BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472055
Length=833
Score E
Sequences producing significant alignments: (Bits) Value
AT1G18350.1 | Symbols: ATMKK7, BUD1, MKK7 | MAP kinase kinase 7... 562 2e-159
AT1G73500.1 | Symbols: ATMKK9, MKK9 | MAP kinase kinase 9 | chr... 278 8e-74
> AT1G18350.1 | Symbols: ATMKK7, BUD1, MKK7 | MAP kinase kinase
7 | chr1:6315651-6316738 FORWARD LENGTH=1088
Length=1088
Score = 562 bits (304), Expect = 2e-159
Identities = 424/479 (89%), Gaps = 20/479 (4%)
Strand=Plus/Plus
Query 1 ATGGCTCTTGTTCGTGAACGCCGTCGAATCAACCTCCGTCTCCCTCTTCCACCACTCTAC 60
||||||||||||||| ||||||||| ||||||||||||||||||| | ||||| |||| |
Sbjct 36 ATGGCTCTTGTTCGTAAACGCCGTCAAATCAACCTCCGTCTCCCTGTCCCACCGCTCT-C 94
Query 61 -GATCGCCTCCCCTGTTTCTCCTTTGCCTCCTCAACCGCCGCCGTCACATCCAAATTGGA 119
| || ||||||||| |||||||||| ||||| || ||| | | | ||
Sbjct 95 TGTTCACCTCCCCTGGTTCTCCTTTG---CCTCATCCACCG-C--C-C--CC-------- 137
Query 120 TGTCATCAACAATGGAATCTCCGCTTCCGATATCGAGAAACTCCACGTTCTCGGAAGCGG 179
||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||| ||
Sbjct 138 -GTCATCAACAACGGAATCTCAGCTTCCGATGTCGAGAAACTCCACGTTCTCGGAAGAGG 196
Query 180 AACCGGCGGGATCGTATACAAAGTCCACCACAAAACCACGGGGGAGCTATACGCTCTGAA 239
|| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 197 AAGCAGCGGGATCGTATACAAAGTCCACCACAAAACCACGGGGGAGATATACGCTCTGAA 256
Query 240 AACAGTCAACGGAGACATGAGTCCTACTTTCACAAGACAATTAACACGCGAGATGGAGAT 299
| |||||||||| |||||||||||| ||||||||||||||||| | ||||||||||||||
Sbjct 257 ATCAGTCAACGGCGACATGAGTCCTGCTTTCACAAGACAATTAGCGCGCGAGATGGAGAT 316
Query 300 CCTCCGTCGCACGGAATCTCCTTATATCGTCCGGTGTCACGGGATCTTCGAGAAACCAAT 359
||||||||||||||| ||||||||| ||||| ||||||| ||||||||||||||||||||
Sbjct 317 CCTCCGTCGCACGGATTCTCCTTATGTCGTCAGGTGTCAAGGGATCTTCGAGAAACCAAT 376
Query 360 CGCCGGCGAGGTTTCAATCCTCATGGAGTATATGGACGGCGGAAACCTAGAATCTCTCCG 419
|| ||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 377 CGTCGGAGAGGTTTCGATCCTCATGGAGTATATGGACGGTGGAAACCTAGAATCTCTCCG 436
Query 420 CGGCGCCGTAACAGAGAAACAACTCGCTGGATTTTCCCGCCAGATTTTGAAAGGATTAA 478
||||||||| || ||||||||||| || |||||||||||||||||||||||||| ||||
Sbjct 437 CGGCGCCGTTACGGAGAAACAACTAGCGGGATTTTCCCGCCAGATTTTGAAAGGTTTAA 495
Score = 486 bits (263), Expect = 1e-136
Identities = 333/364 (91%), Gaps = 16/364 (4%)
Strand=Plus/Plus
Query 479 CCCGGAGAGATTTGACTCCGTCCGTCGCCGGAGAAAACTCCGATGTATACGCAGGCGATA 538
||||||||||||||||| | | | ||||||||||||||||||||| |||||||||||||
Sbjct 659 CCCGGAGAGATTTGACT-C-T--GCCGCCGGAGAAAACTCCGATGTTTACGCAGGCGATA 714
Query 539 TCTGGAGTTTCGGATTGATGATGCTCGAGCTCTTCGTCGGACATTTTCCGTTGCTTCCTC 598
|||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 715 TCTGGAGTTTCGGAGTGATGATACTTGAGCTCTTCGTCGGACATTTTCCGTTGCTTCCTC 774
Query 599 AGGGACAGAGACCTGATTGGGCGACGCTAATGTGCGCCGTGTG-TTTCGGAGAGCCACCG 657
|||||||||||||||| ||||||||| ||||||||| |||||| ||| ||||| ||||||
Sbjct 775 AGGGACAGAGACCTGACTGGGCGACGTTAATGTGCGTCGTGTGCTTT-GGAGAACCACCG 833
Query 658 CGTACGCCGGAAGGATGTTCCGACGAGTTTAGGAGTTTTGTTGATTGTTGTCTCCGTAAA 717
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 834 CGTGCGCCGGAAGGATGTTCCGACGAGTTTAGGAGTTTTGTTGACTGTTGTCTCCGTAAA 893
Query 718 GAATCGAGTGAGAGGTGGACGGCGTCGCAGCTTCTCGGTCACTCTTTTCTCCGTGAA-GT 776
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 894 GAATCGAGTGAGAGGTGGACGGCGTCGCAGCTTCTCGGTCACCCTTTTCTCCGTGAAAGT 953
Query 777 -T------CCGATTGCTTGTGATGTTACGGGTCTGGATCTTTTTTCCGGGTGACCCAAAT 829
| |||| |||||||||| |||||||||||||| |||| |||||||||||||||
Sbjct 954 CTTTAGATCCGACTGCTTGTGATATTACGGGTCTGGATATTTT--CCGGGTGACCCAAAT 1011
Query 830 CGCA 833
||||
Sbjct 1012 CGCA 1015
> AT1G73500.1 | Symbols: ATMKK9, MKK9 | MAP kinase kinase 9 | chr1:27639091-27640529
REVERSE LENGTH=1439
Length=1439
Score = 278 bits (150), Expect = 8e-74
Identities = 233/273 (85%), Gaps = 6/273 (2%)
Strand=Plus/Plus
Query 506 CCGGAGAAAACTCCGATGTATACGCAGGCGATATCTGGAGTTTCGGATTGATGATGCTCG 565
|||| | || ||| ||| | ||||| || ||||||||||||||||||||||||||||| |
Sbjct 834 CCGGTGGAAGCTCTGATATCTACGCCGGAGATATCTGGAGTTTCGGATTGATGATGCTTG 893
Query 566 AGCT-CTTCGTCGGACATTTTCCGTTGCTTCCTCAGGGACAGAGACCTGATTGGGCGACG 624
|||| || ||| || |||||||| |||||||| | |||||||||||||||||||||||||
Sbjct 894 AGCTTCT-CGTTGGTCATTTTCCTTTGCTTCCGCCGGGACAGAGACCTGATTGGGCGACG 952
Query 625 CTAATGTGCGCCGTGTGTTTCGGAGAGCCACCGCGTA-CGCCGGAAGGATGTTCCGACGA 683
| |||||||| |||||||| ||||| || ||||| | ||||||| |||||||| || ||
Sbjct 953 TTGATGTGCGCGGTGTGTTTTGGAGAACCGCCGCG-AGCGCCGGAGGGATGTTCTGAAGA 1011
Query 684 GTTTAGGAGTTTTGTTGATTGTTGTCTCCGTAAAGAATCGAGTGAGAGGTGGACGGCGTC 743
||||||||| || ||||| ||||||||||||||||| |||||| || | ||||||||| |
Sbjct 1012 GTTTAGGAGCTTCGTTGAGTGTTGTCTCCGTAAAGATTCGAGTAAGCGATGGACGGCGCC 1071
Query 744 GCAGCTTCTCGGTCACTC-TTTTCTCCGTGAAG 775
||||||||| | ||| || ||||||||| ||||
Sbjct 1072 GCAGCTTCTTGCTCA-TCCTTTTCTCCGGGAAG 1103
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40589190776
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5