BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471997
Length=2838
Score E
Sequences producing significant alignments: (Bits) Value
AT1G17840.1 | Symbols: WBC11, ABCG11, DSO, COF1, ATWBC11 | whit... 4503 0.0
AT1G17850.2 | Symbols: | Rhodanese/Cell cycle control phosphat... 573 3e-162
> AT1G17840.1 | Symbols: WBC11, ABCG11, DSO, COF1, ATWBC11 | white-brown
complex homolog protein 11 | chr1:6142564-6146521
FORWARD LENGTH=3045
Length=3045
Score = 4503 bits (2438), Expect = 0.0
Identities = 2747/2888 (95%), Gaps = 54/2888 (2%)
Strand=Plus/Plus
Query 1 AAAAGAGAAACAACCAAAAAGAAACAAGGAGAAGTGTTTGTTCTGTTTCAGTCATCCAAG 60
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||
Sbjct 8 AAAAGAGAAACAACCAAAAAGAAAGAAGAAGAAGTGTTTGTTCTGTTTCAGTCATTCAAG 67
Query 61 TTCATGAGAATAAAAACGAGTCCAAGTTTGTTGTTCATGCAAAATTCTCATGACTCTCTT 120
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 68 TTCATGAGAATAGAAACGAGTCCAAGTTTGTTGTTCATGCAAAATTCTCATGACTCTGTT 127
Query 121 ACACTCCTGAATTTCTTCTACTTAAATTTCACTCAATAAC-TTTATTTTTCTATCAGTTC 179
|||||||||||||||||||||||| ||| || |||||||| ||| || ||||||||||||
Sbjct 128 ACACTCCTGAATTTCTTCTACTTATATTCCATTCAATAACTTTTCTTCTTCTATCAGTTC 187
Query 180 AACGTT--CACACTTTTTCCATTTCCTCGACAAACTCCttttttt-tctca--------g 228
|||||| ||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 188 AACGTTCACACACTTTTTCCATTTCCTCGACAAACTCCTTTTTTTCTCTCACTTTTCTCG 247
Query 229 -attc--------ttttttt-t-t-----AAACAAAAATCCTCTGTTTCGGTTTAAGAGA 272
|||| ||||||| | | ||||| ||||||||||||| |||||||||||
Sbjct 248 AATTCTTTTTTTTTTTTTTTCTCTCAACGAAACATAAATCCTCTGTTTTGGTTTAAGAGA 307
Query 273 TGGAGATAGAAGCAAGCAGACAGCAAACCACCGTACCGGTTTCAGTCGGCGGAGGGAATT 332
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 308 TGGAGATAGAAGCAAGCAGACAACAAACCACCGTACCGGTTTCAGTCGGCGGTGGGAATT 367
Query 333 TTCCGGTTGGTGGGTTAAGTCCGTTGAGTGAAGCTATATGGAGAGAGAAAGCTCCAACGG 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 368 TTCCGGTTGGTGGGTTAAGTCCGTTGAGTGAAGCTATATGGAGAGAGAAAGCTCCAACGG 427
Query 393 AGTTCGTCGGAGACGTGTCAGCGAGGCTCACGTGGCAAGATCTGACGGTGATGGTGACTA 452
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 428 AGTTTGTCGGAGACGTGTCAGCGAGGCTTACGTGGCAAGATCTGACGGTGATGGTGACTA 487
Query 453 TGGGAGATGGTGAGACTCAAAATGTTCTTGAAGGTCTTACCGGTTACGCTGAACCGGGAT 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 488 TGGGAGATGGTGAGACTCAAAATGTTCTTGAAGGTCTTACCGGTTACGCTGAACCGGGAT 547
Query 513 CTCTCACGGCTCTCATGGGTCCTTCCGGCTCTGGAAAATCAACTATGCTCGACGC-TCTA 571
||||||||||||||||||| ||||||||||| || ||||| |||||||||||||| | ||
Sbjct 548 CTCTCACGGCTCTCATGGGCCCTTCCGGCTCCGGGAAATCTACTATGCTCGACGCAT-TA 606
Query 572 GCTAGCCGCCTCGCCGCTAACGCTTTTCTCTCCGGCACCGTTCTTCTTAACGGCCGCAAA 631
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 607 GCTAGCCGCCTCGCTGCTAACGCTTTTCTCTCCGGCACCGTTCTTCTTAACGGCCGCAAA 666
Query 632 ACCAAACTCTCCTTTGGAACAGCTGCGTATGTGACACAAGACGATAACTTGATTGGGACG 691
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||
Sbjct 667 ACCAAACTCTCCTTTGGAACAGCTGCATATGTGACCCAAGACGATAACTTGATTGGTACG 726
Query 692 TTAACTGTGAGAGAGACGATTTGGTATTCAGCGAGAGTTCGTCTTCCGGACAAGATGTTA 751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 727 TTAACTGTGAGAGAGACGATTTGGTATTCAGCGAGAGTTCGTCTTCCGGACAAGATGTTA 786
Query 752 CGGTCGGAGAAGCGTGCTCTTGTGGAGAGGACAATAATAGAGATGGGTCTTCAGGATTGT 811
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 787 CGGTCGGAGAAGCGTGCTCTAGTGGAAAGGACAATAATAGAGATGGGTCTTCAGGATTGT 846
Query 812 GCAGATACTGTTATAGGAAATTGGCATTTGCGTGGAATTAGTGGTGGAGAGAAGAGAAGA 871
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 847 GCAGATACTGTCATAGGAAATTGGCATTTGCGTGGAATTAGTGGTGGAGAGAAGAGAAGA 906
Query 872 GTCAGTATTGCTCTTGAGATTCTAATGAGACCTCGTTTACTGTTTCTCGATGAGCCAACA 931
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 907 GTCAGTATTGCTCTTGAGATTTTAATGAGACCTCGTTTGCTGTTTCTCGATGAGCCAACA 966
Query 932 AGTGGTCTCGATAGTGCTTCTGCTTTCTTTGTGACTCAGACATTGCGTGCGCTATCACGA 991
|||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 967 AGTGGTCTTGATAGTGCTTCTGCTTTCTTTGTGACTCAGACTTTGCGTGCTTTATCACGA 1026
Query 992 GATGGAAGGACGGTGATTGCATCGATCCATCAACCGAGCAGTGAGGTTTTCGAGTTGTTT 1051
||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1027 GATGGAAGGACGGTGATAGCATCGATCCACCAACCGAGCAGTGAGGTTTTTGAGTTGTTT 1086
Query 1052 GATCGGTTGTATCTGCTTTCTGGAGGCAAAACTGTTTACTTTGGTCAAGCTTCAGATGCA 1111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1087 GATCGGTTGTATCTGCTTTCTGGAGGCAAAACTGTTTACTTTGGTCAAGCTTCAGATGCA 1146
Query 1112 TATGAGTTCTTTGCACAAGCTGGGTTTCCATGTCCTGCGTTAAGGAACCCTTCTGATCAT 1171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1147 TATGAGTTCTTTGCACAAGCTGGGTTTCCATGTCCTGCGTTAAGGAACCCTTCTGATCAT 1206
Query 1172 TTCCTGAGATGCATAAACTCAGACTTTGACAAAGTTAGAGCCACTTTGAAAGGTTCTATG 1231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1207 TTCCTGAGATGCATAAACTCAGACTTTGACAAAGTTAGAGCCACTTTGAAAGGTTCTATG 1266
Query 1232 AAGCTAAGGTTTGAAGCAAGCGATGATCCGTTGGAAAAGATTACCACAGCCGAAGCTATT 1291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1267 AAGCTAAGGTTTGAAGCAAGCGATGATCCGTTGGAAAAGATTACCACAGCCGAAGCTATT 1326
Query 1292 AGAGTCTTGGTTGACTATTACCACACTTCTGATTACTACTACACAGCAAAGGCTAAGGTT 1351
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1327 AGACTATTGGTTGACTATTACCACACTTCTGATTACTACTACACAGCAAAGGCTAAGGTT 1386
Query 1352 GAGGAGATATCCCAATTTAAAGGGACTATTCTTGACTCTGGAGGCAGCCAGGCTAGTTTC 1411
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1387 GAGGAGATATCCCAATTTAAAGGGACTATTCTTGACTCCGGAGGCAGCCAGGCTAGTTTC 1446
Query 1412 CTTCTGCAGACCTACACTTTAACAAAGCGATCCTTCATCAACATGTCAAGGGACTTTGGA 1471
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1447 CTTCTGCAGACCTACACTTTAACAAAGCGATCATTCATCAACATGTCAAGGGACTTTGGT 1506
Query 1472 TATTACTGGCTCAGACTGT-TAATTTACATCTTGGTCACAGTCTGCATCGGAACCATCTA 1530
||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||
Sbjct 1507 TATTACTGGCTCAGACT-TCTAATTTACATCTTGGTCACAGTCTGCATTGGAACCATCTA 1565
Query 1531 TCTGAACGTTGGGACTAGCTACAGCGCCATTCTGGCACGGGGCTCATGTGCGTCTTTCGT 1590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1566 TCTGAACGTTGGGACTAGCTACAGCGCCATTCTGGCACGGGGCTCATGTGCGTCTTTCGT 1625
Query 1591 CTTTGGCTTTGTAACATTCATGTCAATTGGTGGATTTCCTTCGTTTGTTGAAGACATGAA 1650
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1626 CTTTGGCTTTGTAACATTCATGTCAATTGGTGGATTTCCTTCGTTCGTTGAAGACATGAA 1685
Query 1651 GGTCTTCCAAAGAGAGAGACTAAATGGGCACTATGGAGTAGCTGCGTTTGTGATAGCCAA 1710
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1686 GGTCTTCCAAAGAGAGAGACTAAACGGGCACTATGGAGTAGCTGCGTTTGTGATAGCCAA 1745
Query 1711 CACATTATCTGCAACGCCATTCCTTATCATGATAACTTTTATCTCCGGGACAATCTGTTA 1770
||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1746 CACATTATCTGCAACACCATTCCTGATCATGATAACTTTCATCTCCGGGACAATCTGTTA 1805
Query 1771 CTTCATGGTGGGTCTGCATCCAGGATTCACTCACTACCTCTTCTTTGTTCTCTGCCTCTA 1830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1806 CTTCATGGTGGGTCTGCATCCAGGATTCACTCACTACCTCTTCTTTGTTCTCTGCCTCTA 1865
Query 1831 TGCAAGTGTCACCGTAGTAGAGAGCTTAATGATGGCGATAGCTAGCATTGTTCCCAACTT 1890
||||||||||||||| || ||||||||||||||||| || ||||| ||||||||||||||
Sbjct 1866 TGCAAGTGTCACCGTTGTGGAGAGCTTAATGATGGCAATTGCTAGTATTGTTCCCAACTT 1925
Query 1891 CCTAATGGGTATCATCATCGGAGCTGGAATCCAGGGGATCTTCATGCTGGTTTCTGGATT 1950
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1926 CCTCATGGGTATCATCATCGGAGCTGGAATCCAGGGGATCTTCATGCTGGTTTCTGGATT 1985
Query 1951 CTTCAGGCTTCCAAATGACATCCCAAAACCTTTCTGGCGTTATCCAATGTCATACATCAG 2010
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1986 CTTCAGGCTTCCAAATGACATCCCAAAACCTTTCTGGCGTTACCCAATGTCCTACATCAG 2045
Query 2011 CTTCCACTTCTGGGCTCTACAAGGTCAGTACCAGAATGATCTGAGAGGCTTGATGTTTGA 2070
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2046 CTTCCACTTCTGGGCTCTACAAGGTCAGTACCAGAATGATCTGAGAGGCTTGACGTTTGA 2105
Query 2071 CAGTCAGGGGAGTGCTTTCAAGATTCCGGGTGAATATGTTCTGGAGAACGTCTTCCAGAT 2130
||| || ||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 2106 CAGCCAAGGGAGTGCTTTCAAGATTCCGGGTGAATATGTTCTTGAGAACGTCTTTCAGAT 2165
Query 2131 CGACCTGCACCGATCAAAATGGATTAACCTCAGTGTGATTCTTAGCATGATTATCATCTA 2190
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2166 CGACTTGCATCGATCAAAATGGATTAACCTCAGTGTGATTCTTAGCATGATTATCATCTA 2225
Query 2191 CCGCATCATCTTCTTCATCATGATTAAGACCAACGAGGATGTTACTCCTTGGGTCAGAGG 2250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2226 CCGCATCATCTTCTTCATCATGATTAAGACCAACGAGGATGTTACTCCTTGGGTCAGAGG 2285
Query 2251 TTACATAGCACGCAGAAGGATGAAGCAGAAGAATGGAACCCAGAACACCACAGTTGCACC 2310
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2286 TTACATAGCACGCAGAAGGATGAAGCAGAAGAATGGAACTCAGAACACCACAGTTGCACC 2345
Query 2311 AGACGGTCTTACCCAGTCTCCTTCTCTGAGAAATTACATTGCTACACGAACAGACGGAGC 2370
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2346 AGATGGTCTTACCCAGTCTCCTTCTCTGAGAAATTACATTGCTACACGAACAGATGGAGC 2405
Query 2371 TCGCAGATGGTAGAGTTTGAGCCTGTCCAGTGTTTGAAGACACTTCAAGAAAGTTGATCA 2430
||||||||||||||| |||| ||||||||||||||||||| |||||| |||| |||||||
Sbjct 2406 TCGCAGATGGTAGAGCTTGATCCTGTCCAGTGTTTGAAGATACTTCATGAAAATTGATCA 2465
Query 2431 AAGCAAAGCCACCATATTTCACTAGGCCTGCAATATCAAATCTCCATGTAATGTGACAGC 2490
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2466 AAGCAAAGCCACCATATTTCACTAGGCCTGCAATATCAAAACTCCATGTAATGTGACAGC 2525
Query 2491 TGAGAAACTTCAAGTGTGTTAGTTATAGAAATATTAAAACCACGGATTTGTCTAAAATAA 2550
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2526 AGAGAAACTTCGAGTGTGTTAGTTATAGAAATATTAAAACCACGGATTTGTCTAAAATAA 2585
Query 2551 TCACTACTACATTTATTCTTCTACTTTGGTAGTAACAAGCACTATCTTGTTGCATTACAG 2610
||||||||||||||||| ||||||||||||| ||||||| || |||||||||||||||||
Sbjct 2586 TCACTACTACATTTATTTTTCTACTTTGGTATTAACAAGTACCATCTTGTTGCATTACAG 2645
Query 2611 TTTGCATTGTGCCGCAATTACAGCAGATAGATTAAGTTGTGAATTGTTACAAGCTTTGTT 2670
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2646 TTTGCATTGTGCCGAAATTACAGCAGATAGATTAAGTTGTGAATTGTTACAAGCTTTGTT 2705
Query 2671 TGTACATGTTGAAATGAAAAATTGAGTTCTGAGTTCTGACAAGTGTCACACCCGAAGAAC 2730
|||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||
Sbjct 2706 TGTACATGTTGAAATGAAAA-TTGAGTTCTGAGTTCTGACAAGTGTTACACCTGAAGAAC 2764
Query 2731 CTCTAAGAATGACTA---GT---------A---G--TTGT--TCAA-CTTCATTAGCTTC 2770
||| ||||||||||| || | | |||| | || |||||||||||||
Sbjct 2765 CTCAAAGAATGACTACTAGTTCTTCCTGGAACAGGCTTGTAATTAAACTTCATTAGCTTC 2824
Query 2771 TTCTTCAGCACTCTTCTGCTTTTTCTGTGTGCTGTTTCTCATCTGATCACTTGCCCATGA 2830
| ||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 2825 TGCTTCAGCACTCATCTGCTTTTGCTGTGTGCTGTT-CTCATCTGATCACTTGCCCATGG 2883
Query 2831 TAGGCCAA 2838
||| ||||
Sbjct 2884 TAGACCAA 2891
> AT1G17850.2 | Symbols: | Rhodanese/Cell cycle control phosphatase
superfamily protein | chr1:6145926-6148940 REVERSE LENGTH=2011
Length=2011
Score = 573 bits (310), Expect = 3e-162
Identities = 403/444 (91%), Gaps = 22/444 (5%)
Strand=Plus/Minus
Query 2415 TCAAGAAAGTTGATCAAAGCAAAGCCACCATATTTCACTAGGCCTGCAATATCAAATCTC 2474
||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2011 TCATGAAAATTGATCAAAGCAAAGCCACCATATTTCACTAGGCCTGCAATATCAAAACTC 1952
Query 2475 CATGTAATGTGACAGCTGAGAAACTTCAAGTGTGTTAGTTATAGAAATATTAAAACCACG 2534
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1951 CATGTAATGTGACAGCAGAGAAACTTCGAGTGTGTTAGTTATAGAAATATTAAAACCACG 1892
Query 2535 GATTTGTCTAAAATAATCACTACTACATTTATTCTTCTACTTTGGTAGTAACAAGCACTA 2594
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| || |
Sbjct 1891 GATTTGTCTAAAATAATCACTACTACATTTATTTTTCTACTTTGGTATTAACAAGTACCA 1832
Query 2595 TCTTGTTGCATTACAGTTTGCATTGTGCCGCAATTACAGCAGATAGATTAAGTTGTGAAT 2654
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1831 TCTTGTTGCATTACAGTTTGCATTGTGCCGAAATTACAGCAGATAGATTAAGTTGTGAAT 1772
Query 2655 TGTTACAAGCTTTGTTTGTACATGTTGAAATGAAAAATTGAGTTCTGAGTTCTGACAAGT 2714
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1771 TGTTACAAGCTTTGTTTGTACATGTTGAAATGAAAA-TTGAGTTCTGAGTTCTGACAAGT 1713
Query 2715 GTCACACCCGAAGAACCTCTAAGAATGACTA---GT---------A---G--TTGT--TC 2755
|| ||||| |||||||||| ||||||||||| || | | |||| |
Sbjct 1712 GTTACACCTGAAGAACCTCAAAGAATGACTACTAGTTCTTCCTGGAACAGGCTTGTAATT 1653
Query 2756 AA-CTTCATTAGCTTCTTCTTCAGCACTCTTCTGCTTTTTCTGTGTGCTGTTTCTCATCT 2814
|| |||||||||||||| ||||||||||| ||||||||| |||||||||||| |||||||
Sbjct 1652 AAACTTCATTAGCTTCTGCTTCAGCACTCATCTGCTTTTGCTGTGTGCTGTT-CTCATCT 1594
Query 2815 GATCACTTGCCCATGATAGGCCAA 2838
||||||||||||||| ||| ||||
Sbjct 1593 GATCACTTGCCCATGGTAGACCAA 1570
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 141019276773
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5