BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg472042

Length=823
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G18265.1 | Symbols:  | Protein of unknown function, DUF593 |...   612    2e-174


> AT1G18265.1 | Symbols:  | Protein of unknown function, DUF593 
| chr1:6282252-6283293 REVERSE LENGTH=1042
Length=1042

 Score =  612 bits (331),  Expect = 2e-174
 Identities = 405/440 (92%), Gaps = 7/440 (2%)
 Strand=Plus/Plus

Query  388  GCTGTGATCACATCAAGAACAGAGACAGTACTGTGGCATTATCGGAGACAGAGCTCGACG  447
            ||| |||||||||| |||||||||| | ||| ||||| ||||||||||||||||||||||
Sbjct  539  GCT-TGATCACATCCAGAACAGAGAAAATACCGTGGCGTTATCGGAGACAGAGCTCGACG  597

Query  448  AGAAGAATTATTATGGCGAAGAAGAGGAAAGCGAGGACGAAGAAGAATCACGGCCTCGGA  507
            |||||||| || ||||||||||||||||||||||||||||||||||||||| | ||| ||
Sbjct  598  AGAAGAATCATCATGGCGAAGAAGAGGAAAGCGAGGACGAAGAAGAATCACAGTCTCAGA  657

Query  508  GTGATGAAGACCAAGTGTTCGACGTAATTACTCTGAGAAAAATGGTgaagagagagagga  567
             ||||||||||||| |||| ||||| ||||||||||||| |||||||||||||||||| |
Sbjct  658  ATGATGAAGACCAATTGTTAGACGTTATTACTCTGAGAACAATGGTGAAGAGAGAGAGAA  717

Query  568  aacgtggagattgtatgaagaaagagctggagaaggagagaagagCAGCTGAATCAGCTG  627
            ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  718  AACGTGGAGATTACATGAAGAAAGAGCTGGAGAAGGAGAGAAGAGCAGCTGAATCAGCTG  777

Query  628  CTGAAGAAGCCATGGCTATGCTTCTGAAGCTACGGATGGAGAAAAGCGTTGTGGAGATGG  687
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  778  CTGAAGAAGCCATGGCTATGCTTCTGAAGCTACGGATGGAGAAAAGCGTTGTGGAGATGG  837

Query  688  AGGCAAAGCAATACAAGAGAGTTGCGGAACAGAAGCAAGTGTATGATCAACAAGTGATTC  747
            || |||| |||||||||||||| || ||||||||||||||||| |||||| |||||||||
Sbjct  838  AGACAAAACAATACAAGAGAGTCGCCGAACAGAAGCAAGTGTACGATCAAGAAGTGATTC  897

Query  748  AATCATTACAGTGGATGTTAATGAAGCCTGATGA---CGAAGACAAGATTCAAGAC-TAA  803
            ||||||||||||||||||| ||||||| ||||||   |||||||||||||||| |  |||
Sbjct  898  AATCATTACAGTGGATGTTGATGAAGCTTGATGATGACGAAGACAAGATTCAA-ATGTAA  956

Query  804  AACTCTTTGATCCTCTGTTT  823
            | || |||||||||||||||
Sbjct  957  A-CTGTTTGATCCTCTGTTT  975


 Score =  387 bits (209),  Expect = 1e-106
 Identities = 245/262 (94%), Gaps = 3/262 (1%)
 Strand=Plus/Plus

Query  35   ttcttttttcATGGAGATTGCTTCATTTCTGAAGCTTTTGAGTGAAACTGATGGTTTTGG  94
            ||| ||| | ||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct  126  TTC-TTTGTAATGGAGATTACTTCATTTCTGAAGCTTTTGAGTCAAACTGATGGTTTTGG  184

Query  95   ATTTGGGATTTTCGTCT-TTGGTTGCTCCTCTCAGTTTTTCAATCTCGTCTTTCTCTGTT  153
            ||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct  185  ATTTGGGATCTTCGT-TATTGGTTGCTCCTCTCAGTTTTTCAATCTCGTCTTTCTCTGTT  243

Query  154  GTTTGCTTCTTTTGGGACTAAAGTTTCTATTTTTCAAAGGCACTTCATTGTTTTTGCAGT  213
            |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct  244  GTTTGCTTCTTTTGGGACTAAAGTTTCTATCTTTCAAAGGTACTTCATTGTTTTTGCAGT  303

Query  214  ATTTAGAGAAGATCTATCGAATTTCTTCGAAGATTGAGTGTTTCAATGCCTTCGATCGAG  273
            |||||||||||||| ||||||||||| |||| ||||||| ||||||| ||||| ||||||
Sbjct  304  ATTTAGAGAAGATCAATCGAATTTCTCCGAACATTGAGTTTTTCAATTCCTTCAATCGAG  363

Query  274  AACATAAGGATTGCAACAACAA  295
            |||| |||||||||||||||||
Sbjct  364  AACACAAGGATTGCAACAACAA  385


 Score =  172 bits (93),  Expect = 4e-42
 Identities = 101/105 (96%), Gaps = 0/105 (0%)
 Strand=Plus/Plus

Query  287  CAACAACAATGGGTTCATTTCAAAATCTAATTTGGTTGATGGATTGGATCAGAAGAAACC  346
            |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct  401  CAACAACAATGGGTTCATTTCAAAATCTCATTTGGCTGATGGATTGGATCAGAAGAAACC  460

Query  347  CATCATTTTACACTGGAGTTCTGATTCTACTAATGGATTGAGCTG  391
             ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  461  AATCATTTTACACTGGAGTTCTGATTCTACTAATAGATTGAGCTG  505



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 40086849306


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5