BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472054
Length=1169
Score E
Sequences producing significant alignments: (Bits) Value
AT1G18340.1 | Symbols: | basal transcription factor complex su... 1821 0.0
> AT1G18340.1 | Symbols: | basal transcription factor complex
subunit-related | chr1:6311483-6313931 REVERSE LENGTH=1232
Length=1232
Score = 1821 bits (986), Expect = 0.0
Identities = 1110/1170 (95%), Gaps = 8/1170 (1%)
Strand=Plus/Plus
Query 1 GTTCGTAATCGGAAAACTCAAAGACTTGTTGTGAAGATATATATGAAGAAG-AACAAAAG 59
||||||||||||||||||||||||| |||||||||||||||| || ||||| || ||||
Sbjct 41 GTTCGTAATCGGAAAACTCAAAGACCTGTTGTGAAGATATAT-TGGAGAAGAAAAAAAAA 99
Query 60 ACGATTTCCCGGCACTGAAATAGCATTATCGGATCTCGTTCTCACCGGGAAGATTTCCCG 119
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 100 ACGATTTCCCGGCACTGAAATAGCATTATCAGATCTCGTTCCCACCGGGAAGATTTCCCG 159
Query 120 GCACACTGAAATTCTGAGTTGGATTCTTCTGTGAAAACTATGCCTTCCGTTGTTTCTAAG 179
||||||||||||||||| ||||| || |||||| ||||||||||| || ||| |||||||
Sbjct 160 GCACACTGAAATTCTGACTTGGAATCGTCTGTG-AAACTATGCCTGCCATTGCTTCTAAG 218
Query 180 CAGTATTCAGACGATGTTAGTCTTCTAGTTTTGTTGCTTGATACGAATCCTCTTTTCTGG 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 219 CAGTATTCAGACGATGTTAGTCTTCTAGTTTTGTTGCTTGATACGAATCCTCTTTTCTGG 278
Query 240 AGCACTACATCGATTACCTTCTCTCAATTCCTTTCTCATGTGCTTGCGTTTCTGAATGCA 299
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 279 AGCACTACATCGATTACCTTCTCTCAGTTCCTTTCTCATGTGCTTGCGTTTCTTAATGCG 338
Query 300 GTTTTGGGCTTAAATCAGTTGAACCAAGTTGTAGTTATAGCTACTGGATACAGTTCCTGT 359
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 339 GTTTTGGGGTTAAATCAGTTGAACCAAGTTGTAGTTATAGCTACTGGATACAGTTCTTGT 398
Query 360 GATTACATTTATGATTCTTCTTTGACATCCAATCATGGAAATCTCGAGAGCAACGGAACT 419
||||||||||||||||| ||||||||||| |||||||||||| |||||||||| ||||||
Sbjct 399 GATTACATTTATGATTCGTCTTTGACATCAAATCATGGAAATTTCGAGAGCAATGGAACT 458
Query 420 GGAATGCCTGCACTTTTTGGTTCTTTGCTGAAGAAATTGGAAGATTTTGTTACAAAAGAT 479
|||||||||||| |||||||||||||||| |||||||||||||| |||||||| ||||||
Sbjct 459 GGAATGCCTGCAATTTTTGGTTCTTTGCTTAAGAAATTGGAAGAGTTTGTTACCAAAGAT 518
Query 480 GAGGAGCTCAGCAGGGAGGAAGTGTCTGAGGATAGAATACCTTCTTGTCTCTTGTCAGGA 539
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 GAGGAGCTCAGCAAGGAGGAAGTGTCTGAGGATAGAATACCTTCTTGTCTCTTGTCAGGA 578
Query 540 TCACTCTCCATGGCTCTTTGCTATATACAGAGGGTTTTCCGTTCTGGACATCTTCATCCC 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 579 TCACTCTCCATGGCTCTTTGCTATATACAGAGGGTTTTCCGTTCTGGACATCTTCATCCC 638
Query 600 CAGCCTCGGATTTTATGCTTGCAAGGTTCCCCAGATGGTCCGGAACAATATGTAGCTGTT 659
|||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||
Sbjct 639 CAGCCTCGGATTTTATGCTTGCAAGGTTCCCCAGATGGCCCGGAACAGTATGTTGCTGTT 698
Query 660 ATGAACTCTATCTTCTCTGCCCAACGCTTAATGGTTCCCATTGATTCATGTTACATAGGT 719
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 699 ATGAACTCTATCTTCTCTGCCCAACGCTTGATGGTTCCCATTGATTCGTGTTACATAGGT 758
Query 720 GTACAGAACTCAGCATTTTTGCAGCAGGCATCTTATATAACTGGTGGTGTACATCATACA 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 759 GTACAGAACTCAGCATTTTTGCAGCAGGCATCTTATATAACTGGTGGTGTACATCATACA 818
Query 780 CCTAAACAGTTGGATGGGCTGTTTCAGTATCTAACGACGATTTTTGCAACTGACTTGCAT 839
|||||||||||||||||||| ||||| ||||||||||| || |||||||| || |||||
Sbjct 819 CCTAAACAGTTGGATGGGCTATTTCAATATCTAACGACAATCTTTGCAACCGATTTGCAC 878
Query 840 TCCCGCAGTTTTGTACAACTTCCTAAACCCATTGGTGTTGATTTTCGCGCATCGTGCTTT 899
|||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 879 TCCCGCGGTTTTGTACAACTTCCTAAACCCATAGGTGTAGATTTTCGCGCATCGTGCTTT 938
Query 900 TGCCACAAGAAGACAATAGATATGGGCTACATATGTTCAGTGTGTCTGTCCATTTTCTGT 959
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 939 TGCCACAAGAAGACAATAGATATGGGCTACATATGCTCAGTGTGTCTGTCCATTTTCTGT 998
Query 960 GAGCATCACAAGAAATGTTCAACGTGCGGGTCTGTTTTTGGTCAGTCTAAACTTGATGAT 1019
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 999 GAGCATCACAAGAAATGTTCAACCTGCGGGTCTGTATTTGGTCAGTCTAAACTTGATGAT 1058
Query 1020 GCTTCATCTGTCTCTGATAAGAAGAGAAAAGCTCCTAGTACCTAAAATCATCTTTTGTGC 1079
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1059 GCTTCATCTGCCTCTGATAAGAAGAGAAAAGCTCCTAGTACCTAAAATCATCTTTTGTGC 1118
Query 1080 CAGAGAGAAACTTCAAACTTTGTTCAATATTTTTCTATGCGTTCATTTACGATAATGTAT 1139
|||||||||||| ||||||||||| ||| | | ||| ||||||||||| ||||||| | |
Sbjct 1119 CAGAGAGAAACTGCAAACTTTGTTTAAT-TGTGTCTTTGCGTTCATTTTCGATAATTT-T 1176
Query 1140 GTATGAACCATATATCAAAGTGAAATCAAT 1169
||| | |||||||||||||||||||||||
Sbjct 1177 -TAT-A-CCATATATCAAAGTGAAATCAAT 1203
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57379222935
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5