BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg472010 Length=1529 Score E Sequences producing significant alignments: (Bits) Value AT1G17960.1 | Symbols: | Threonyl-tRNA synthetase | chr1:61808... 2161 0.0 AT5G26830.1 | Symbols: | Threonyl-tRNA synthetase | chr5:94372... 667 0.0 AT1G18130.1 | Symbols: | Class II aaRS and biotin synthetases ... 292 5e-78 > AT1G17960.1 | Symbols: | Threonyl-tRNA synthetase | chr1:6180896-6183806 REVERSE LENGTH=1565 Length=1565 Score = 2161 bits (1170), Expect = 0.0 Identities = 1418/1535 (92%), Gaps = 27/1535 (2%) Strand=Plus/Plus Query 6 CTTCGTTCTCTGCTCCTCCATCGATGGCGAATAATCATCATCCCAAGGATGAGGCTTATC 65 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 47 CTTCGTTCTCTGCTCATCCATCGATGGCGAATAATCATCATCCCAAGGATGAGGCTTATC 106 Query 66 TCTCATCCGTCATCCCCAAGCGTATCAGGATCTTCGAGGAAATCCAAGCCGAACAACTTG 125 ||||||||||||||||||||||||||||| |||||||||||||||||||||| || |||| Sbjct 107 TCTCATCCGTCATCCCCAAGCGTATCAGGCTCTTCGAGGAAATCCAAGCCGAGCAGCTTG 166 Query 126 AGCAGCTTCAATCTCGGCCACACGATCCGATCAAGATCACTCTTCTCCCAGACGGTATCG 185 |||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||| Sbjct 167 AGCAGCTTCAATCTCGGCCACACGATCCAATCAAGATTACTCTTCTCCCCGACGGTATCG 226 Query 186 TGAAAGAGGGGAAG-AGATGGGAGACAACTCCAATGGATATCGCAGTGCAGATTTCTAAG 244 |||||| || ||| ||||||||||| |||||||||| ||||||||||||||||||||| Sbjct 227 AGAAAGAAGG-AAGGAGATGGGAGACCTCTCCAATGGACATCGCAGTGCAGATTTCTAAG 285 Query 245 GGTTTCGCCAAATCTGCTCTGGTTTCTTCGGTTGATCATGTCCTGTGGGACATGAATAGG 304 ||||| || |||||||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct 286 GGTTTAGCAAAATCTGCTCTGGTTTCTTCGGTTAATCATGTCTTGTGGGACATGAATAGG 345 Query 305 CCCCTGGAAGGTGATTGTTCGCT-AGAGATTTTCGGATTTGACAGCGACCAAGGCCGTGA 363 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||| | Sbjct 346 CCCCTGGAAGGTGATTGTTC-CTTAGAGATTTTCGGATTTGACAGCGACCAAGGCCGTAA 404 Query 364 TACTTTCTGGCATTCTAGTGCTCTCATTCTAGGTCACGCTCTCGAGCAGGAGTATGGATG 423 |||||||||||||||||| || | ||||||||| || ||||||||||||||||||||||| Sbjct 405 TACTTTCTGGCATTCTAGCGCCCACATTCTAGGCCAGGCTCTCGAGCAGGAGTATGGATG 464 Query 424 CAAGCTATGCATTGGACCCTGCAAAACCATAGATGAGGGCTTCTTTTGCGATGCATTTTA 483 ||||||||| |||||||||||| || ||| |||||| ||||||| || |||| || |||| Sbjct 465 CAAGCTATGTATTGGACCCTGCGAACCCAGAGATGAAGGCTTCTATTACGATTCACTTTA 524 Query 484 TCACGGCGAGCTGGGCTTAAACGACAATCATTTTCCAAACATCGAAGCAGAATTGCCCAT 543 | | ||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||| Sbjct 525 TTATGGCGAGCTGGGATTAAACGACAATCATTTTCCAAACATCGAAGCAAAATTACCCAT 584 Query 544 TAGAATGGCTGATTTTGGAGTGTTACATCGAAATGAGGAAAGTGGAGCACTTAGTGGAAT 603 ||||||||| || |||||||||||||| ||||||||||| |||||||||||| ||||||| Sbjct 585 TAGAATGGCCGAATTTGGAGTGTTACACCGAAATGAGGACAGTGGAGCACTTGGTGGAAT 644 Query 604 GACCCGTGTCCGACGGTTCGTACAGGATGATGCACACATATTCTGTAGAGTGGATCAGGT 663 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 645 GACCCGTGTCCGACGGTTTGTACAGGATGATGCACACATATTCTGTAGAGTGGATCAGGT 704 Query 664 TGGAG-AAGAAGTGAAGGGTGTGTTGGATTTCATTGACTGTGTTTACA-AAGTATTTGGG 721 || || ||||||||||||||||||||||||||||||||| |||||||| || |||||||| Sbjct 705 TG-AGGAAGAAGTGAAGGGTGTGTTGGATTTCATTGACTATGTTTACAGAA-TATTTGGG 762 Query 722 TTTACCTATGAGCTAAAGCTTTCAACGCCAGAGA-AGAAGTA-C-C-TTGGAGATTTGGA 777 ||||||||||| |||| |||||||||| || | | ||| | | | ||||||||||||| Sbjct 763 TTTACCTATGAACTAACGCTTTCAACG--AG-GCCA-AAGGATCACATTGGAGATTTGGA 818 Query 778 AACATGGGTTAAAGCTGAAAAGGATCTTGAAAAAGCGCTAGATAATTTTGGAAAGCCATG 837 |||||||| |||||||||||| |||||||||||||| |||||| |||||||||||||||| Sbjct 819 AACATGGGCTAAAGCTGAAAATGATCTTGAAAAAGCTCTAGATGATTTTGGAAAGCCATG 878 Query 838 GGTTATAAACAAAGGAGACGGTGCATTTTACGGCCCAAAGATAGACATAACAGTGTCGGA 897 ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| || Sbjct 879 GGTTATAAAGGAAGGAGACGGTGCATTTTATGGCCCAAAGATAGACATAACAGTGTCTGA 938 Query 898 TGCAATGAAAAGGAAATTCCAGTGTGCTACTTTACAGCTTGATTTTCAACTTCCGGCTTG 957 ||| | ||| ||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 939 TGCCAGGAATAGGAAATTCCAGTGTGCTACTATACAGCTTGATTTTCAACTTCCGGCTTG 998 Query 958 CTTCAAACTGAAATACATAACTaaaaaaaaCGAAAAGGAGAG-ACCTGTGATGATACATA 1016 |||||||||||||||| ||| | |||||||||||| |||| | ||||||||||||||||| Sbjct 999 CTTCAAACTGAAATACCTAAGTGAAAAAAACGAAATGGAG-GCACCTGTGATGATACATA 1057 Query 1017 GAGCGGTGTTGGGATCTGTTGAGCGTATGTTTGCCATATTGTTGGAGCATTACAAAGGAA 1076 | ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| Sbjct 1058 GTGCGGTGTTGGGATCTATTGAGCGTATGTTTGCCATATTGTTGGAACATTACAAAGGAA 1117 Query 1077 TCTGGCCTTTCTGGCTTAGTCCCCGCCAGGCCATAGTTTGCTCTCTTTCAGAGGATTATA 1136 | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1118 TTTGGCCCTTCTGGCTTAGTCCCCGCCAGGCCATAGTTTGCTCTCTTTCAGAGGATTGTA 1177 Query 1137 GTTCCTATGCAAAACAGGTACAAAAACAGATTCAA-GAAG-CTGGGTACTATGTTGATAT 1194 |||||||||| ||||||||||||||||||||| || |||| | ||||||||||||||||| Sbjct 1178 GTTCCTATGCCAAACAGGTACAAAAACAGATT-AATGAAGTC-GGGTACTATGTTGATAT 1235 Query 1195 TGATGAAAGTGACAGAAGCATCTGTAAAAAGGTGGCAGATGCTCGGGCTGCACCATACAA 1254 ||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||| Sbjct 1236 TGATGAAAGTGACAGAAGCCTCCGTAAAAAGGTGGCAGATGCTCGGGATGCACCATACAA 1295 Query 1255 CTACATACTGGTCGTAGGTCAAAAAGAGGCTACAACGGGACAGGTGACAGTTCGGCTCAG 1314 ||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||| Sbjct 1296 CTACATACTGGTCGTAGGTCAAAAAGAGGTTGCAACTGGACAGGTGACAGTTCGGCTCAG 1355 Query 1315 AGAGGACCCTGCAGGCCGTAAAGACTTGCCAGAGATGAGCATCGACAGTTTGCTGGATGA 1374 ||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct 1356 AGAGGACCCTGAAGGCCGTAAAGACTTGCCAGAGATGAGCATCGAAAGTTTGCTTGATGA 1415 Query 1375 ATTCAAGTTCAAGACAATCAACTTTCTCTGAGATCCGATCTGTTTATGGGTTAAAAATTC 1434 |||||||||||||||| ||||||| |||||||||||||| |||||||| |||||| ||| Sbjct 1416 ATTCAAGTTCAAGACAGTCAACTTCCTCTGAGATCCGAT--GTTTATGGTTTAAAATTTC 1473 Query 1435 ATTTTCCTGTTGATGATGAATGTATTTCTTTTATAATATAAGTCTTTTTCGTTGTACCAA 1494 ||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||| Sbjct 1474 ATTTTTCTGTTGATGATGAATGTATTTCTTTTATAATG---GTCTTTTTCATTGTACCAA 1530 Query 1495 GACATATTTTGGAATAAAAGGTACTGTTGAAATAT 1529 |||| |||||||||||||| ||||| ||||| ||| Sbjct 1531 GACACATTTTGGAATAAAATGTACTATTGAAGTAT 1565 > AT5G26830.1 | Symbols: | Threonyl-tRNA synthetase | chr5:9437297-9441779 FORWARD LENGTH=2395 Length=2395 Score = 667 bits (361), Expect = 0.0 Identities = 663/802 (83%), Gaps = 47/802 (6%) Strand=Plus/Plus Query 532 AGAATTGCCCATTAGAATGGCTGATTTTGGAGTGTTACATCGAAATGAGGAAAGTGGAGC 591 ||| || || || ||| |||| || |||||||||||||| || ||||||| ||||||||| Sbjct 1320 AGAGTTACCTATGAGACTGGCCGACTTTGGAGTGTTACACCGCAATGAGGCAAGTGGAGC 1379 Query 592 ACTTAGTGGAATGACCCGTGTCCGACGGTTCGTA-CAGGATGATGCACACATATTCTGTA 650 |||||||||| |||| ||||||||||||||| | ||||||||||||||||||||||||| Sbjct 1380 ACTTAGTGGATTGACTCGTGTCCGACGGTTC-CAGCAGGATGATGCACACATATTCTGTA 1438 Query 651 GAGTGGATCAGGTTGGA-GAAGAAGTGAAGGGTGTGTTGGATTTCATTGACTGTGTTTAC 709 | ||| |||||| | | ||||||| ||||||||||||| |||||||||| || ||| Sbjct 1439 CAACGGAACAGGTT-AAGGGAGAAGTGCAGGGTGTGTTGGAGTTCATTGACTACGTGTAC 1497 Query 710 AAAGTATTT-GGGTTTACCTATGAGCTAAAGCTTTCAAC---GCCAGAGAAGAAGTACCT 765 ||||| ||| |||||||||||||||||||| |||||||| ||| || |||||||||| Sbjct 1498 AAAGT-TTTCGGGTTTACCTATGAGCTAAAACTTTCAACGAGGCC--AG-AGAAGTACCT 1553 Query 766 TGGAGATTTGGAAACATGGGTTAAAGCTGAAAAGGATCTTGAAA-AAGCGCTAGATA-AT 823 |||||||||||||||||||| |||||||||| ||||| | ||| |||| |||| | | Sbjct 1554 TGGAGATTTGGAAACATGGGATAAAGCTGAAGCGGATC-TCAAAGAAGCTATAGA-AGCT 1611 Query 824 TTTGGAAAGCCATGGGT-TATAAACAAAGGAGACGGTGCATTTTACGGCCCAAAGATAGA 882 ||||||||||||| || | | ||| ||||||| ||||||||||| || ||||||||||| Sbjct 1612 TTTGGAAAGCCATTAGTGT-TGAACGAAGGAGATGGTGCATTTTATGGTCCAAAGATAGA 1670 Query 883 CATAACAGTGTCGGATGCAATGAAAAGGAAATTCCAGTGTGCTACTTTACAGCTTGATTT 942 ||| ||||| || ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1671 CATCACAGTTTCTGATGCAATGAATAGGAAATTCCAGTGTGCTACTTTACAGCTTGATTT 1730 Query 943 TCAACTTCCGGCTT-GCTTCAAACT-GAAATACATAACTaaaaaa-aa-CGAAAAGGAG- 997 |||||||||| || ||||||| || | ||||| | || | | || |||||| ||| Sbjct 1731 TCAACTTCCGA-TTCGCTTCAA-CTTGGAATACGCAGCTGAGGATGAAGCGAAAAAGAGT 1788 Query 998 AGACCTGTGATGATACATAGAGCGGTGTTGGGATCTGTTGAGCGTATGTTTGCCATATTG 1057 |||||||| |||||||||||||| |||||||||||||| || |||||||||||||||||| Sbjct 1789 AGACCTGTAATGATACATAGAGCCGTGTTGGGATCTGTGGAACGTATGTTTGCCATATTG 1848 Query 1058 TTGGAGCATTACAAAGGAATCTGGCCTTTCTGGCTTAGTCCCCGCCAGGCCATAGTTTGC 1117 ||||||||||||||||||| ||||| |||||| ||||||| || |||||||||||||| Sbjct 1849 TTGGAGCATTACAAAGGAAAATGGCCCTTCTGGATTAGTCCGCGACAGGCCATAGTTTG- 1907 Query 1118 TCTCT-T-TCAGAGGATTAT-AGTTCCTATGCA-AAACAGGTACAAAAACAGATTCAAGA 1173 || || | |||||| | | | || |||||| ||| |||| ||||| || ||| |||| Sbjct 1908 TC-CTATATCAGAGAAATCTCAGCAA-TATGCAGAAA-AGGTTCAAAAGCAAATTAAAGA 1964 Query 1174 AGCTGGGTACTATGTTGATATTGA-TGAA-AGTGACAGAA-GCATCTG-TAAAAAGGTG- 1228 ||||||| |||||||||| ||| | || || |||||| | || | |||||||||| Sbjct 1965 TGCTGGGTTCTATGTTGATGCTGACTTAACAG--ACAGAAAG-ATA-GATAAAAAGGTGC 2020 Query 1229 GCAGATGCTCGGGCT-GCACCA-TACAACTACATACTGGTCGTAGGTCAAAAAGAGGCTA 1286 | ||| |||| | || || | | ||||||||||| |||||||| ||| ||| ||| ||| Sbjct 2021 G-AGAAGCTCAG-CTTGCTC-AGTACAACTACATTCTGGTCGTGGGTGAAACAGAAGCTG 2077 Query 1287 CAACGGGACAGGTGACAGTTCG 1308 | || |||||||||| ||||| Sbjct 2078 CTACAGGACAGGTGAGTGTTCG 2099 > AT1G18130.1 | Symbols: | Class II aaRS and biotin synthetases superfamily protein | chr1:6235895-6238799 FORWARD LENGTH=498 Length=498 Score = 292 bits (158), Expect = 5e-78 Identities = 320/395 (81%), Gaps = 23/395 (6%) Strand=Plus/Plus Query 936 TTGATTTTCAACTTCCG-GCTTGCTTCAAACTGA-AATACAT-AACT-a-aaaaaaaCGA 990 |||||||||| ||| || | | |||||||||| | |||| | | || | || |||| | Sbjct 50 TTGATTTTCACCTT-CGTGATCGCTTCAAACT-AGAATA-TTCAGCTGAGAATGAAACTA 106 Query 991 --AAAGGAGAGACCTGTGATGATACATAGAGCGGTGTTGGGATCTGTTGAGCGTATGTTT 1048 | | |||||| ||||| |||||||||||||||||||| | |||||||||||| | ||| Sbjct 107 TGATA-GAGAGATCTGTGCTGATACATAGAGCGGTGTTGAGCTCTGTTGAGCGTCTTTTT 165 Query 1049 GCCATATTGTTGGAGCATTACAAAGGAATCTGGCCTTTCTGGCTTAGTCCCCGCCAGGCC 1108 |||||||||||||| || |||||||||| | || |||||||||||||||||||||||| Sbjct 166 GCCATATTGTTGGAACAGTACAAAGGAAAATTCCCCTTCTGGCTTAGTCCCCGCCAGGCC 225 Query 1109 ATAGTTTGCTCTCTTTCAGAGGATTATAGTTCCTATGCAAAACA-GGT-ACAAAAACAGA 1166 |||||||||||| |||||||||||||| ||||||| ||| | || ||| | | | || | Sbjct 226 ATAGTTTGCTCTGTTTCAGAGGATTATCGTTCCTACGCAGA-CAAGGTGAGAGAT-CAAA 283 Query 1167 TTCAAGAAGCTGGGTACTATGTTGATATTGATGA-AA-GTGACAGAAGCATCTGTAAAAA 1224 |||| |||||||| |||||||||||| |||| | || | || |||| | || || | || Sbjct 284 TTCACGAAGCTGGCTACTATGTTGATGTTGAC-ACAACG-GATAGAAACGTCAGTGACAA 341 Query 1225 GGTGGCA-GATGCTCGGGCTGCAC-CATACAACTACATACTGGTCGTAGGTCAAAAAGAG 1282 |||| || || |||| || ||||| | |||||||||||||| ||||| ||| | ||||| Sbjct 342 GGTG-CAAGAAGCTCAGGTTGCACAC-TACAACTACATACTAGTCGTGGGTGATGAAGAG 399 Query 1283 GCTACAACGGGACAGGTGACAGTTCGGCTCAGAGA 1317 |||| ||||||||||||||| ||| |||| ||||| Sbjct 400 GCTAGAACGGGACAGGTGACTGTTTGGCTTAGAGA 434 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 75451419135 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5