BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472062
Length=921
Score E
Sequences producing significant alignments: (Bits) Value
AT1G18440.1 | Symbols: | Peptidyl-tRNA hydrolase family protei... 1347 0.0
> AT1G18440.1 | Symbols: | Peptidyl-tRNA hydrolase family protein
| chr1:6345974-6347910 FORWARD LENGTH=1111
Length=1111
Score = 1347 bits (729), Expect = 0.0
Identities = 858/916 (94%), Gaps = 25/916 (3%)
Strand=Plus/Plus
Query 1 CTAATTCCCCAGAAGAAAAGATGAAATCTGTAGCTTTTCCCGCTAAAATCGCAAATCTCA 60
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 1 CTAATTCCCCAGAAGAAAAGATGAAAGCTGTAGCTTTTCCCGCTAAAATCGCAAATCTTA 60
Query 61 GCTTCCCTTCTGGCTGTAGCT--C-A--C-T--G-t-----------ttttt-tCGCCGG 99
||||||||||| |||| ||| | | | | | | ||||| |||||||
Sbjct 61 GCTTCCCTTCTAACTGTTGCTCACTATTCTTCCGATCACCGGCGACGTTTTTATCGCCGG 120
Query 100 CATTGCCTTGTCGGAAGCTGACAAAAGGAACAAGAGGTGTCGGAA-GCTTGATGTCTCAG 158
|||||||||||||||||||||| ||||||| ||||||| || ||| ||||||||||||||
Sbjct 121 CATTGCCTTGTCGGAAGCTGACGAAAGGAATAAGAGGTCTC-GAAGGCTTGATGTCTCAG 179
Query 159 TGTTTGTCATCATCGTCACAATCATTGTCATATTT-ATCGAATTCATTCTCCTCTCAACC 217
||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 180 TGTTTATCATCATCGTCACAATCATTGTCAT-TTTCATCGAATTCATTCTCCTCTCAACC 238
Query 218 GGAATCAGAGTTACTTCAAGCTTTACCCTCTTCGAAGCCAAAATCTCCGCCACCGCAGCT 277
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 239 GGAATCAGAGTTACTTCAAGCTTTACCTTCTTCGAAGCCAAAATCTCCGCCACTGCAGCT 298
Query 278 GCCATGGCTCATTGTTGGTTTGGGTAATCCCGGAAAGAAGTACCAGGGCACGCGCCACAA 337
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 299 GCCATGGCTCATTGTTGGTTTGGGTAATCCCGGCAAGAAGTACCAGGGCACGCGCCACAA 358
Query 338 CGTTGGTTTTGAGATGGTGGACGCTTTGGCTAATGCAGAAGGCATCTCCATGAACACTGT 397
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 359 CGTTGGTTTTGAGATGGTGGACGCTTTGGCTGATGCAGAAGGCATCTCCATGAACACTGT 418
Query 398 TAACTTCAAGGCCTTGTTTGGAAAAGGCGTTATTGGAAATGTACCGATTATGCTGGCTAA 457
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 419 TAACTTCAAGGCCTTGTTTGGGAAAGGCGTTATTGGAAATATACCGATTATGCTGGCTAA 478
Query 458 ACCACAAACTTTCATGAACCTAAGTGGTGAGTCTGTTGGACAAATTGTTTCATTTTACAA 517
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 479 ACCACAAACTTTCATGAACCTAAGTGGTGAGTCTGTTGGACAAATCGTTTCATTTTACAA 538
Query 518 GATCCCGCTAAAGCAAGTACTTGTGGTTTACGATGATTTAGATTTGCCCTTTGGTAAACT 577
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 GATCCCGTTAAAGCAAGTACTTGTGGTTTACGATGATTTAGATTTGCCCTTTGGTAAACT 598
Query 578 GCGTTTATTGCCAAAAGGTGGTCACGGAGGCCACAATGGGATGAGAAGCATTATAGATCG 637
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 599 ACGTTTATTGCCAAAAGGTGGTCACGGAGGCCACAATGGGATGAGAAGTATTATAGACCG 658
Query 638 CCTCAAAGGTAGCCGTGATTTTCCTCGTCTAAGAATAGGGATCGGTCGGCCTCCAGGGAA 697
||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||
Sbjct 659 CCTCAAAGGTAGCCGTGATTTTCCTCGACTAAGAATAGGGATCGGACGTCCTCCAGGGAA 718
Query 698 GATGGATACAGCCAATTTTGTTCTCCGCCAGTTCAATAGACAAGAACAGGAAGAGTTGGA 757
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 719 GATGGATACAGCCAATTTTGTTCTCCGCCAGTTCAATAGACAGGAACAGGAAGAGTTGGA 778
Query 758 TTATACATTCCAAACCGGGATAGAAGCCATAAGGATTCTTTTGCTTGAGGGGATCAACAA 817
| | ||||||||||||||| |||| || |||||||||||||||||||||||| |||||||
Sbjct 779 TCACACATTCCAAACCGGGTTAGAGGCAATAAGGATTCTTTTGCTTGAGGGGTTCAACAA 838
Query 818 AAGTGCAACCTTTGTCAACACTCGAAAATCTATGGAGCAACTCAGTTAGAAGAGACATTG 877
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 839 AAGTGCAACATTTGTCAACACTCGAAAATCTATGGAGCAACTCAGTTAGAAGTGACATTG 898
Query 878 TTACATCACATATATT 893
|||||| |||||||||
Sbjct 899 TTACATTACATATATT 914
Score = 56.5 bits (30), Expect = 4e-07
Identities = 33/34 (97%), Gaps = 1/34 (3%)
Strand=Plus/Plus
Query 889 ATA-TTGAATCCTTTTTGAGCAAATTGTACATCA 921
||| ||||||||||||||||||||||||||||||
Sbjct 972 ATACTTGAATCCTTTTTGAGCAAATTGTACATCA 1005
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45009795712
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5