BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472063
Length=1469
Score E
Sequences producing significant alignments: (Bits) Value
AT1G18450.1 | Symbols: ATARP4, ARP4 | actin-related protein 4 |... 2416 0.0
> AT1G18450.1 | Symbols: ATARP4, ARP4 | actin-related protein 4
| chr1:6348107-6351975 FORWARD LENGTH=1627
Length=1627
Score = 2416 bits (1308), Expect = 0.0
Identities = 1385/1423 (97%), Gaps = 1/1423 (0%)
Strand=Plus/Plus
Query 1 CCGAGATTACAGAGAACCCCGTCCCGTGTTTAAACCCTCCGACGAC-AAGCTCAGATAGA 59
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 1 CCGAGATTACAGAGAACCCCGTCCCGTGTTTAAACCCTCCGGCGACAAAGCTCAGATAGA 60
Query 60 GAACCTCTCCACGCTTTTCGTTCGCTGCAGCCATGTACGGCGGAGATGAAGTGTCAGCTA 119
||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAACCGCTCCACCCTTGTCGTTCGCTGCAGCCATGTACGGCGGAGATGAAGTGTCAGCTA 120
Query 120 TTGTGGTTGACTTGGGTTCGCACACTTGCAAGGCTGGTTACGCCGGAGAAGATGCTCCCA 179
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 121 TTGTGGTTGACTTGGGTTCGCACACTTGCAAGGCTGGTTACGCCGGTGAAGATGCTCCCA 180
Query 180 AGGCCGTTTTCCCTTCCGTTGTTGGGGCAGTAGATGGTATAGAGGCAATGGATGTGGATG 239
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 181 AGGCCGTTTTCCCTTCCGTTATTGGGGCAGTAGATGGTGTAGAGGCAATGGATGTGGATG 240
Query 240 CTGTTTCTACAAAGACTAATTCGAATTCTGAGGATTCGAAGACTGAGTCTGAAAAAGAAA 299
|| ||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||
Sbjct 241 TTGATTCTACAAAGACTAATTCGAACTCTGAGGATTCGAAGACCGAGTCTGAAAAGGAAA 300
Query 300 AGGGCAAACGCAAGCTCTATGTAGGATCTCAAGCCATGAGTTACCGCCGAGATCATATGG 359
|| ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 301 AGAGCAAACGCAAGCTCTATGTAGGATCTCAAGCCATGAGCTACCGCAGAGATCATATGG 360
Query 360 AGGTTTTGTCACCTATAAAAGACGGCATAGTTTCTGACTGGGATTTGGTGGACAATATAT 419
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 361 AGGTTTTGTCACCTATAAAAGATGGCATCGTTTCTGACTGGGATTTGGTGGACAATATAT 420
Query 420 GGGAACATGCTTTCAAGAGTTGTCTGATGATTGATCCTACGGAGCATCCAATGCTGCTAG 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GGGAACATGCTTTCAAGAGTTGTCTGATGATTGATCCTACGGAGCATCCAATGCTGCTAG 480
Query 480 CTGAGCCTCCTTTAAACACTCAACAGCAGAGAGAGAAGGCGGCAGAGCTAATGTTTGAAA 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CTGAGCCTCCTTTAAACACTCAACAGCAGAGAGAGAAGGCGGCAGAGCTAATGTTTGAAA 540
Query 540 AATACAAAGTTCCTGCATTGTTTATGGCTAAGAATCCTGTTCTCACGTCTTTTGCTACTG 599
| ||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 541 AGTACAAAGTTCCGGCACTGTTTATGGCTAAGAACCCTGTTCTCACGTCTTTTGCTACTG 600
Query 600 GGCGCGCTACTTCTTTGGTTGTTGACTGCGGTGGAGGATCCACAACTATTTCACCTGTGC 659
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 601 GGCGTGCTACTTCTTTGGTTGTTGACTGCGGTGGAGGATCCACAACCATTTCACCGGTGC 660
Query 660 ATGATGGTTATGTTCTTCAAAAGGCTGTTGTATCATCTCCACTTGGAGGGGAATTTCTCA 719
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 661 ATGATGGTTATGTTCTTCAGAAGGCTGTTGTATCGTCTCCACTTGGAGGGGAATTTCTCA 720
Query 720 CTGACTGCCTACTGAAAAGCTTGGAGAGTAAAGGAATTAAAATAAGACCTAGATACTCTT 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CTGACTGCCTACTGAAAAGCTTGGAGAGTAAAGGAATTAAAATAAGACCTAGATACTCTT 780
Query 780 TCAAGAGAAAGGAAATACGAGCAGGGGAATTCCAGGTTGAAGATGTGGATATTCCGGACA 839
||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 781 TCAAGAGGAAGGAAGTACGAGCAGGGGAATTCCAGGTTGAAGATGTGGATATTCCTGACA 840
Query 840 CCACGGAAAGCTACAAACTCTTCTGCCAGAGGATGATAGTGGGTGATATCAAGGATTCTA 899
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 841 CCACGGAAAGCTACAAACTCTTCTGCCAGAGGATGATAGTGGGTGATATCAAGGATTCCA 900
Query 900 TTTGTCGAGTTCCTGATACTCCCTATGATGATAAATCATATTCAAACATCCCAACTACGT 959
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 901 TTTGTCGAGTTCCTGATACTCCCTATGACGATAAATCATATTCAAACATCCCTACTACGT 960
Query 960 CGTACGAGCTTCCTGATGGCCAGACGCTCGAGATTGGTGCTGATAGGTTCAAAGTTCCTG 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 CGTACGAGCTTCCTGATGGCCAGACGCTCGAGATTGGTGCTGATAGGTTCAAAGTTCCTG 1020
Query 1020 ATGTGATGTTCAACCCATCCATAGTCCAGACGATTCCTGGAATGGAGAAGTATGCTGATA 1079
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1021 ATGTGATGTTCAACCCGTCCATAGTCCAGACGATTCCTGGAATGGAGAAGTATGCTGAGA 1080
Query 1080 TGATTCCTTCCGTTCGTGGGTTACCACACATGGTCATGGAGAGCATCAACAAATGTGATG 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 TGATTCCTTCCGTTCGTGGGTTACCACACATGGTCATGGAGAGCATCAACAAATGTGATG 1140
Query 1140 TAGACATCCGGAGAGAGTTGTATAGTAGCATACTGCTTGCTGGTGGCACATCGTCAATGC 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 TAGACATCCGGAGAGAGTTGTATAGTAGCATACTGCTTGCTGGTGGCACATCGTCAATGC 1200
Query 1200 AACAATTGAAAGAACGTCTCGAAAAGGACTTGATCGAAGAGTCTCCTCACTCGGCTAGAG 1259
|||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1201 AACAGCTGAAAGAACGTCTCGAAAAGGACTTGATCGAAGAGTCTCCTCACTCAGCTAGAG 1260
Query 1260 TTAAAGTGTTGGCAAGCGGTAACACAACAGAAAGAAGATTCAGTGTATGGATAGGAGGGA 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 TTAAAGTGTTGGCAAGCGGTAACACAACAGAAAGAAGATTCAGTGTATGGATAGGAGGGA 1320
Query 1320 GTATATTGGCATCACTAGGCTCATTTCAACAGATGTGGTTCTCCAAGTCTGAGTATGAGG 1379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 GTATATTGGCATCACTAGGCTCATTTCAACAGATGTGGTTCTCCAAGTCTGAGTATGAGG 1380
Query 1380 AACATGGAGCTTCCTACATTCAGAGAAAATGCCCTTAAAGCAG 1422
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 AACATGGAGCTTCCTACATTCAGAGAAAATGCCCTTAAAGCAG 1423
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72439386435
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5