BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg472062 Length=921 Score E Sequences producing significant alignments: (Bits) Value AT1G18440.1 | Symbols: | Peptidyl-tRNA hydrolase family protei... 1347 0.0 > AT1G18440.1 | Symbols: | Peptidyl-tRNA hydrolase family protein | chr1:6345974-6347910 FORWARD LENGTH=1111 Length=1111 Score = 1347 bits (729), Expect = 0.0 Identities = 858/916 (94%), Gaps = 25/916 (3%) Strand=Plus/Plus Query 1 CTAATTCCCCAGAAGAAAAGATGAAATCTGTAGCTTTTCCCGCTAAAATCGCAAATCTCA 60 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | Sbjct 1 CTAATTCCCCAGAAGAAAAGATGAAAGCTGTAGCTTTTCCCGCTAAAATCGCAAATCTTA 60 Query 61 GCTTCCCTTCTGGCTGTAGCT--C-A--C-T--G-t-----------ttttt-tCGCCGG 99 ||||||||||| |||| ||| | | | | | | ||||| ||||||| Sbjct 61 GCTTCCCTTCTAACTGTTGCTCACTATTCTTCCGATCACCGGCGACGTTTTTATCGCCGG 120 Query 100 CATTGCCTTGTCGGAAGCTGACAAAAGGAACAAGAGGTGTCGGAA-GCTTGATGTCTCAG 158 |||||||||||||||||||||| ||||||| ||||||| || ||| |||||||||||||| Sbjct 121 CATTGCCTTGTCGGAAGCTGACGAAAGGAATAAGAGGTCTC-GAAGGCTTGATGTCTCAG 179 Query 159 TGTTTGTCATCATCGTCACAATCATTGTCATATTT-ATCGAATTCATTCTCCTCTCAACC 217 ||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||| Sbjct 180 TGTTTATCATCATCGTCACAATCATTGTCAT-TTTCATCGAATTCATTCTCCTCTCAACC 238 Query 218 GGAATCAGAGTTACTTCAAGCTTTACCCTCTTCGAAGCCAAAATCTCCGCCACCGCAGCT 277 ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| Sbjct 239 GGAATCAGAGTTACTTCAAGCTTTACCTTCTTCGAAGCCAAAATCTCCGCCACTGCAGCT 298 Query 278 GCCATGGCTCATTGTTGGTTTGGGTAATCCCGGAAAGAAGTACCAGGGCACGCGCCACAA 337 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 299 GCCATGGCTCATTGTTGGTTTGGGTAATCCCGGCAAGAAGTACCAGGGCACGCGCCACAA 358 Query 338 CGTTGGTTTTGAGATGGTGGACGCTTTGGCTAATGCAGAAGGCATCTCCATGAACACTGT 397 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 359 CGTTGGTTTTGAGATGGTGGACGCTTTGGCTGATGCAGAAGGCATCTCCATGAACACTGT 418 Query 398 TAACTTCAAGGCCTTGTTTGGAAAAGGCGTTATTGGAAATGTACCGATTATGCTGGCTAA 457 ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| Sbjct 419 TAACTTCAAGGCCTTGTTTGGGAAAGGCGTTATTGGAAATATACCGATTATGCTGGCTAA 478 Query 458 ACCACAAACTTTCATGAACCTAAGTGGTGAGTCTGTTGGACAAATTGTTTCATTTTACAA 517 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 479 ACCACAAACTTTCATGAACCTAAGTGGTGAGTCTGTTGGACAAATCGTTTCATTTTACAA 538 Query 518 GATCCCGCTAAAGCAAGTACTTGTGGTTTACGATGATTTAGATTTGCCCTTTGGTAAACT 577 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 539 GATCCCGTTAAAGCAAGTACTTGTGGTTTACGATGATTTAGATTTGCCCTTTGGTAAACT 598 Query 578 GCGTTTATTGCCAAAAGGTGGTCACGGAGGCCACAATGGGATGAGAAGCATTATAGATCG 637 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct 599 ACGTTTATTGCCAAAAGGTGGTCACGGAGGCCACAATGGGATGAGAAGTATTATAGACCG 658 Query 638 CCTCAAAGGTAGCCGTGATTTTCCTCGTCTAAGAATAGGGATCGGTCGGCCTCCAGGGAA 697 ||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||| Sbjct 659 CCTCAAAGGTAGCCGTGATTTTCCTCGACTAAGAATAGGGATCGGACGTCCTCCAGGGAA 718 Query 698 GATGGATACAGCCAATTTTGTTCTCCGCCAGTTCAATAGACAAGAACAGGAAGAGTTGGA 757 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 719 GATGGATACAGCCAATTTTGTTCTCCGCCAGTTCAATAGACAGGAACAGGAAGAGTTGGA 778 Query 758 TTATACATTCCAAACCGGGATAGAAGCCATAAGGATTCTTTTGCTTGAGGGGATCAACAA 817 | | ||||||||||||||| |||| || |||||||||||||||||||||||| ||||||| Sbjct 779 TCACACATTCCAAACCGGGTTAGAGGCAATAAGGATTCTTTTGCTTGAGGGGTTCAACAA 838 Query 818 AAGTGCAACCTTTGTCAACACTCGAAAATCTATGGAGCAACTCAGTTAGAAGAGACATTG 877 ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 839 AAGTGCAACATTTGTCAACACTCGAAAATCTATGGAGCAACTCAGTTAGAAGTGACATTG 898 Query 878 TTACATCACATATATT 893 |||||| ||||||||| Sbjct 899 TTACATTACATATATT 914 Score = 56.5 bits (30), Expect = 4e-07 Identities = 33/34 (97%), Gaps = 1/34 (3%) Strand=Plus/Plus Query 889 ATA-TTGAATCCTTTTTGAGCAAATTGTACATCA 921 ||| |||||||||||||||||||||||||||||| Sbjct 972 ATACTTGAATCCTTTTTGAGCAAATTGTACATCA 1005 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45009795712 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5