BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472002
Length=1312
Score E
Sequences producing significant alignments: (Bits) Value
AT1G17890.1 | Symbols: GER2 | NAD(P)-binding Rossmann-fold supe... 1903 0.0
AT1G73250.1 | Symbols: ATFX, GER1 | GDP-4-keto-6-deoxymannose-3... 854 0.0
> AT1G17890.1 | Symbols: GER2 | NAD(P)-binding Rossmann-fold superfamily
protein | chr1:6154268-6155752 REVERSE LENGTH=1353
Length=1353
Score = 1903 bits (1030), Expect = 0.0
Identities = 1243/1341 (93%), Gaps = 34/1341 (3%)
Strand=Plus/Plus
Query 1 GCGGATATTCAGATCTCCTCCACCTTACATTCTCCGAGGAATTTAACCTTTACCTACAAA 60
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1 GCGGATATTCAGATCTCCTCCACATTACATTCTCCAAGGAATTTAACCTTTACCTACAAA 60
Query 61 TCTAAGCTTCTGTTCGTTGACTTCGAAAACTGGTAGCTATAAGTCAAAGTCCCCTTTCTC 120
|||||||||||| ||||||||||||||||||| || |||||||||||| ||||| |||||
Sbjct 61 TCTAAGCTTCTG-TCGTTGACTTCGAAAACTGATATCTATAAGTCAAAATCCCCATTCTC 119
Query 121 AATCTCTCATCGTCTTGTAGAACTAATTGACTCGACAATGGCGGACACCACAGGATCCGA 180
|||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 120 AATCGCTCATCGTCTTGTAGAACTAATTGACTAAACAATGGCGGACAACACAGGATCCGA 179
Query 181 GATGAAATCAGGTTCGTTTATGTTAGAGAAATCCGCCAAGATCTTTGTCGCTGGACATAG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GATGAAATCAGGTTCGTTTATGTTAGAGAAATCCGCCAAGATCTTTGTCGCTGGACATAG 239
Query 241 GGGATTGGTTGGATCTGCCATTGTTCGCAAGCTCCAGGATCAGGGTTTCACCAATCTGGT 300
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 240 GGGATTGGTTGGATCTGCCATTGTCCGCAAGCTCCAGGATCAGGGTTTCACCAATTTGGT 299
Query 301 CCTTCGAACCCATTCCGAGCTTGATCTCACTAGCCAATCCGATGTTGAATCCTTCTTTGC 360
||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 300 CCTTCGAACCCATTCAGAGCTTGATCTCACTAGCCAATCAGATGTTGAATCTTTCTTTGC 359
Query 361 TACAGAGAAACCAGTTTATGTCATCCTCGCTGCAGCTAAAGTCGGTGGGATTCATGCTAA 420
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 360 TACAGAGAAACCAGTTTATGTCATCCTAGCTGCTGCTAAAGTCGGTGGGATTCATGCTAA 419
Query 421 CAACACATACCCAGCTGATTTCATTGGTGTCAATCTCCAAATCCAGACCAATGTGATCCA 480
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 420 CAACACATACCCAGCTGATTTCATTGGGGTCAATCTCCAAATCCAGACCAATGTGATCCA 479
Query 481 CTCTGCTTATA-AGCATGGTGTGAAGAAACTCCTCTTTCTTGGTTCATCTTGCATTTACC 539
||||||||||| | || |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 480 CTCTGCTTATACA-CACGGTGTGAAGAAACTCCTCTTCCTTGGTTCATCTTGCATTTACC 538
Query 540 CCAAATTCGCTCCTCAACCGATTCCTGAATCTGCGCTTCTTACTGGTCCGCTTGAACCGA 599
||||||| |||||||| |||||||| ||||||||||||||||| |||||||| |||||||
Sbjct 539 CCAAATTTGCTCCTCAGCCGATTCCCGAATCTGCGCTTCTTACCGGTCCGCTCGAACCGA 598
Query 600 CTAACGAATGGTACGCAATTGCCAAGATCGCAGGG-ATTAAGATGTGTCAAGCTTACCGG 658
| ||||||||||| || || ||||||||||| ||| ||||||||||||||||||||||||
Sbjct 599 CAAACGAATGGTATGCGATCGCCAAGATCGC-GGGTATTAAGATGTGTCAAGCTTACCGG 657
Query 659 CTTCAGCATCAATGGGATGCCATCTCCGGTATGCCCACGAATCTGTACGGTCAAAATGAT 718
||||||||||| |||||||| |||||||||||||||||||||||||| ||||| ||||||
Sbjct 658 CTTCAGCATCAGTGGGATGCTATCTCCGGTATGCCCACGAATCTGTATGGTCAGAATGAT 717
Query 719 AATTTCCACCCGGAGAATTCTCATGTGCTGCCTGCTCTCATGAGGAGGTTCCATGAAGCT 778
|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 718 AATTTCCACCCGGAGAATTCCCATGTGCTGCCTGCTCTCATGAGGAGGTTTCATGAAGCC 777
Query 779 AAAGCCAACAATGCTGAAGAAGTTGTGGTTTGGGGAAGCGGAAGCCCGTTGCGGGAGTTT 838
|||||||| |||||||| |||||||||||||||||||| |||||||||||| ||||||||
Sbjct 778 AAAGCCAATAATGCTGACGAAGTTGTGGTTTGGGGAAGTGGAAGCCCGTTGAGGGAGTTT 837
Query 839 TTACATGTCGATGATTTGGCTGATGCTTGTGTTTTCTTGATGGATCAGTACAGCGGATTT 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 TTACATGTCGATGATTTGGCTGATGCTTGTGTTTTCTTGATGGATCAGTACAGCGGATTT 897
Query 899 GAGCATGTGAATGTAGGAAGTGGTGTCGAAGTGACGATCAAAGAATTGGCTGAGTTGGTG 958
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 898 GAGCATGTGAATGTAGGAAGTGGTGTTGAAGTGACGATCAAAGAATTGGCTGAGTTGGTG 957
Query 959 AAAGAAGTTGTTGGGTTTAAAGGAAAGCTAGTTTGGGACTGC-ACAAAACCAGACGGGAC 1017
||||||||||||||||||||||||||||| |||||||| | | |||||||||||||||||
Sbjct 958 AAAGAAGTTGTTGGGTTTAAAGGAAAGCTTGTTTGGGA-TACCACAAAACCAGACGGGAC 1016
Query 1018 ACCACGGAAACTGATGGATAACTCGAAGCTTGCGTCTTTGGGATGGACACCGAAGATTTC 1077
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1017 ACCAAGGAAACTGATGGATAGCTCGAAGCTTGCGTCTTTGGGATGGACACCGAAGATTTC 1076
Query 1078 ACTAAAAGATGGTCTCTCCCAAACTTATGAATGGTATTTGGAGAATGTTGTGCAGCAGCA 1137
|| |||||||| ||||||||||||||||||||||||||||| |||||||||||| || |
Sbjct 1077 GCTTAAAGATGGCCTCTCCCAAACTTATGAATGGTATTTGGAAAATGTTGTGCAGAAGAA 1136
Query 1138 GCAGTaaaaaaaaT----TC-A-------------T-T-C-T-CT-TC-ACACGTGAATG 1173
||||||||||||| || | | | | | || | |||||||||||
Sbjct 1137 GCAGTAAAAAAAACAAGGTCCAAAACACAAAGCAATATTCATTCTCTTTACACGTGAATG 1196
Query 1174 TTTGTGCGTTTGAAATTTGGTTTCAATACAGATCTCT--ATCTCTTTAATGTAATTTTTG 1231
||| ||||||||| ||||||| | |||||||||||| |||||||| ||||||||||||
Sbjct 1197 TTTATGCGTTTGATTTTTGGTT-CTATACAGATCTCTCTATCTCTTTTATGTAATTTTTG 1255
Query 1232 TATTCATGGATTTCATACCGTGCAAGTTAAGCAAACTTATTTTGTAATAAATGTAATATT 1291
|||||||||||||||||| || ||||||||||||||||| ||||||||||||||| |||
Sbjct 1256 TATTCATGGATTTCATACAGTTCAAGTTAAGCAAACTTACTTTGTAATAAATGTACCATT 1315
Query 1292 GTTGTTGAGATTATCAGTAAT 1312
|||||||||||||||| ||||
Sbjct 1316 GTTGTTGAGATTATCAATAAT 1336
> AT1G73250.1 | Symbols: ATFX, GER1 | GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase
1 | chr1:27545006-27546435 REVERSE
LENGTH=1254
Length=1254
Score = 854 bits (462), Expect = 0.0
Identities = 793/953 (83%), Gaps = 22/953 (2%)
Strand=Plus/Plus
Query 190 AGG-TTCGTTTATGT-TAGAGAAATCCGCCAAGATCTTTGTCGCTGGACATAGGGGATTG 247
||| ||||| |||| | || ||||| ||||| ||||| ||||| || ||| | || |||
Sbjct 98 AGGTTTCGTCCATGTCT-GACAAATCTGCCAAAATCTTCGTCGCGGGTCATCGTGGTTTG 156
Query 248 GTTGGATCTGCCATTGTTCGCAAGCTCCAGGATCAGGGTTTCACCAATCTGGTCCTTCGA 307
||||||||||||||||| |||||||| ||||| || |||||||||||||| || ||| |
Sbjct 157 GTTGGATCTGCCATTGTCCGCAAGCTTCAGGAACAAGGTTTCACCAATCTCGTTCTTAAA 216
Query 308 ACCCATTCCGAGCTTGATCTCACTAGCCAATCCGATGTTGAATCCTTCTTTGCTAC-AGA 366
|| || ||||||||||||||||| | ||| |||||||||||||||||||| || | |||
Sbjct 217 ACACACGCCGAGCTTGATCTCACTCGTCAAGCCGATGTTGAATCCTTCTTTTCT-CAAGA 275
Query 367 GAAACCAGTTTATGTCATCCTCGCTGCAGCTAAAGTCGGTGGGATTCATGCTAACAACAC 426
||| ||||||||||| ||||| || ||||||||||| ||||| ||||| |||||||||||
Sbjct 276 GAAGCCAGTTTATGTAATCCTAGCAGCAGCTAAAGTTGGTGGTATTCACGCTAACAACAC 335
Query 427 ATACCCAGCTGATTTCATTGGTGTCAATCTCCAAATCCAGACCAATGTGATCCACTCTGC 486
|| || |||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 336 CTATCCTGCTGATTTCATTGGTGTCAATCTCCAGATTCAGACCAATGTGATCCACTCTGC 395
Query 487 TTATAAGCATGGTGTGAAGAAACTCCTCTTTCTTGGTTCATCTTGCATTTACCCCAAATT 546
||| |||| ||||||||||| || ||||| ||||| ||||| ||||||||||| |||||
Sbjct 396 ATATGAGCACGGTGTGAAGAAGCTTCTCTTCCTTGGATCATCCTGCATTTACCCTAAATT 455
Query 547 CGCTCCTCAACCGATTCCTGAATCTGCGCTTCTT-ACTG-GTCCGCTTGAACCGACTAAC 604
|||||||| || |||||||| ||||| || || || | | |||||||||| |||||
Sbjct 456 TGCTCCTCAGCCAATTCCTGAGTCTGC-TTTGTTAACAGCAT-CGCTTGAACCAACTAAT 513
Query 605 GAATGGTACGCAATTGCCAAGATCGCAGGGATTAAGA-TGTGTCAAGCTTACCGGCTTCA 663
|| ||||| || ||||| |||||||| |||||||||| | ||||| ||||| || ||||
Sbjct 514 GAGTGGTATGCTATTGCTAAGATCGCTGGGATTAAGACT-TGTCAGGCTTATAGGATTCA 572
Query 664 GCATC-AATGGGATGCCATCTCCGGTATGCCCACGAATCTGTACGGTCAAAATGATAATT 722
||| | ||||||||| ||||| || ||||| || ||||| || |||| ||||| ||||
Sbjct 573 GCA-CGGATGGGATGCAATCTCTGGCATGCCTACTAATCTCTATGGTCCTAATGACAATT 631
Query 723 TCCACCCGGAGAATTCTCATGTGCTGCCTGCTCTCATGAGGAGGTTCCATGAAGCTAAAG 782
||||||||||||||||||||||||| |||||||| |||||||||||||| || || ||||
Sbjct 632 TCCACCCGGAGAATTCTCATGTGCTTCCTGCTCTTATGAGGAGGTTCCACGAGGCGAAAG 691
Query 783 CCAA-CAATGCTGAAGAAGTTGTGGTTTGGGGAAGC-GGAAGCCCGTTGCGGGAGTTTTT 840
|| | || || ||||||||||| ||||| | | || || |||||| ||||||| ||
Sbjct 692 TGAATGGA-GCGGAGGAAGTTGTGGTGTGGGGTA-CAGGTAGTCCGTTGAGGGAGTTCTT 749
Query 841 ACATGTCGATGATTTGGCTGATGCTTGTGTTTTCTTGATGGATC-AGTACAGCGGATTTG 899
||||| |||||||||||||||||||||||||||||| |||||| | |||||||| || |
Sbjct 750 GCATGTTGATGATTTGGCTGATGCTTGTGTTTTCTTGCTGGATCGA-TACAGCGGGTTGG 808
Query 900 AGCATGTGAATGTAGGAAGTGGTGTCGAAGTGACGATCAAAGAATTGGCTGAGTTGGTGA 959
||||||| || | ||||||||| |||||||| || | ||| ||||||||||||||||
Sbjct 809 AGCATGTTAACATTGGAAGTGGTCAAGAAGTGACTATTAGAGAGTTGGCTGAGTTGGTGA 868
Query 960 AAGAAGTTGTTGGGTTTAAAGGAAAGCTAGTTTGGGACTGCACAAAACCAGACGGGACAC 1019
|||| |||||||| ||| |||| ||||| | ||||| ||||| || ||||| || ||||
Sbjct 869 AAGAGGTTGTTGGTTTTGAAGGGAAGCTTGGATGGGATTGCACTAAGCCAGATGGCACAC 928
Query 1020 C-ACGGAAACTGATGGATAACTCGAAGCTTGCGTCTTTGGGATGGACACCGAAGATTTCA 1078
| | ||||||| ||||| | ||| ||||| ||||||||||| |||||||| ||| ||||
Sbjct 929 CGA-GGAAACTTATGGACAGCTCAAAGCTCGCGTCTTTGGGTTGGACACCTAAGGTTTCT 987
Query 1079 CTAAAAGATGGTCTCTCCCAAACTTATGAATGGTATTTGGAGAATGTTGTGCA 1131
|| | ||||||||| |||||||||||| ||||||||| |||||||| ||||
Sbjct 988 CTTAGAGATGGTCTGAGCCAAACTTATGATTGGTATTTGAAGAATGTT-TGCA 1039
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64557900870
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5