BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472046
Length=958
Score E
Sequences producing significant alignments: (Bits) Value
AT1G18290.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1223 0.0
> AT1G18290.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: N-terminal protein myristoylation;
LOCATED IN: chloroplast; EXPRESSED IN: root; Has
94 Blast hits to 94 proteins in 12 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 94; Viruses - 0;
Other Eukaryotes - 0 (source: NCBI BLink). | chr1:6297364-6298328
FORWARD LENGTH=965
Length=965
Score = 1223 bits (662), Expect = 0.0
Identities = 870/966 (90%), Gaps = 32/966 (3%)
Strand=Plus/Plus
Query 4 tctctctctgtgtttctc-tt-tcgttctctcgttcttctACTCGGATCACAATAATGGG 61
||||||| | | |||||| || || |||||| |||| ||||||| |||||||||||||||
Sbjct 18 TCTCTCTTTCTATTTCTCTTTCTCTTTCTCTTGTTCGTCTACTCTGATCACAATAATGGG 77
Query 62 AAACACATCTTCATGCGCACCGTTGATCATATCAACAAACTCATCCTCAGGAGTAGTCAA 121
||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||
Sbjct 78 AAACACATCTTCATGCGCACCATTGATCATATCAACAAACTCATCCTCAGGAGTGGTTAA 137
Query 122 AATCTTGGCTCCATTCACCGGAACTCTCGAAGTTTTCCCAAAACCCATCAAAACCTCCGA 181
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 138 AATCTTGGCTCCATTCACCGGAACTCTTGAAGTTTTCTCAAAACCCATCAAAACCTCCGA 197
Query 182 CATCGTCTCTCGACGCTCCGGCCACTTTATCACCGACTCAACATTACTCCAAATCGGCCA 241
|||||||||| ||| ||||||||||||||| ||||||||||| |||||||||||| ||||
Sbjct 198 CATCGTCTCTAGACACTCCGGCCACTTTATTACCGACTCAACTTTACTCCAAATCAGCCA 257
Query 242 ACGAGTCACCGCCGTGTCTCCCCACGAGTTTTTAAGGCCGAGACGACATCTCTACCTCCT 301
||||||||||||||||||||| |||| | |||| |||||||||||||||||||||||||
Sbjct 258 CCGAGTCACCGCCGTGTCTCCCGACGAATATTTACGGCCGAGACGACATCTCTACCTCCT 317
Query 302 CCTCCCGACCGACATGCTCTTCTCTGTCTTAACACATGAAGAACTCGCTCTCATCTCCGA 361
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
Sbjct 318 CCTCCCGACCGACATGCTCTTCTCTGTCTTAACACAAGAAGAACTTTCTCTCATCTCCAA 377
Query 362 CAAAGCCGCGGAGACACTCAACGAAAGCCGGTATAGCCATTTGAAGAGAATATTCCCTGT 421
|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||
Sbjct 378 CAAAGCCGCGGAGACACTCAACAAAAGCCGGTATAACCATTTGAAGAGAATATTCCCGGT 437
Query 422 TTGCATATTTCCGGCGACGGGAGACAAAAGAAGAAACTCATCATCAGCTAATGATGATGA 481
|||||||||||| ||| ||||||| |||||||||| ||||||||| |||||| | ||
Sbjct 438 CTGCATATTTCCGATGACCGGAGACAGAAGAAGAAACCCATCATCAGTTAATGA--A-GA 494
Query 482 TAATCATGATCACGATGGTGTGGAAATAAGAGAAACCCTAGATGAGAAGGTACTCTACGA 541
| | | ||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 495 TCG--A-GCTCATGATGGTGTGGAAATAAGAGAAACCCTAGATGAGAAGGTACTATACGA 551
Query 542 ATCAAAACATGGATCTTGGAGGCCTAAGTTGGAGACGATCGTGGAGAGCTAAATGCCTAA 601
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 552 ATCAAAACATGGATCTTGGAGGCCTAAATTGGAGACGATCGTGGAGAGCTAAATGCCTAA 611
Query 602 AGTCTCGAGGATCATTATAATACTATATATGTaaaaaaaTCAATTTTCAATCGTAGATTA 661
| ||||||||||||||| |||||||||||| |||| |||||||||||||| |||||| |
Sbjct 612 AATCTCGAGGATCATTAAAATACTATATATATAAACAAATCAATTTTCAAACGTAGACGA 671
Query 662 GTattttgtttttttatttattcttgattttttGTCCGAGTTTTAAAGAGAAATTGAGTC 721
|||||||||| |||||||| ||| ||||||||||||||| ||| |||||||||||||| |
Sbjct 672 GTATTTTGTTCTTTTATTT-TTCCTGATTTTTTGTCCGACTTT-AAAGAGAAATTGAGGC 729
Query 722 TTAATTATATGGTT--GTTCACGATTTGAA-ATTTCGTGTAGATACGGTGATTCAAAT-A 777
||| | || |||| ||||| |||||||| ||| |||||||||| | || | | |
Sbjct 730 TTA-T-AT--GGTTTTGTTCATGATTTGAATATT-CGTGTAGATAA--T--TT-AG-TGA 778
Query 778 TTCAATTGTGTAATTA--GGTCTGATT-AATTTATAATGGACATGAATTGGATAAAAAGG 834
|||||||||||||||| ||| | ||| |||||||| |||||| ||||||||||||||||
Sbjct 779 TTCAATTGTGTAATTATAGGTTT-ATTTAATTTATACTGGACAAGAATTGGATAAAAAGG 837
Query 835 ATGTTGGTCAACGAATCAAAGAATTGGGTTTTT-GGTAATCCAGATTTCAGGTACAACTA 893
|| |||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||
Sbjct 838 ATATTGGTCAACGAATCAAAGAATTGGGTTTTTTGGTAATCCAGATTTTAGGTACAGCTA 897
Query 894 TTTTGGTATTTGGTACGtatatatatatagtatgcatatatTTTCAACTTTGGT-TCGTA 952
|||||||||||||||||||| |||||||||||| |||||||||||||||||||| | |||
Sbjct 898 TTTTGGTATTTGGTACGTATTTATATATAGTATACATATATTTTCAACTTTGGTAT-GTA 956
Query 953 TACTTT 958
||||||
Sbjct 957 TACTTT 962
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46868459151
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5