BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472022
Length=2128
Score E
Sequences producing significant alignments: (Bits) Value
AT1G18070.3 | Symbols: | Translation elongation factor EF1A/in... 1786 0.0
> AT1G18070.3 | Symbols: | Translation elongation factor EF1A/initiation
factor IF2gamma family protein | chr1:6213777-6218340
REVERSE LENGTH=2120
Length=2120
Score = 1786 bits (967), Expect = 0.0
Identities = 1078/1130 (95%), Gaps = 13/1130 (1%)
Strand=Plus/Plus
Query 1 CAAAAATTAGAGCCTCATAGAAGCGGCACTAGTTCGTTTGGTGGATCCCTTAACGCGctt 60
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6 CAAAAATGAGAGCCTCATAGAAGCGGCACTAGTTCGTTTGGTGGATCCCTTAACGCG--- 62
Query 61 cttcttcttctttctctttcGCGAGATAACCTAGAAAACCTTTTCATTTCGTTCTCTTCT 120
|||||||||| | ||||||||||||||||||||||| ||||||| |||||||| |||||
Sbjct 63 CTTCTTCTTC--T-TCTTTCGCGAGATAACCTAGAAACCCTTTTCCTTTCGTTCGCTTCT 119
Query 121 ACAATCCGCCATGGATCTTGAGGCTGAGATCCGCGCATTACAGCTTGATTCGGCAGATGA 180
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 120 TCAATCCGCCATGGATCTTGAGGCTGAGATCCGCGCATTACAGCTTGAATCGGCAGATGA 179
Query 181 AAACAATGGTGTTGTCATTCCAGAAGATCATAACTCAGATGAAGTTGAGAATTTGGATAA 240
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 180 AAACAATGGTGTTGTCATTCCAGAAGTTCATAACTCACATGAAGTTGAGAATTTGGATAA 239
Query 241 AGCACCAGAAGAAGACTTGAAAGATGAAGTGCAAGAATCAGTCCCAGTTCCTGATGAGCA 300
|||||| | |||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 240 AGCACC-G--GAAGACTTGAAAGATGAAGTGCAAGAATCAATTCCAGTTCCTGATGAGCA 296
Query 301 ACAAGCTTCTGAGGATCATGATGAAGTAATGCTTCATCCAGTCCATAACCCAGCGAAAGC 360
| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 297 AGAAGCTTCTGAGGATCATGATGAAGTAATGCTTCATCCAGTCCATAATCCAGCGAAAGC 356
Query 361 TAAAGAGAAAGCTGCTCAAGACAAGGCTGCCAAAGAGGAAGCTGAAGATGAAGCAGAAGC 420
||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 357 TAAAGAGAAAGCTGCTCAAGAGAAGGCTGCCAAAGAGGAAGCTGAAGATGTTGCAGAAGC 416
Query 421 AAATAAAAAGAGACACTTGAATGTGGTGTTCATTGGGCATGTTGATGCTGGTAAATCCAC 480
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 417 AAATAAAAAGAGACACTTGAATGTTGTGTTCATTGGGCATGTTGATGCTGGTAAGTCCAC 476
Query 481 AATTGGAGGACAGATTCTTTATCTTAGCGGTCAGGTGGATGAACGACAAATCCAAAAGTA 540
|||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||
Sbjct 477 AATTGGAGGACAGATTCTTTTTCTTAGTGGTCAGGTGGATGATCGACAAATCCAAAAGTA 536
Query 541 TGAGAAGGAAGCAAAAGATAAAAGTAGAGAAAGCTGGTATATGGCATATATAATGGATAC 600
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 537 TGAGAAGGAAGCAAAAGACAAAAGTAGAGAAAGCTGGTATATGGCATATATAATGGATAC 596
Query 601 AAATGAAGAAGAGAGGCTCAAGGGTAAAACAGTTGAAGTTGGAAGGGCACACTTTGAAAC 660
|||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||
Sbjct 597 AAATGAAGAAGAGAGGCTTAAGGGCAAAACAGTTGAAGTTGGAAGGGCTCACTTTGAAAC 656
Query 661 TCAGAGCACTAGATTCACCATTTTGGATGCTCCGGGGCACAAGAGTTACGTACCCAATAT 720
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 657 GGAGAGCACTAGATTCACTATTTTAGATGCTCCGGGGCACAAGAGTTACGTACCCAATAT 716
Query 721 GATTAGTGGAGCATCTCAAGCTGACATCGGTGTGCTGGTGATTTCAGCTCGAAAAGGTGA 780
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 717 GATTAGTGGAGCATCTCAAGCGGACATTGGTGTGCTGGTGATTTCAGCTCGAAAAGGTGA 776
Query 781 ATTTGAAACGGGATATGAGAGGGGTGGGCAGACACGTGAACATGTTCAACTTGCCAAAAC 840
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 ATTTGAAACAGGATATGAGAGGGGTGGGCAGACACGTGAACATGTTCAACTTGCCAAAAC 836
Query 841 ATTGGGTGTTTC-AAAGCTGATTGTTGTTGTGAACAAGATGGATGACCCAACTGTGAACT 899
||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 ATTGGGTGTCTCTAAA-CTGATTGTTGTTGTGAACAAGATGGATGACCCAACTGTGAACT 895
Query 900 GGTCGAAAGAAAGGTACGATGAAATTGAACAAAAAATGGTACCGTTTTTGAAGGCCTCTG 959
||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||
Sbjct 896 GGTCGAAAGAAAGGTACGATGAAATAGAACAAAAAATGGTACCGTTCCTGAAAGCCTCTG 955
Query 960 GCTACAACACAAAGAAAGATGTTGTCTTCTTGCCTATATCTGGTCTAATGGGCAAAAATA 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 GCTACAACACAAAGAAAGATGTTGTCTTCTTGCCTATATCTGGTCTAATGGGCAAAAATA 1015
Query 1020 TGGACCAGAGGATGGGTCAA-AATGTTTGTCCTTGGTGGAGTGGCCCTAGCTTTTTTGAA 1078
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1016 TGGACCAGAGGATGGGTCAAGAAA-TTTGTCCTTGGTGGAGTGGCCCTAGCTTTTTTGAA 1074
Query 1079 GTCCTTGATTCTATTGAAATTCCGCCACGGGATCCTAATGGTCCATTCAG 1128
|| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1075 GTACTTGATTCTATTGAAATTCCGCCACGCGATCCTAATGGTCCATTCAG 1124
Score = 1369 bits (741), Expect = 0.0
Identities = 909/983 (92%), Gaps = 39/983 (4%)
Strand=Plus/Plus
Query 1127 AGGATGCCTATTATCGATAAGTTCAAGGACATGGGAACTGTTGTTATGGGAAAAGTAGAA 1186
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1156 AGGATGCCAATTATTGATAAGTTCAAGGACATGGGAACTGTTGTTATGGGAAAAGTAGAA 1215
Query 1187 TCTGGCAGCATTAGGGAGGGTGATTCCTTGGTTGTTATGCCGAACAAGGAACATGTGAAA 1246
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1216 TCTGGCAGCATTCGGGAGGGTGATTCCTTGGTTGTTATGCCGAACAAGGAACAAGTGAAA 1275
Query 1247 GTTGTTGCTATATATTGCGATGAGGATAAAGTTAAGCGTGCAGGACCGGGTGAGAATTTG 1306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1276 GTTGTTGCTATATATTGCGATGAGGATAAAGTTAAGCGTGCAGGACCGGGTGAGAATTTG 1335
Query 1307 AGAGTTCGTATTACTGGCATTGAAGATGAGGACATCCTTGCTGGTTTTGTTTTATCCAGC 1366
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1336 AGAGTTCGTATTACTGGCATTGAAGATGAGGACATCCTTTCTGGTTTTGTTTTATCCAGC 1395
Query 1367 ATTGTTAACCCTGTCCCTGTTGTTACTGAGTTTGTTGCCCAACTACAAATCCTTGAGCTT 1426
||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 1396 ATTGTAAACCCTGTCCCTGCTGTTACCGAGTTTGTTGCCCAACTACAAATCCTTGAGCTG 1455
Query 1427 CTTGACAACGCTATTTTTACAGCTGGTTACAAGGCAATTCTCCACATCCATGCGGTTGTC 1486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1456 CTTGACAACGCTATTTTTACAGCTGGTTACAAGGCAATTCTCCACATCCATGCGGTTGTC 1515
Query 1487 GAGGAGTGTGAGATTATTGAATTGAAAAGCCAAATTGATCTCAAAACAAGGAAACCAATG 1546
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 1516 GAGGAGTGTGAGATTATCGAATTGAAAAGCCAAATTGATCTCAAGACAAGGAAACCAATG 1575
Query 1547 AAAAAGAAAGTTTTGTTTGTGAAGAATGGTGCTGCTGTTGTGTGCCGCATCCAGGTTACG 1606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1576 AAAAAGAAAGTTTTGTTTGTGAAGAATGGTGCTGCTGTTGTGTGCCGCATCCAGGTTACG 1635
Query 1607 AATTCAATTTGTATTGAAAAATTCTCGGATTTCCCTCAACTTGGAAGATTCACTCTACGA 1666
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1636 AATTCAATTTGTATTGAAAAATTCTCAGATTTCCCTCAACTTGGAAGATTCACTCTACGA 1695
Query 1667 ACGGAAGGAAAAACAATTGCGGTTGGAAAGGTTACTGAGCTCTTAAGTGCTGCCTCAAGC 1726
|| ||||||||||||||||| |||||||||||||| |||||||||||| ||| |||||||
Sbjct 1696 ACTGAAGGAAAAACAATTGCTGTTGGAAAGGTTACCGAGCTCTTAAGTTCTGTCTCAAGC 1755
Query 1727 GCTTGATCCAAATTTTGCGAGAGAAAAG--G-AGACGGCTTTCGGGTTGCACCAAGAGGG 1783
||||||||||||||||| |||||||||| | |||||||||||||||||||||| |||||
Sbjct 1756 GCTTGATCCAAATTTTGTGAGAGAAAAGCAGGAGACGGCTTTCGGGTTGCACCAGGAGGG 1815
Query 1784 AGATTATTAGGAAAACGCTTCATGAAGGATGATTCGGACTAAGAAATCTGAGTTCCCTAA 1843
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1816 AGATTA---GGAAAACGCTTCATGAA---TGATTCGGACTAAGAAATCTGAGTTCCCTAA 1869
Query 1844 AACCCAAGTTCTAATACCCt-tttttttCAGTGCACAGTTGAGGTTTGAGATTTACAAGC 1902
||||||||| |||||||| | |||||||||||||||||||||| | |||||||||
Sbjct 1870 AACCCAAGTCCTAATACC-TGTTTTTTTCAGTGCACAGTTGAG-----A--TTTACAAGC 1921
Query 1903 TGCGGAGAGGTGTAACCTGAGACCGGTTTTC----A---------G--AGAGA-A-TTAT 1945
||||||||||||| ||||||||||| ||||| | | ||||| | ||||
Sbjct 1922 TGCGGAGAGGTGTTACCTGAGACCGATTTTCCTTTATATTTCAAAGCTAGAGAGAATTAT 1981
Query 1946 GATGAAATTGAGTGAGAGTTTTCTTTTCTTTCAAGTTAAATTTACAATTAATACGACTAC 2005
|||||| ||||||||||||| |||||||||||| ||||||| ||| |||||||||||||
Sbjct 1982 GATGAACGTGAGTGAGAGTTTACTTTTCTTTCAAATTAAATTAACAGTTAATACGACTAC 2041
Query 2006 CTCCCTTTTGGCTGACTGAATCTGTTTTTCGGCTATTTGGAGATTGCTATTTCATAGTTG 2065
|||||||||||||| | || | ||||||| |||||||||||||||| |||||||||||||
Sbjct 2042 CTCCCTTTTGGCTGGC-GAGTATGTTTTTTGGCTATTTGGAGATTGATATTTCATAGTTG 2100
Query 2066 AGGAACACACATTATTCGTTCCT 2088
| ||| || | | ||||||||||
Sbjct 2101 AAGAA-ACTC-T-ATTCGTTCCT 2120
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105521545590
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5