BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472021
Length=1616
Score E
Sequences producing significant alignments: (Bits) Value
AT1G18040.1 | Symbols: CDKD1;3, AT;CDCKD;3, CAK2AT | cyclin-dep... 2361 0.0
AT1G73690.1 | Symbols: CDKD1;1, AT;CDKD;1, CAK3AT | cyclin-depe... 1068 0.0
AT1G18030.1 | Symbols: | Protein phosphatase 2C family protein... 159 6e-38
> AT1G18040.1 | Symbols: CDKD1;3, AT;CDCKD;3, CAK2AT | cyclin-dependent
kinase D1;3 | chr1:6206871-6209500 REVERSE LENGTH=1634
Length=1634
Score = 2361 bits (1278), Expect = 0.0
Identities = 1530/1645 (93%), Gaps = 44/1645 (3%)
Strand=Plus/Plus
Query 1 GCGTCTGCAAACGCGCCAACGGCTACTTTTTCTCCGGAGCCGGAGCTCCCAACGCTGAAA 60
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 1 GCGTCTGCAAACGCGCCAACGGCTACTTTTTCTCCGGAGCCGGAGCTCTCAAAGCTGAAA 60
Query 61 CCCTaaaaaaaTCTCCCGGTATCTTCCTCATCGTCGATTTTACCCAA--T----T----- 109
|||| ||| | |||||||||||||||||||||||||||||| ||| | |
Sbjct 61 CCCT---AAATTTTCCCGGTATCTTCCTCATCGTCGATTTTACTCAATTTAGAATAAAAA 117
Query 110 TCGGAAAGCAATCGAATTCTAGTGA-GGGAACCAAAGTGAAGTAAGAAGA-AAGAGAGA- 166
|||||||||||||||||||||| || | ||| || |||| ||| ||| | | | ||
Sbjct 118 TCGGAAAGCAATCGAATTCTAGCGACGTGAA-TTAA--GAAGAAAG-AGAGAGGCGCGAT 173
Query 167 -A---A-----ACCCGAAAATGCCGGAGAT---GGAGCAGCCAAAGAAAGTTGCTGATAG 214
| | | ||||| ||| | || |||||||||||||||||||||||||||
Sbjct 174 TATTGAGTGGGTTCTGAAAAACCCGAAAATGCCGGAGCAGCCAAAGAAAGTTGCTGATAG 233
Query 215 GTATCTCAAGCAAGAGGTTCTTGGTCAAGGTACCTATGGAGTCGTCTTCAAGGCCACTGA 274
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 234 GTATCTCAAGCAAGAGGTTCTTGGGCAAGGTACCTATGGAGTCGTCTTCAAAGCCACTGA 293
Query 275 TACTAAGACGGAACAAACTGTAGCAATCAAGAAGATAAGGCTTGGTAAACAAAGGGAAGG 334
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 294 TACTAAGACGGAACAAACTGTAGCAATTAAGAAGATAAGGCTTGGTAAACAAAGAGAAGG 353
Query 335 TGTAAATATTACAGCTCTCAGGGAAATCAAAATGCTCAAAGAGCTTAAGCATCCTCATAT 394
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 354 TGTAAATATTACAGCTCTCAGAGAAATCAAAATGCTCAAAGAGCTAAAGCATCCTCATAT 413
Query 395 AATTCTGCTCATTGATGCATTTCCTCACAAGGAAAACTTGCATCTTGTCTTTGAGTTCAT 454
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 TATTCTGCTCATTGATGCATTTCCTCACAAGGAAAACTTGCATCTTGTCTTTGAGTTCAT 473
Query 455 GGAGACTGACCTCGAAGCTGTCATTCGCGATTCCAACATATTCCTCTCACCCGCCGACAT 514
|||||||||||||||||| || ||||||||||| ||||| ||||||||||||||||||||
Sbjct 474 GGAGACTGACCTCGAAGCAGTTATTCGCGATTCTAACATTTTCCTCTCACCCGCCGACAT 533
Query 515 CAAATCTTACCTCCTAATGACATTTAAAGGACTTGCTTATTGCCACGATAAATGGGTTTT 574
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 TAAATCCTACCTCCTAATGACATTTAAAGGACTTGCTTATTGCCACGATAAATGGGTTTT 593
Query 575 GCACAGGGATATGAAGCCAAATAACTTGTTAATAGGAGTTGATGGACAGCTGAAGCTTGC 634
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 594 GCACAGGGATATGAAGCCAAATAACTTGTTAATAGGAGTTGATGGACAGCTTAAGCTTGC 653
Query 635 AGATTTTGGCTTAGCACGTATATTTGGTAGTCCTAATCGTAAATTTACCCACCAGGTGTT 694
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 654 AGATTTTGGCTTAGCACGTATATTTGGTAGTCCAAATCGTAAGTTTACCCACCAGGTGTT 713
Query 695 TGCTAGATGGTACAGAGCACCAGAACTTTTGTTTGGTGCAAAACAATATGGTGCTGCAGT 754
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 TGCTAGATGGTACAGAGCACCAGAACTTTTGTTTGGTGCAAAACAATATGGTGCTGCAGT 773
Query 755 TGATGTGTGGGCCGTTGGCTGCATATTCGCCGAACTTCTACTGCGCAGACCATTTCTTCA 814
|||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 774 TGATGTTTGGGCCGTTGCCTGCATATTCGCCGAACTTCTACTACGCAGACCATTTCTTCA 833
Query 815 GGGAAACAGTGATATTGATCAATTAAGCAAAATATTTGCTGCTTTTGGGACACCAAAAGC 874
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 GGGAAACAGTGATATTGATCAATTAAGCAAAATATTTGCTGCTTTTGGGACACCAAAAGC 893
Query 875 AGATCAGTGGCCGGATGTAACAAAGCTTCCAGATTATGTAGAGTATCAATTTGTCGCGGC 934
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||
Sbjct 894 AGATCAGTGGCCGGATTTAACAAAGCTTCCAGATTATGTAGAGTATCAATTTGTCCCTGC 953
Query 935 ACCGTCTCTACGTTCTTTATTCCCAGCAGTTAGTGAAGATGCTCTCGACTTGTTGTCCAA 994
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 954 ACCGTCTCTACGTTCTTTATTCCCAGCAGTTAGTGATGATGCTCTCGACTTGTTGTCCAA 1013
Query 995 AATGTTTACCTATGACCCAAAGGCCAGAATTTCCATAAAGCAGGCTCTAGAACACAGATA 1054
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||
Sbjct 1014 AATGTTTACCTATGACCCAAAGGCTAGAATTTCCATTAAGCAGGCTCTAGAACACAGGTA 1073
Query 1055 CTTCACTTCTGCACCTGCTCCTACTGACCCGGCTAAGCTCCCAAAGCCCGTTCATAAGCA 1114
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1074 CTTCACTTCTGCACCTGCTCCTACTGACCCGGCTAAGCTCCCAAAGCCCGTTCCTAAGCA 1133
Query 1115 GGATGGTAAATCCTCTTACGGTAAACATGAAGCCATTACAGTGCTATCACCACCACGTAA 1174
|||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 1134 GGATGGTAAATCATCTTACGGTAAACATGAGGCCATTACAGTGCAATCACCACCACGTAA 1193
Query 1175 GTTTAGAAGAGTGATGCCTGAGCGTGGGAGGGTTGATAGTTTAAAGGCTCATGTTGACAA 1234
| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 1194 GCTTAGAAGAGTGATGCCTGAGCGTGGGAGGGTTGATAGTTTGAAGTCTCATGTTGACAA 1253
Query 1235 GGATCAACAAGCACCCATGTCATTAGATTTTACCATCCTCGCTGAGCGACCTCCAAACCG 1294
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1254 GGATCAACAAGCACCCATGTCATTAGATTTTACCATCCTCGCTGAGCGACCTCCAAACAG 1313
Query 1295 GCCAACAATCACCAGTGCTGATAGATCTCATCTGAAGAGGAAACTCGATCTTGAGTTCCA 1354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 GCCAACAATCACCAGTGCTGATAGATCTCATCTGAAGAGGAAACTCGATCTTGAGTTCCA 1373
Query 1355 ATAAGACTGTTTGTTTTGCACTCTTGCCTCTTCTCTTACCTTCTCCATTTTCATGTTCTG 1414
|||||||||| ||| ||||||||| | |||| | |||||||||||||||||||||
Sbjct 1374 GTAAGACTGTTGGTTATGCACTCTT-C-TCTT-----AGCTTCTCCATTTTCATGTTCTG 1426
Query 1415 GTGAGACCAAAACATTCTTAAGTTGTCAATTTACTGCTGCTTGTGTAAGCTGGCGATTTA 1474
|||| |||| | |||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1427 GTGAAACCACACCATTGTTAAGTTGTCAATTTACTGCTGCTTGTGTAATCTGGCGATTTA 1486
Query 1475 TTCTTTTTCATTTTTAGCTTAATTACAAACCAGAGGGATCCTAA-ATTCACAATGCTAAT 1533
||||||| ||| |||||||| ||||||||||||||||| ||| | |||||||||| ||||
Sbjct 1487 TTCTTTTCCATATTTAGCTTGATTACAAACCAGAGGGA-CCTTAGATTCACAATGATAAT 1545
Query 1534 ATTTCGTTGTCCCATAGGCTTTAT-TT-ATTGTAAACTGATCATACTGTACTACGAAGTC 1591
|||| ||||||||||||||||| | || ||||||||||||||||||||||||| ||||||
Sbjct 1546 ATTTTGTTGTCCCATAGGCTTTTTATTCATTGTAAACTGATCATACTGTACTATGAAGTC 1605
Query 1592 TATGATTATAAAGCTTTCTACTTTT 1616
|||||||||||||||||||||||||
Sbjct 1606 TATGATTATAAAGCTTTCTACTTTT 1630
> AT1G73690.1 | Symbols: CDKD1;1, AT;CDKD;1, CAK3AT | cyclin-dependent
kinase D1;1 | chr1:27714948-27717281 FORWARD LENGTH=1625
Length=1625
Score = 1068 bits (578), Expect = 0.0
Identities = 1012/1216 (83%), Gaps = 52/1216 (4%)
Strand=Plus/Plus
Query 180 CCGGAGATGGAGCAGCCAAAGAAAGTTGCTGATAGGTATCTCAAGCAAGAGGTTCTTGGT 239
||||||||||| ||||| ||||||||||||||||||||||| |||| |||||||||||||
Sbjct 160 CCGGAGATGGAACAGCCGAAGAAAGTTGCTGATAGGTATCTAAAGCGAGAGGTTCTTGGT 219
Query 240 CAAGGTACCTATGGAGTCGTCTTCAAGGCCACTGATACTAAG-ACGGAACAAACTGTAGC 298
|||||||| ||||||||||||||||| || |||||||| ||| | || | ||||||||||
Sbjct 220 CAAGGTACTTATGGAGTCGTCTTCAAAGCTACTGATACAAAGAATGG-AGAAACTGTAGC 278
Query 299 AATCAAGAAGATAAGGCTTGGTAAACA-AAGGGAAGGTGTAAATATTACAGCTCTCAGGG 357
|||||||| ||||| ||||||||| | || |||||||| ||| | |||||||| || |
Sbjct 279 GATCAAGAAAATAAGACTTGGTAAAGAGAA-AGAAGGTGTGAATGTAACAGCTCTTAGAG 337
Query 358 AAATCAAAATGCTCAAAGAGCTTAAGCATCCTCATATAATTCTGCTCATTGATGCATTTC 417
|||||||| | || ||||||||||||||||| ||||||||| | | |||||||| ||||
Sbjct 338 AAATCAAATTACTTAAAGAGCTTAAGCATCCACATATAATTGAGTTGATTGATGCGTTTC 397
Query 418 CTCACAAGGAAAACTTGCATC-TTGTCTTTGAGTTCATGGAGACTGACCTCGAAGCTGTC 476
|||||||||| || ||||| | | || |||||||||||||||||||| |||||||| ||
Sbjct 398 CTCACAAGGAGAATTTGCA-CATCGTGTTTGAGTTCATGGAGACTGATCTCGAAGCAGTT 456
Query 477 ATTCGCGATTC-CAA-CATAT-TCCTCTCACCCGCCGACATCAAATCTTACCTCCTAATG 533
|| || || || || | | | | || || || | || ||||||||||||||| ||||
Sbjct 457 ATCCGAGA-TCGTAATC-TCTAT-CTTTCGCCTGGTGATGTCAAATCTTACCTCCAAATG 513
Query 534 ACATTTAAAGGACTTGCTTATTGCCACGATAAATGGGTTTTGCACAGGGATATGAAGCCA 593
| ||| ||||| |||| |||||||| | ||||||||| ||||||| ||||||||||||
Sbjct 514 ATATTGAAAGGTCTTGAATATTGCCATGGCAAATGGGTTCTGCACAGAGATATGAAGCCA 573
Query 594 AATAACTTGTTAATAGGAGTTGATGGACAGCTGAAGCTTGCAGATTTTGGCTTAGCACGT 653
|| |||||||| |||||| ||||||||||||| |||||||||||||| |||||||||
Sbjct 574 AACAACTTGTTGATAGGACCCAATGGACAGCTGAAACTTGCAGATTTTGGGTTAGCACGT 633
Query 654 ATATTTGGTAGTCCTA-ATCGTAAATTTACCCACCAGGTGTTTGCTAGATGGTACAGAGC 712
||||||||||| || | |||||| ||||||||||||||||||||||||||||| |||||
Sbjct 634 ATATTTGGTAG-CCCAGGTCGTAAGTTTACCCACCAGGTGTTTGCTAGATGGTATAGAGC 692
Query 713 ACCAGAACTTTTGTTTGGTGCAAAACAATATGGTGCTGCAGTTGATGTGTGGGCCGTTGG 772
||| |||||||||||||||||||||||||||| || |||||||||||| ||||| | |||
Sbjct 693 ACCTGAACTTTTGTTTGGTGCAAAACAATATGATGGTGCAGTTGATGTTTGGGCTGCTGG 752
Query 773 CTGCATATTCGCCGAACTTCTACTGCGCAGACCATTTCTTCAGGGAAACAGTGATATTGA 832
|||||| || || ||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 753 CTGCATTTTTGCTGAACTTCTATTACGCAGACCATTTCTTCAGGGAAACAGTGATATTGA 812
Query 833 TCAATTAAGCAAAATATTTGCTGCTTTTGGGACACCAAAAGCAGATCAGTGGCCGGATGT 892
||||||||||||||| |||||||| |||||||| |||||||||||||||||||| || |
Sbjct 813 TCAATTAAGCAAAATCTTTGCTGCCTTTGGGACTCCAAAAGCAGATCAGTGGCCTGACAT 872
Query 893 AA-CAAAGC-TTCCAGATTATGTAGAGTATCAATTTGTCGCGGCACCGTCTCTACGTTCT 950
| | || |||| |||||||||||||||||||||||| | || || ||| ||||||||
Sbjct 873 GATCT--GCCTTCCTGATTATGTAGAGTATCAATTTGTCCCTGCTCCTTCTTTACGTTCT 930
Query 951 TTATTCCCAGCAGTTAGTGAAGATGCTCTCGACTTGTTGTCCAAA-ATGTTTACCTATGA 1009
||| ||||| | |||||||| |||||| | || |||||||| ||| ||||| ||||||||
Sbjct 931 TTACTCCCAACGGTTAGTGAGGATGCTTTAGATTTGTTGTC-AAAGATGTTCACCTATGA 989
Query 1010 CCCAAAGGCCAGAATTTCCATAAAGCAGGCTCTAGAACACAGATACTTCACTTCTGCACC 1069
||| ||| | ||||| || || ||||||||||| ||||||| |||||||| ||||||||
Sbjct 990 CCCCAAGTCTAGAATATCGATTCAGCAGGCTCTAAAACACAGGTACTTCACATCTGCACC 1049
Query 1070 TGCTCCTACTGACCCGGCTAA-GCTCCCAAAGCCC-GTT-CATAAGCAGGATGGTAAATC 1126
| | ||||||||||| ||| |||||||| | || ||| | ||||| |||| ||| ||
Sbjct 1050 TTCACCTACTGACCCTT-TAAAGCTCCCAA-GACCAGTTTCC-AAGCAAGATGCTAAGTC 1106
Query 1127 CTCTTACGGTAAACATGAAGCCATTACAGTGCTATCACCACCACGTAAGTTTAGAAGAGT 1186
||| | |||||| ||||||||||| |||||| |||||| ||| |||||||||||||||
Sbjct 1107 ATCTGATAGTAAACTTGAAGCCATTAAAGTGCTGTCACCAGCACATAAGTTTAGAAGAGT 1166
Query 1187 GATGCCTGAGCGTGGGAGGGT-TGATA--G-TTTAAAGG-C-----TC---ATGT--TGA 1231
||||||||| || || | | | || || | ||| |||| | | |||| |||
Sbjct 1167 GATGCCTGACCGAGGAAAG-TCTGGTAATGGTTTCAAGGACCAGAGTGTTGATGTCATGA 1225
Query 1232 --CAAG---G--ATCA---ACAAGCACCCATGTCATTAGATTTTACCATCCTCGCTGAGC 1281
|||| | || | ||||||||| ||||| |||||||| |||||| | |||||||
Sbjct 1226 GACAAGCTAGCCATGATGGACAAGCACCAATGTCTTTAGATTTCACCATCTTAGCTGAGC 1285
Query 1282 GACCTCCAAACCGGCCAACAATCACCAGTGCTGATAGATCTCATCTGAAGAGGAAACTCG 1341
| || |||||||| ||||| ||||||||||| |||||||||||||||||||||||||| |
Sbjct 1286 GGCCACCAAACCGACCAACCATCACCAGTGCAGATAGATCTCATCTGAAGAGGAAACTTG 1345
Query 1342 ATCTTGAGTTCCAATA 1357
|||| ||||||| |||
Sbjct 1346 ATCTCGAGTTCCTATA 1361
> AT1G18030.1 | Symbols: | Protein phosphatase 2C family protein
| chr1:6204343-6206988 FORWARD LENGTH=1423
Length=1423
Score = 159 bits (86), Expect = 6e-38
Identities = 106/115 (92%), Gaps = 4/115 (3%)
Strand=Plus/Minus
Query 1505 CAGAGGGATCC-TAAATTCACAATGCTAATATTTCGTTGTCCCATAGGC--TTTATTTAT 1561
|||||||| || || |||||||||| |||||||| |||||||||||||| |||||| ||
Sbjct 1423 CAGAGGGA-CCTTAGATTCACAATGATAATATTTTGTTGTCCCATAGGCTTTTTATTCAT 1365
Query 1562 TGTAAACTGATCATACTGTACTACGAAGTCTATGATTATAAAGCTTTCTACTTTT 1616
||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1364 TGTAAACTGATCATACTGTACTATGAAGTCTATGATTATAAAGCTTTCTACTTTT 1310
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79818866550
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5