BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg472054 Length=1169 Score E Sequences producing significant alignments: (Bits) Value AT1G18340.1 | Symbols: | basal transcription factor complex su... 1821 0.0 > AT1G18340.1 | Symbols: | basal transcription factor complex subunit-related | chr1:6311483-6313931 REVERSE LENGTH=1232 Length=1232 Score = 1821 bits (986), Expect = 0.0 Identities = 1110/1170 (95%), Gaps = 8/1170 (1%) Strand=Plus/Plus Query 1 GTTCGTAATCGGAAAACTCAAAGACTTGTTGTGAAGATATATATGAAGAAG-AACAAAAG 59 ||||||||||||||||||||||||| |||||||||||||||| || ||||| || |||| Sbjct 41 GTTCGTAATCGGAAAACTCAAAGACCTGTTGTGAAGATATAT-TGGAGAAGAAAAAAAAA 99 Query 60 ACGATTTCCCGGCACTGAAATAGCATTATCGGATCTCGTTCTCACCGGGAAGATTTCCCG 119 |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| Sbjct 100 ACGATTTCCCGGCACTGAAATAGCATTATCAGATCTCGTTCCCACCGGGAAGATTTCCCG 159 Query 120 GCACACTGAAATTCTGAGTTGGATTCTTCTGTGAAAACTATGCCTTCCGTTGTTTCTAAG 179 ||||||||||||||||| ||||| || |||||| ||||||||||| || ||| ||||||| Sbjct 160 GCACACTGAAATTCTGACTTGGAATCGTCTGTG-AAACTATGCCTGCCATTGCTTCTAAG 218 Query 180 CAGTATTCAGACGATGTTAGTCTTCTAGTTTTGTTGCTTGATACGAATCCTCTTTTCTGG 239 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 219 CAGTATTCAGACGATGTTAGTCTTCTAGTTTTGTTGCTTGATACGAATCCTCTTTTCTGG 278 Query 240 AGCACTACATCGATTACCTTCTCTCAATTCCTTTCTCATGTGCTTGCGTTTCTGAATGCA 299 |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| Sbjct 279 AGCACTACATCGATTACCTTCTCTCAGTTCCTTTCTCATGTGCTTGCGTTTCTTAATGCG 338 Query 300 GTTTTGGGCTTAAATCAGTTGAACCAAGTTGTAGTTATAGCTACTGGATACAGTTCCTGT 359 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 339 GTTTTGGGGTTAAATCAGTTGAACCAAGTTGTAGTTATAGCTACTGGATACAGTTCTTGT 398 Query 360 GATTACATTTATGATTCTTCTTTGACATCCAATCATGGAAATCTCGAGAGCAACGGAACT 419 ||||||||||||||||| ||||||||||| |||||||||||| |||||||||| |||||| Sbjct 399 GATTACATTTATGATTCGTCTTTGACATCAAATCATGGAAATTTCGAGAGCAATGGAACT 458 Query 420 GGAATGCCTGCACTTTTTGGTTCTTTGCTGAAGAAATTGGAAGATTTTGTTACAAAAGAT 479 |||||||||||| |||||||||||||||| |||||||||||||| |||||||| |||||| Sbjct 459 GGAATGCCTGCAATTTTTGGTTCTTTGCTTAAGAAATTGGAAGAGTTTGTTACCAAAGAT 518 Query 480 GAGGAGCTCAGCAGGGAGGAAGTGTCTGAGGATAGAATACCTTCTTGTCTCTTGTCAGGA 539 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 519 GAGGAGCTCAGCAAGGAGGAAGTGTCTGAGGATAGAATACCTTCTTGTCTCTTGTCAGGA 578 Query 540 TCACTCTCCATGGCTCTTTGCTATATACAGAGGGTTTTCCGTTCTGGACATCTTCATCCC 599 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 579 TCACTCTCCATGGCTCTTTGCTATATACAGAGGGTTTTCCGTTCTGGACATCTTCATCCC 638 Query 600 CAGCCTCGGATTTTATGCTTGCAAGGTTCCCCAGATGGTCCGGAACAATATGTAGCTGTT 659 |||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||| Sbjct 639 CAGCCTCGGATTTTATGCTTGCAAGGTTCCCCAGATGGCCCGGAACAGTATGTTGCTGTT 698 Query 660 ATGAACTCTATCTTCTCTGCCCAACGCTTAATGGTTCCCATTGATTCATGTTACATAGGT 719 ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct 699 ATGAACTCTATCTTCTCTGCCCAACGCTTGATGGTTCCCATTGATTCGTGTTACATAGGT 758 Query 720 GTACAGAACTCAGCATTTTTGCAGCAGGCATCTTATATAACTGGTGGTGTACATCATACA 779 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 759 GTACAGAACTCAGCATTTTTGCAGCAGGCATCTTATATAACTGGTGGTGTACATCATACA 818 Query 780 CCTAAACAGTTGGATGGGCTGTTTCAGTATCTAACGACGATTTTTGCAACTGACTTGCAT 839 |||||||||||||||||||| ||||| ||||||||||| || |||||||| || ||||| Sbjct 819 CCTAAACAGTTGGATGGGCTATTTCAATATCTAACGACAATCTTTGCAACCGATTTGCAC 878 Query 840 TCCCGCAGTTTTGTACAACTTCCTAAACCCATTGGTGTTGATTTTCGCGCATCGTGCTTT 899 |||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 879 TCCCGCGGTTTTGTACAACTTCCTAAACCCATAGGTGTAGATTTTCGCGCATCGTGCTTT 938 Query 900 TGCCACAAGAAGACAATAGATATGGGCTACATATGTTCAGTGTGTCTGTCCATTTTCTGT 959 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 939 TGCCACAAGAAGACAATAGATATGGGCTACATATGCTCAGTGTGTCTGTCCATTTTCTGT 998 Query 960 GAGCATCACAAGAAATGTTCAACGTGCGGGTCTGTTTTTGGTCAGTCTAAACTTGATGAT 1019 ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 999 GAGCATCACAAGAAATGTTCAACCTGCGGGTCTGTATTTGGTCAGTCTAAACTTGATGAT 1058 Query 1020 GCTTCATCTGTCTCTGATAAGAAGAGAAAAGCTCCTAGTACCTAAAATCATCTTTTGTGC 1079 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1059 GCTTCATCTGCCTCTGATAAGAAGAGAAAAGCTCCTAGTACCTAAAATCATCTTTTGTGC 1118 Query 1080 CAGAGAGAAACTTCAAACTTTGTTCAATATTTTTCTATGCGTTCATTTACGATAATGTAT 1139 |||||||||||| ||||||||||| ||| | | ||| ||||||||||| ||||||| | | Sbjct 1119 CAGAGAGAAACTGCAAACTTTGTTTAAT-TGTGTCTTTGCGTTCATTTTCGATAATTT-T 1176 Query 1140 GTATGAACCATATATCAAAGTGAAATCAAT 1169 ||| | ||||||||||||||||||||||| Sbjct 1177 -TAT-A-CCATATATCAAAGTGAAATCAAT 1203 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57379222935 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5