||||||||||| ||||||||||| | |||||| |||||||||||||||||
Sbjct 1392 AACTCG-AAATGTAGAGGTTTCGTTTCCTTCTGCTTGAACCCGTGGAAAATAAAGAGAAT 1450
Query 1378 TAGGCTTGTTTTTGGCTTTTT-AGTTATGA-GATAATCTTTGTTTTATGAGAGATTATGG 1435
||||||||||||||||||| | || | || | | | |||||||| |||||||||||||
Sbjct 1451 TAGGCTTGTTTTTGGCTTTATGAGA-AGGAAGTTTTT-TTTGTTTTGTGAGAGATTATGG 1508
Query 1436 AAACGAAACTTGTGAGTTTTGTCTCATGtttttttttCTAG-ATGTGTTTTAAGTTTGTA 1494
||| ||||| | ||||| |||||||| |||||||||||||| |||||||||| |||||||
Sbjct 1509 AAATGAAACCTATGAGTATTGTCTCAAGTTTTTTTTTCTAGGATGTGTTTTATGTTTGTA 1568
Query 1495 TGGATTTCTGACCAGATAA 1513
||||| |||||||||||||
Sbjct 1569 TGGATATCTGACCAGATAA 1587
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74648210415
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5