BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472048
Length=770
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10110.1 | Symbols: MEE67 | Mitochondrial import inner membr... 1066 0.0
AT1G18320.1 | Symbols: | Mitochondrial import inner membrane t... 987 0.0
> AT3G10110.1 | Symbols: MEE67 | Mitochondrial import inner membrane
translocase subunit Tim17/Tim22/Tim23 family protein |
chr3:3116110-3117671 FORWARD LENGTH=930
Length=930
Score = 1066 bits (577), Expect = 0.0
Identities = 716/779 (92%), Gaps = 26/779 (3%)
Strand=Plus/Plus
Query 1 TTTTAAGCTTTTGATGACACTT-TCCCTTGTCGGATTCTACTCTCTATAGTCTATACCTT 59
||||||||||||||||||| || ||||||||||||| |||||||| | || |||||
Sbjct 60 TTTTAAGCTTTTGATGACA-TTGTCCCTTGTCGGATCCTACTCTC-----T-TA-ACCTT 111
Query 60 TGAAATGGCAGATTCGA---ATACTG-A--GACAACCGGTGCTTCTTCGGGCTCCGTGGG 113
||||||||| ||||||| | ||| | ||||||||||||||||| | ||||||
Sbjct 112 TGAAATGGCTGATTCGAGTGCTGCTGAACCAACAACCGGTGCTTCTTCTCCCCCCGTGGC 171
Query 114 TGCTGATGAGAACGCTACCCAGATTCAACCGATCCGGATGCCAACCATCGAGGAGATCCG 173
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 172 TTCTGATGAGAACTCTACCCAGATTCAACCGATCCGGATGCCAACCATCGAGGAGATCCG 231
Query 174 AGCTCAAGAGGTTTGGAACAACTGCGCCGTTCGCGCTGTAACTAGTGGAGTCATGGGAGG 233
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 232 AGCTCAAGAGGTTTGGAACAACTGCGCCGTTCGCGCTGTTACTAGTGGAGTCATGGGAGG 291
Query 234 AGGCCTCGGGTTGATGATGGGTTTGTTCTTGGGGGCACTAGATAATCCTATTATGCATGA 293
||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 292 AGGACTCGGGTTGATGATGGGTTTGTTCTTGGGGGCATTAGATAATCCTATTACGCATGA 351
Query 294 TACGATGACGGCTAGGCAGCAGTTTGTGTTCACAGCAAAACAAATGGGCCAAAGGAGTTG 353
||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 352 TACTATGACGGCTAGGCAGCAGTTTGTGTTCACGGCAAAACAAATGGGGCAAAGGAGTTG 411
Query 354 GAATTCCTGTAAGACATTTGCCGTTATGGGTTTGGTTTTCTCTGCAGCAGAATGCATTGT 413
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 412 GAATTCCTGTAAGACATTTGCAGTTATGGGTTTGGTTTTCTCTGCTGCAGAATGCATTGT 471
Query 414 CGAGAAGGCAAGAGCTAAGCATGACAC-GACAAACACCGCTATAGCTGGATGTGTGACCG 472
||| ||||||||||||||||||||||| | |||||||||||||||||||||||| ||||
Sbjct 472 CGAAAAGGCAAGAGCTAAGCATGACACTGT-AAACACCGCTATAGCTGGATGTGTTACCG 530
Query 473 GTGGTTCAATGTCCGCGCGAGGTGGGCCAAAAGCTGCGTGTATAGGTTGCGCTGGCTTTG 532
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 531 GTGGTTCAATGTCCGCCCGAGGTGGGCCAAAAGCTGCGTGTATAGGTTGCGCTGGATTTG 590
Query 533 CAACTTTCTCTGTACTCATAGAGAAGTTCTTTGATAGGCATACATAAATCACTGAGATAT 592
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 591 CAACTTTCTCTGTACTCATAGAGAAGTTCTTTGATAGGCATACATAAACCAGTGAGATAT 650
Query 593 TTAACAGACGCCAATGCTGAGAtttttttGCTGCTTCTTTTCTGTGATAGTGATACAATT 652
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 651 CTAACAGACGCCATTGCTGAGATTTTTTTGCTGCTTCTTTTCTGTGATAGTGATACAGTT 710
Query 653 CATCACCTGAGCACAGGCAGATAGAAACTAGAATTACACTTTTAAATATAGAATAAGCAA 712
|||||||||| | |||| |||||||| |||||||||||||||| ||||||||||||||||
Sbjct 711 CATCACCTGAACCCAGGGAGATAGAAGCTAGAATTACACTTTTCAATATAGAATAAGCAA 770
Query 713 GGCTTGTGTTGATTG-ATTGAATATTCTACAGTTATTGTTGTTATTTATCATAGATTTC 770
||||||||||||||| || | || | | || |||||||||||||||||||||||||
Sbjct 771 GGCTTGTGTTGATTGCAT--A-TACT-T-CA---ATTGTTGTTATTTATCATAGATTTC 821
> AT1G18320.1 | Symbols: | Mitochondrial import inner membrane
translocase subunit Tim17/Tim22/Tim23 family protein | chr1:6304360-6305689
FORWARD LENGTH=699
Length=699
Score = 987 bits (534), Expect = 0.0
Identities = 633/680 (93%), Gaps = 9/680 (1%)
Strand=Plus/Plus
Query 55 ACCTTTGAAATGGCAGATTCGA---ATACTG--A-GACAACCGGTGCTTCTTCGGGCTCC 108
|||||||||||||| ||||||| | ||| | ||||||||||||||||| | ||
Sbjct 12 ACCTTTGAAATGGCTGATTCGAGTGCTGCTGAAACAACAACCGGTGCTTCTTCTCCCCCC 71
Query 109 GTGGGTGCTGATGAGAACGCTACCCAGATTCAACCGATCCGGATGCCAACCATCGAGGAG 168
| || | ||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 72 GCGGCTTCTGATGAGAACTCTA-CCAGATTCAACCGATCCGGATGCCAACCATCGAGGAG 130
Query 169 ATCCGAGCTCAAGAGGTTTGGAACAACTGCGCCGTTCGCGCTGTAACTAGTGGAGTCATG 228
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 131 ATCCGAGCTCAAGAGGTTTGGAACAACTGCGCCGTTCGTGCTGTAACTAGTGGAGTCATG 190
Query 229 GGAGGAGGCCTCGGGTTGATGATGGGTTTGTTCTTGGGGGCACTAGATAATCCTATTATG 288
|||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||| |
Sbjct 191 GGAGGAGGACTCGGGTTGATGATGGGTTTGTTCCTGGGGGCATTAGATAATCCTATTACG 250
Query 289 CATGATACGATGACGGCTAGGCAGCAGTTTGTGTTCACAGCAAAACAAATGGGCCAAAGG 348
|||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 251 CATGATACTATGACGGCTAGGCAGCAGTTTGTGTTCACGGCAAAACAAATGGGGCAAAGG 310
Query 349 AGTTGGAATTCCTGTAAGACATTTGCCGTTATGGGTTTGGTTTTCTCTGCAGCAGAATGC 408
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 311 AGTTGGAATTCCTGTAAGACATTTGCAGTTATGGGTTTGGTTTTCTCTGCTGCAGAATGC 370
Query 409 ATTGTCGAGAAGGCAAGAGCTAAGCATGACAC-GACAAACACCGCTATAGCTGGATGTGT 467
|||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 371 ATTGTCGAAAAGGCAAGAGCTAAGCATGACACTGT-AAACACCGCTATAGCTGGATGTGT 429
Query 468 GACCGGTGGTTCAATGTCCGCGCGAGGTGGGCCAAAAGCTGCGTGTATAGGTTGCGCTGG 527
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 430 TACCGGTGGTTCAATGTCCGCCCGAGGTGGGCCAAAAGCTGCGTGTATAGGTTGCGCTGG 489
Query 528 CTTTGCAACTTTCTCTGTACTCATAGAGAAGTTCTTTGATAGGCATACATAAATCACTGA 587
||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 490 ATTTGCAATTTTCTCTGTACTCATAGAGAAGTTCTTTGATAGGCATACATAAACCAGTGA 549
Query 588 GATATTTAACAGACGCCAATGCTGAGAtttttttGCTGCTTCTTTTCTGTGATAGTGATA 647
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 550 GATATCTAACAGACGCCATTGCTGAGATTTTTTTGCTGCTTCTTTTCTGTGATAGTGATA 609
Query 648 CAATTCATCACCTGAGCACAGGCAGATAGAAACTAGAATTACACTTTTAAATATAGAATA 707
|| |||||||||||| | |||| |||||||| |||||||||||||||| |||||||||||
Sbjct 610 CAGTTCATCACCTGAACCCAGGGAGATAGAAGCTAGAATTACACTTTTCAATATAGAATA 669
Query 708 AGCAAGGCTTGTGTTGATTG 727
||||||||||||||||||||
Sbjct 670 AGCAAGGCTTGTGTTGATTG 689
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37424439515
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5