BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472010
Length=1529
Score E
Sequences producing significant alignments: (Bits) Value
AT1G17960.1 | Symbols: | Threonyl-tRNA synthetase | chr1:61808... 2161 0.0
AT5G26830.1 | Symbols: | Threonyl-tRNA synthetase | chr5:94372... 667 0.0
AT1G18130.1 | Symbols: | Class II aaRS and biotin synthetases ... 292 5e-78
> AT1G17960.1 | Symbols: | Threonyl-tRNA synthetase | chr1:6180896-6183806
REVERSE LENGTH=1565
Length=1565
Score = 2161 bits (1170), Expect = 0.0
Identities = 1418/1535 (92%), Gaps = 27/1535 (2%)
Strand=Plus/Plus
Query 6 CTTCGTTCTCTGCTCCTCCATCGATGGCGAATAATCATCATCCCAAGGATGAGGCTTATC 65
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 47 CTTCGTTCTCTGCTCATCCATCGATGGCGAATAATCATCATCCCAAGGATGAGGCTTATC 106
Query 66 TCTCATCCGTCATCCCCAAGCGTATCAGGATCTTCGAGGAAATCCAAGCCGAACAACTTG 125
||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||
Sbjct 107 TCTCATCCGTCATCCCCAAGCGTATCAGGCTCTTCGAGGAAATCCAAGCCGAGCAGCTTG 166
Query 126 AGCAGCTTCAATCTCGGCCACACGATCCGATCAAGATCACTCTTCTCCCAGACGGTATCG 185
|||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||
Sbjct 167 AGCAGCTTCAATCTCGGCCACACGATCCAATCAAGATTACTCTTCTCCCCGACGGTATCG 226
Query 186 TGAAAGAGGGGAAG-AGATGGGAGACAACTCCAATGGATATCGCAGTGCAGATTTCTAAG 244
|||||| || ||| ||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 227 AGAAAGAAGG-AAGGAGATGGGAGACCTCTCCAATGGACATCGCAGTGCAGATTTCTAAG 285
Query 245 GGTTTCGCCAAATCTGCTCTGGTTTCTTCGGTTGATCATGTCCTGTGGGACATGAATAGG 304
||||| || |||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 286 GGTTTAGCAAAATCTGCTCTGGTTTCTTCGGTTAATCATGTCTTGTGGGACATGAATAGG 345
Query 305 CCCCTGGAAGGTGATTGTTCGCT-AGAGATTTTCGGATTTGACAGCGACCAAGGCCGTGA 363
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
Sbjct 346 CCCCTGGAAGGTGATTGTTC-CTTAGAGATTTTCGGATTTGACAGCGACCAAGGCCGTAA 404
Query 364 TACTTTCTGGCATTCTAGTGCTCTCATTCTAGGTCACGCTCTCGAGCAGGAGTATGGATG 423
|||||||||||||||||| || | ||||||||| || |||||||||||||||||||||||
Sbjct 405 TACTTTCTGGCATTCTAGCGCCCACATTCTAGGCCAGGCTCTCGAGCAGGAGTATGGATG 464
Query 424 CAAGCTATGCATTGGACCCTGCAAAACCATAGATGAGGGCTTCTTTTGCGATGCATTTTA 483
||||||||| |||||||||||| || ||| |||||| ||||||| || |||| || ||||
Sbjct 465 CAAGCTATGTATTGGACCCTGCGAACCCAGAGATGAAGGCTTCTATTACGATTCACTTTA 524
Query 484 TCACGGCGAGCTGGGCTTAAACGACAATCATTTTCCAAACATCGAAGCAGAATTGCCCAT 543
| | ||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 525 TTATGGCGAGCTGGGATTAAACGACAATCATTTTCCAAACATCGAAGCAAAATTACCCAT 584
Query 544 TAGAATGGCTGATTTTGGAGTGTTACATCGAAATGAGGAAAGTGGAGCACTTAGTGGAAT 603
||||||||| || |||||||||||||| ||||||||||| |||||||||||| |||||||
Sbjct 585 TAGAATGGCCGAATTTGGAGTGTTACACCGAAATGAGGACAGTGGAGCACTTGGTGGAAT 644
Query 604 GACCCGTGTCCGACGGTTCGTACAGGATGATGCACACATATTCTGTAGAGTGGATCAGGT 663
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 645 GACCCGTGTCCGACGGTTTGTACAGGATGATGCACACATATTCTGTAGAGTGGATCAGGT 704
Query 664 TGGAG-AAGAAGTGAAGGGTGTGTTGGATTTCATTGACTGTGTTTACA-AAGTATTTGGG 721
|| || ||||||||||||||||||||||||||||||||| |||||||| || ||||||||
Sbjct 705 TG-AGGAAGAAGTGAAGGGTGTGTTGGATTTCATTGACTATGTTTACAGAA-TATTTGGG 762
Query 722 TTTACCTATGAGCTAAAGCTTTCAACGCCAGAGA-AGAAGTA-C-C-TTGGAGATTTGGA 777
||||||||||| |||| |||||||||| || | | ||| | | | |||||||||||||
Sbjct 763 TTTACCTATGAACTAACGCTTTCAACG--AG-GCCA-AAGGATCACATTGGAGATTTGGA 818
Query 778 AACATGGGTTAAAGCTGAAAAGGATCTTGAAAAAGCGCTAGATAATTTTGGAAAGCCATG 837
|||||||| |||||||||||| |||||||||||||| |||||| ||||||||||||||||
Sbjct 819 AACATGGGCTAAAGCTGAAAATGATCTTGAAAAAGCTCTAGATGATTTTGGAAAGCCATG 878
Query 838 GGTTATAAACAAAGGAGACGGTGCATTTTACGGCCCAAAGATAGACATAACAGTGTCGGA 897
||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 879 GGTTATAAAGGAAGGAGACGGTGCATTTTATGGCCCAAAGATAGACATAACAGTGTCTGA 938
Query 898 TGCAATGAAAAGGAAATTCCAGTGTGCTACTTTACAGCTTGATTTTCAACTTCCGGCTTG 957
||| | ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 939 TGCCAGGAATAGGAAATTCCAGTGTGCTACTATACAGCTTGATTTTCAACTTCCGGCTTG 998
Query 958 CTTCAAACTGAAATACATAACTaaaaaaaaCGAAAAGGAGAG-ACCTGTGATGATACATA 1016
|||||||||||||||| ||| | |||||||||||| |||| | |||||||||||||||||
Sbjct 999 CTTCAAACTGAAATACCTAAGTGAAAAAAACGAAATGGAG-GCACCTGTGATGATACATA 1057
Query 1017 GAGCGGTGTTGGGATCTGTTGAGCGTATGTTTGCCATATTGTTGGAGCATTACAAAGGAA 1076
| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 1058 GTGCGGTGTTGGGATCTATTGAGCGTATGTTTGCCATATTGTTGGAACATTACAAAGGAA 1117
Query 1077 TCTGGCCTTTCTGGCTTAGTCCCCGCCAGGCCATAGTTTGCTCTCTTTCAGAGGATTATA 1136
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1118 TTTGGCCCTTCTGGCTTAGTCCCCGCCAGGCCATAGTTTGCTCTCTTTCAGAGGATTGTA 1177
Query 1137 GTTCCTATGCAAAACAGGTACAAAAACAGATTCAA-GAAG-CTGGGTACTATGTTGATAT 1194
|||||||||| ||||||||||||||||||||| || |||| | |||||||||||||||||
Sbjct 1178 GTTCCTATGCCAAACAGGTACAAAAACAGATT-AATGAAGTC-GGGTACTATGTTGATAT 1235
Query 1195 TGATGAAAGTGACAGAAGCATCTGTAAAAAGGTGGCAGATGCTCGGGCTGCACCATACAA 1254
||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||
Sbjct 1236 TGATGAAAGTGACAGAAGCCTCCGTAAAAAGGTGGCAGATGCTCGGGATGCACCATACAA 1295
Query 1255 CTACATACTGGTCGTAGGTCAAAAAGAGGCTACAACGGGACAGGTGACAGTTCGGCTCAG 1314
||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||
Sbjct 1296 CTACATACTGGTCGTAGGTCAAAAAGAGGTTGCAACTGGACAGGTGACAGTTCGGCTCAG 1355
Query 1315 AGAGGACCCTGCAGGCCGTAAAGACTTGCCAGAGATGAGCATCGACAGTTTGCTGGATGA 1374
||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1356 AGAGGACCCTGAAGGCCGTAAAGACTTGCCAGAGATGAGCATCGAAAGTTTGCTTGATGA 1415
Query 1375 ATTCAAGTTCAAGACAATCAACTTTCTCTGAGATCCGATCTGTTTATGGGTTAAAAATTC 1434
|||||||||||||||| ||||||| |||||||||||||| |||||||| |||||| |||
Sbjct 1416 ATTCAAGTTCAAGACAGTCAACTTCCTCTGAGATCCGAT--GTTTATGGTTTAAAATTTC 1473
Query 1435 ATTTTCCTGTTGATGATGAATGTATTTCTTTTATAATATAAGTCTTTTTCGTTGTACCAA 1494
||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 1474 ATTTTTCTGTTGATGATGAATGTATTTCTTTTATAATG---GTCTTTTTCATTGTACCAA 1530
Query 1495 GACATATTTTGGAATAAAAGGTACTGTTGAAATAT 1529
|||| |||||||||||||| ||||| ||||| |||
Sbjct 1531 GACACATTTTGGAATAAAATGTACTATTGAAGTAT 1565
> AT5G26830.1 | Symbols: | Threonyl-tRNA synthetase | chr5:9437297-9441779
FORWARD LENGTH=2395
Length=2395
Score = 667 bits (361), Expect = 0.0
Identities = 663/802 (83%), Gaps = 47/802 (6%)
Strand=Plus/Plus
Query 532 AGAATTGCCCATTAGAATGGCTGATTTTGGAGTGTTACATCGAAATGAGGAAAGTGGAGC 591
||| || || || ||| |||| || |||||||||||||| || ||||||| |||||||||
Sbjct 1320 AGAGTTACCTATGAGACTGGCCGACTTTGGAGTGTTACACCGCAATGAGGCAAGTGGAGC 1379
Query 592 ACTTAGTGGAATGACCCGTGTCCGACGGTTCGTA-CAGGATGATGCACACATATTCTGTA 650
|||||||||| |||| ||||||||||||||| | |||||||||||||||||||||||||
Sbjct 1380 ACTTAGTGGATTGACTCGTGTCCGACGGTTC-CAGCAGGATGATGCACACATATTCTGTA 1438
Query 651 GAGTGGATCAGGTTGGA-GAAGAAGTGAAGGGTGTGTTGGATTTCATTGACTGTGTTTAC 709
| ||| |||||| | | ||||||| ||||||||||||| |||||||||| || |||
Sbjct 1439 CAACGGAACAGGTT-AAGGGAGAAGTGCAGGGTGTGTTGGAGTTCATTGACTACGTGTAC 1497
Query 710 AAAGTATTT-GGGTTTACCTATGAGCTAAAGCTTTCAAC---GCCAGAGAAGAAGTACCT 765
||||| ||| |||||||||||||||||||| |||||||| ||| || ||||||||||
Sbjct 1498 AAAGT-TTTCGGGTTTACCTATGAGCTAAAACTTTCAACGAGGCC--AG-AGAAGTACCT 1553
Query 766 TGGAGATTTGGAAACATGGGTTAAAGCTGAAAAGGATCTTGAAA-AAGCGCTAGATA-AT 823
|||||||||||||||||||| |||||||||| ||||| | ||| |||| |||| | |
Sbjct 1554 TGGAGATTTGGAAACATGGGATAAAGCTGAAGCGGATC-TCAAAGAAGCTATAGA-AGCT 1611
Query 824 TTTGGAAAGCCATGGGT-TATAAACAAAGGAGACGGTGCATTTTACGGCCCAAAGATAGA 882
||||||||||||| || | | ||| ||||||| ||||||||||| || |||||||||||
Sbjct 1612 TTTGGAAAGCCATTAGTGT-TGAACGAAGGAGATGGTGCATTTTATGGTCCAAAGATAGA 1670
Query 883 CATAACAGTGTCGGATGCAATGAAAAGGAAATTCCAGTGTGCTACTTTACAGCTTGATTT 942
||| ||||| || ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1671 CATCACAGTTTCTGATGCAATGAATAGGAAATTCCAGTGTGCTACTTTACAGCTTGATTT 1730
Query 943 TCAACTTCCGGCTT-GCTTCAAACT-GAAATACATAACTaaaaaa-aa-CGAAAAGGAG- 997
|||||||||| || ||||||| || | ||||| | || | | || |||||| |||
Sbjct 1731 TCAACTTCCGA-TTCGCTTCAA-CTTGGAATACGCAGCTGAGGATGAAGCGAAAAAGAGT 1788
Query 998 AGACCTGTGATGATACATAGAGCGGTGTTGGGATCTGTTGAGCGTATGTTTGCCATATTG 1057
|||||||| |||||||||||||| |||||||||||||| || ||||||||||||||||||
Sbjct 1789 AGACCTGTAATGATACATAGAGCCGTGTTGGGATCTGTGGAACGTATGTTTGCCATATTG 1848
Query 1058 TTGGAGCATTACAAAGGAATCTGGCCTTTCTGGCTTAGTCCCCGCCAGGCCATAGTTTGC 1117
||||||||||||||||||| ||||| |||||| ||||||| || ||||||||||||||
Sbjct 1849 TTGGAGCATTACAAAGGAAAATGGCCCTTCTGGATTAGTCCGCGACAGGCCATAGTTTG- 1907
Query 1118 TCTCT-T-TCAGAGGATTAT-AGTTCCTATGCA-AAACAGGTACAAAAACAGATTCAAGA 1173
|| || | |||||| | | | || |||||| ||| |||| ||||| || ||| ||||
Sbjct 1908 TC-CTATATCAGAGAAATCTCAGCAA-TATGCAGAAA-AGGTTCAAAAGCAAATTAAAGA 1964
Query 1174 AGCTGGGTACTATGTTGATATTGA-TGAA-AGTGACAGAA-GCATCTG-TAAAAAGGTG- 1228
||||||| |||||||||| ||| | || || |||||| | || | ||||||||||
Sbjct 1965 TGCTGGGTTCTATGTTGATGCTGACTTAACAG--ACAGAAAG-ATA-GATAAAAAGGTGC 2020
Query 1229 GCAGATGCTCGGGCT-GCACCA-TACAACTACATACTGGTCGTAGGTCAAAAAGAGGCTA 1286
| ||| |||| | || || | | ||||||||||| |||||||| ||| ||| ||| |||
Sbjct 2021 G-AGAAGCTCAG-CTTGCTC-AGTACAACTACATTCTGGTCGTGGGTGAAACAGAAGCTG 2077
Query 1287 CAACGGGACAGGTGACAGTTCG 1308
| || |||||||||| |||||
Sbjct 2078 CTACAGGACAGGTGAGTGTTCG 2099
> AT1G18130.1 | Symbols: | Class II aaRS and biotin synthetases
superfamily protein | chr1:6235895-6238799 FORWARD LENGTH=498
Length=498
Score = 292 bits (158), Expect = 5e-78
Identities = 320/395 (81%), Gaps = 23/395 (6%)
Strand=Plus/Plus
Query 936 TTGATTTTCAACTTCCG-GCTTGCTTCAAACTGA-AATACAT-AACT-a-aaaaaaaCGA 990
|||||||||| ||| || | | |||||||||| | |||| | | || | || |||| |
Sbjct 50 TTGATTTTCACCTT-CGTGATCGCTTCAAACT-AGAATA-TTCAGCTGAGAATGAAACTA 106
Query 991 --AAAGGAGAGACCTGTGATGATACATAGAGCGGTGTTGGGATCTGTTGAGCGTATGTTT 1048
| | |||||| ||||| |||||||||||||||||||| | |||||||||||| | |||
Sbjct 107 TGATA-GAGAGATCTGTGCTGATACATAGAGCGGTGTTGAGCTCTGTTGAGCGTCTTTTT 165
Query 1049 GCCATATTGTTGGAGCATTACAAAGGAATCTGGCCTTTCTGGCTTAGTCCCCGCCAGGCC 1108
|||||||||||||| || |||||||||| | || ||||||||||||||||||||||||
Sbjct 166 GCCATATTGTTGGAACAGTACAAAGGAAAATTCCCCTTCTGGCTTAGTCCCCGCCAGGCC 225
Query 1109 ATAGTTTGCTCTCTTTCAGAGGATTATAGTTCCTATGCAAAACA-GGT-ACAAAAACAGA 1166
|||||||||||| |||||||||||||| ||||||| ||| | || ||| | | | || |
Sbjct 226 ATAGTTTGCTCTGTTTCAGAGGATTATCGTTCCTACGCAGA-CAAGGTGAGAGAT-CAAA 283
Query 1167 TTCAAGAAGCTGGGTACTATGTTGATATTGATGA-AA-GTGACAGAAGCATCTGTAAAAA 1224
|||| |||||||| |||||||||||| |||| | || | || |||| | || || | ||
Sbjct 284 TTCACGAAGCTGGCTACTATGTTGATGTTGAC-ACAACG-GATAGAAACGTCAGTGACAA 341
Query 1225 GGTGGCA-GATGCTCGGGCTGCAC-CATACAACTACATACTGGTCGTAGGTCAAAAAGAG 1282
|||| || || |||| || ||||| | |||||||||||||| ||||| ||| | |||||
Sbjct 342 GGTG-CAAGAAGCTCAGGTTGCACAC-TACAACTACATACTAGTCGTGGGTGATGAAGAG 399
Query 1283 GCTACAACGGGACAGGTGACAGTTCGGCTCAGAGA 1317
|||| ||||||||||||||| ||| |||| |||||
Sbjct 400 GCTAGAACGGGACAGGTGACTGTTTGGCTTAGAGA 434
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75451419135
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5