BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472066
Length=1792
Score E
Sequences producing significant alignments: (Bits) Value
AT1G18470.1 | Symbols: | Transmembrane Fragile-X-F-associated ... 2787 0.0
AT1G73950.1 | Symbols: | Transmembrane Fragile-X-F-associated ... 1376 0.0
> AT1G18470.1 | Symbols: | Transmembrane Fragile-X-F-associated
protein | chr1:6356131-6360192 REVERSE LENGTH=1815
Length=1815
Score = 2787 bits (1509), Expect = 0.0
Identities = 1708/1801 (95%), Gaps = 26/1801 (1%)
Strand=Plus/Plus
Query 1 GGAAGGAGAAGAAGCAGGGGTCCATCATCATCAAAAACAACATTGCAGCAATTGCGTTTT 60
||||||||||||||||||||| | |||||||||| ||||||||| ||||||||||||||
Sbjct 1 GGAAGGAGAAGAAGCAGGGGT-C--CATCATCAAATACAACATTGTAGCAATTGCGTTTT 57
Query 61 CGACTTT-CAGAGATATTTTCCCATAGAGATGGTTTCGAAGCTAACAAGTTGACAAA-TT 118
||||||| ||||||||||| |||||||||||| |||||||||||||||||||||| ||
Sbjct 58 CGACTTTATAGAGATATTTT--CATAGAGATGGTCTCGAAGCTAACAAGTTGACAAATTT 115
Query 119 CTTCGTTAAGAGATAAGAGAGAAAGATGAGTTGGAGGAGAGTGCTTAAGTCGATACAAGC 178
||||||| |||||||||| |||||||||| ||||||||||| ||||||||||||||
Sbjct 116 CTTCGTT-----ATAAGAGAGATAGATGAGTTGCAGGAGAGTGCTGAAGTCGATACAAGC 170
Query 179 CTTGGCGGCTCATAGCTTACTCTTCTGTTTCACGCTCTTATTGGTGCTTAAGCTTGATCA 238
||||||||||||||| |||||||||||||||||||| |||||||||||||| || |||||
Sbjct 171 CTTGGCGGCTCATAGTTTACTCTTCTGTTTCACGCTTTTATTGGTGCTTAAACTCGATCA 230
Query 239 CACCGTCTCTTCCTCATGGTGGATGGTGTTTTTCCCGCTGTGGGCTTTTCATGCAGTTGT 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 231 CACCGTCTCTTCCTCATGGTGGATGGTGTTTTTCCCGCTGTGGGCTTTTCATGCAGTTGT 290
Query 299 TGCAAGGGGCAGATTCTCTCTTCCTGCTCCTGTTGCTCCACGTAACCGTCATTGGGCTCC 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 TGCAAGGGGCAGATTCTCTCTTCCTGCTCCTGTTGCTCCACGTAACCGTCATTGGGCTCC 350
Query 359 TTGCCATGCTGTTGTCGCGACACCGTTGCTAGTAGCATTCGAATTACTCCTCTGTATATA 418
||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||
Sbjct 351 TTGCCATGCTGTTGTCGCGACACCGTTACTTGTAGCATTTGAATTACTCCTCTGTATATA 410
Query 419 CCTCGAGAGTTCTTATGCTCGTTGGCCACCAGCTGTGAGTCTGAAGATTGCATTTGT-AC 477
|||||||||||||||||||||||||||||||||||| ||| |||||||||| ||| | ||
Sbjct 411 CCTCGAGAGTTCTTATGCTCGTTGGCCACCAGCTGTCAGTTTGAAGATTGC-TTTCTTAC 469
Query 478 CGTTATTGGCATTTGAATTAACGATACTGGTGGACAATTTGAGAATGTGTCGAGCATTGA 537
| || ||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 470 CATTGTTGGCTTTTGAATTAACAATACTGGTAGACAATTTGAGAATGTGTCGAGCATTGA 529
Query 538 TGCCAGGCGACGACGACAGCATAACTGATGATGCAATATGGGAGGCACTTCCTCATTTCT 597
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 530 TGCCAGGAGACGACGACAGCATAACTGATGATGCAATATGGGAGGCACTTCCTCATTTCT 589
Query 598 GGGTTGCAATTTCCATGGTGTTCACGTTGGCTGCTACGTTTTTTACCCTCCTAAAACTTT 657
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 590 GGGTTGCAATTTCCATGGTGTTCACGTTGGCTGCTACGTTCTTTACCCTCCTAAAGCTTT 649
Query 658 CTGGCGATGTAGTTGCTCTTGGATGGTGGGATTTATTCATAAATTTTGGAATTGCCGAGT 717
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 650 CTGGCGACGTAGTTGCTCTTGGATGGTGGGATCTATTCATAAATTTTGGAATTGCCGAGT 709
Query 718 GCTTTGCTTTTCTTGTTTGCACAAAATGGTCCAACCCAGTAATCCATAGAAGCTCACGTG 777
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 710 GCTTTGCTTTTCTTGTTTGCACAAAATGGTCCAATCCAGTAATCCATAGAAGCTCACGTG 769
Query 778 CCCGAGAAACCGGGTCATCTTCTACCACTATCAGATATCTTGACTGGAACAGTGGCCTTG 837
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 770 CCCGAGAAACCGGGTCATCTTCTACCAGTATCAGATATCTTGACTGGAACAGCGGCCTTG 829
Query 838 TGGTTGCTCCAGAAGAGGATAGGCACCAAGATAGATGGTGCGGTTTGCAAGATATTGGTG 897
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 830 TGGTTGCTCCAGAAGAGGATAGACACCAAGATAGATGGTGCGGTTTGCAAGATATTGGTG 889
Query 898 GTCATATGTTAAAAATTCCCGTTATTGTATTTCAAGTTGTTCTTTGCATGTATCTAGAGG 957
|||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||
Sbjct 890 GTCATATGTTAAAAATTCCCGTTATTTTATTTCAAGTTGTCCTTTGCATGTATTTAGAGG 949
Query 958 GGACTCCTGAAAGAGCTAAGGATATATCCATTCCATTACTCTTCTCTCCACTATTCCTAT 1017
|||||||||||||||||||||||||||| || ||| |||| || ||||||||||||||||
Sbjct 950 GGACTCCTGAAAGAGCTAAGGATATATCGATCCCAGTACTGTTTTCTCCACTATTCCTAT 1009
Query 1018 TGCAAGGCCTCGGTGTTCTCTTTGCTGCTTCTAAACTCATAGAGAAGATCGTTCTCTTAC 1077
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 1010 TGCAAGGCCTCGGTGTTCTCTTTGCTGCTTCTAAACTCCTAGAGAAGATCGTCCTCTTAC 1069
Query 1078 TGCGCGGGGAAGCTGGTCCAGGATTGTATTTTAGATTTTCATCAAGTGCCCATGATTGCT 1137
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1070 TCCGCGGGGAAGCTGGTCCGGGATTGTATTTTAGATTTTCATCAAGTGCCCATGATTGCT 1129
Query 1138 TGGGATTTTTGCACCATGGTTCCAGGCTATTAGGTTGGTGGTCGATTGACGAAGGAAGCC 1197
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1130 TGGGATTCTTGCACCATGGTTCCAGGCTATTAGGTTGGTGGTCAATTGACGAAGGAAGCC 1189
Query 1198 GGGAGGAACAAGCTCGACTGTACTTTGATCAAGAATCTGGTTACAATACATTCAGTGGTC 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1190 GGGAGGAACAAGCTCGACTGTACTTTGATCAAGAATCTGGTTACAATACATTCAGTGGTC 1249
Query 1258 ATCCGCCTGAGGTAGTCAAGAAAATGCCAAAGGAAGATCTTGCTGAAGAGGTATGGAGAC 1317
||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1250 ATCCGCCTGAGATAGTCAAGAAAATGCCAAAGGAAGATCTTGCAGAAGAGGTGTGGAGAC 1309
Query 1318 TTCAAGCAGCACTTGGTGAACAAACAGAAATCACGAAATTCAGCCAACAAGAATATGAAA 1377
|||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||
Sbjct 1310 TTCAAGCAGCACTTGGTGAACAAACAGAAATCACAAAATTCAGCCAGCAGGAATATGAAA 1369
Query 1378 GACTGCAAAATGAGAAAGTGCTGTGTAGGGTTTGCTTTGAAAAAGAAATCAGTTTGGTAC 1437
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1370 GACTGCAAAATGAGAAAGTGCTGTGTAGGGTTTGCTTTGAAAAAGATATCAGTTTGGTAC 1429
Query 1438 TGCTTCCATGTAGACACCGTGTTCTCTGCAGAGTCTGTGCAGACAAGTGTACAACGTGCC 1497
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |
Sbjct 1430 TGCTTCCATGTAGACACCGTGTTCTCTGCAGAACCTGTGCAGACAAGTGTACAACATGTC 1489
Query 1498 CAATATGTCGTATAGACATTGAAAAACGACTATCTGTATACGACGTTTGACTGTGTTAAC 1557
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1490 CAATATGTCGTATAGACATTGAAAAACGACTATCTGTATACGACGTATGACTGTGTTAAC 1549
Query 1558 TTTGGCCCATGTTCGAGAGTAGGATTTGAGGTTGATGCTCCAGACAAACATTCCATTTTA 1617
||||||||||| || ||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1550 TTTGGCCCATGATCAAGAGTAGGATTTGTGGTTGATGCTCCAGACAAACATTCCAGTTTA 1609
Query 1618 CCA----TACTGTTTCCCAAACTTCTGATGTTTTTGCTGAATCTTTTTATTTGTCTGAAT 1673
||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1610 CCAACCATACTGTTTCCCAAACTTCTGATGTTTTTGCTGAATCTTTTTGTTTGTCTGAAT 1669
Query 1674 CAGCATCAAGTATAAAAAA--GTATAGGTGTATACATATATGTATATGTATTTTTCTGTA 1731
||||| | ||||||||||| |||||||||||||| | |||| |||||||||||||
Sbjct 1670 CAGCAGCTAGTATAAAAAAAAGTATAGGTGTATACGT----GTAT--GTATTTTTCTGTA 1723
Query 1732 GAAAACCTCATACAAACTTTAGCTGTAACATACAAAGTTTGTATAATATCCATCTCTTTT 1791
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1724 GGAAACCTCATTCAAACTTTAGCTGTAACATACAAAGTTTGTATAATATCCATCTCTTTT 1783
Query 1792 T 1792
|
Sbjct 1784 T 1784
> AT1G73950.1 | Symbols: | Transmembrane Fragile-X-F-associated
protein | chr1:27799830-27804604 REVERSE LENGTH=1825
Length=1825
Score = 1376 bits (745), Expect = 0.0
Identities = 1214/1438 (84%), Gaps = 42/1438 (3%)
Strand=Plus/Plus
Query 127 AGAGATAAGAGAGAAAGATGAGTTGGAGGAGAGTGCTT-AAGT-CGATACAAGCCTTGGC 184
||||| |||| || | ||||| || |||||||| || || | || ||||||||| ||
Sbjct 113 AGAGAGAAGAAAG-ACGATGAACTGTTGGAGAGTG-TTGAAATCCG-TACAAGCCTCGGT 169
Query 185 GGCTCA-TAGCTTACTCTTCTGTTTCACGCTC-TTATTGGTGCTTAAGCTTGATCACACC 242
|||||| | |||| ||||||| |||||||||| | |||||||| ||||| |||||| ||
Sbjct 170 GGCTCACT-GCTTTCTCTTCTCTTTCACGCTCGCT-TTGGTGCTCAAGCTCGATCACTCC 227
Query 243 GTCT-CTTCCTCATGGTGGATGGTGTTTTTCCCGCTGTGGGCTTTTCATGCAGTTGTTGC 301
| | ||| ||| |||||| | |||| | | || ||||||||||| ||||| ||||||||
Sbjct 228 AT-TACTTACTCCTGGTGGGTTGTGTGTCTACCACTGTGGGCTTTCCATGCTGTTGTTGC 286
Query 302 AAGGGGCAGATTCTCTCTTCCTGCTCCTGTTGCTCCACGTAACCGTCATTGGGCTCCTTG 361
|||||| |||||||| ||||||||||| | ||||| |||||||||||||||||||| ||
Sbjct 287 AAGGGGAAGATTCTCGCTTCCTGCTCCAATCGCTCCTCGTAACCGTCATTGGGCTCCATG 346
Query 362 CCATGCTGTTGTCGCGACACCGTTGC-TAGTAGCATTCGAATTACTCCTCTGTATATACC 420
|||||| ||||| | |||||||||| || |||| |||||||||||||||||| ||||||
Sbjct 347 TCATGCTATTGTCTCAACACCGTTGCTTA-TAGCTTTCGAATTACTCCTCTGTGTATACC 405
Query 421 TCGAGAGTTCTTATGCTCG-TTGGCCACCAGCTGTGAGTC-TGAAGATTGCATTTGTACC 478
|||||| | | |||||| | || ||| ||||||||||| | ||||||||| |||| | ||
Sbjct 406 TCGAGACTGCATATGCT-GATTCGCCGCCAGCTGTGAG-CTTGAAGATTGTATTTCTCCC 463
Query 479 GTTATTGGCATTTGAATTAACGATACTGGTGGACAATTTGAGAATGTGTCGAGCATTGAT 538
|||||||| |||||| ||| ||||||||||||||| |||||||||||| ||| ||||
Sbjct 464 TTTATTGGCGTTTGAAGTAATAATACTGGTGGACAATGCGAGAATGTGTCGGGCACTGAT 523
Query 539 GCCAGGCGACGACGACAGCAT-AACTGATGATGCAATATGGGAGGCACTTCCTCATTTCT 597
||| || || || || ||| | || |||||| ||| ||||||| || |||||||||||||
Sbjct 524 GCCTGGAGATGAAGAGAGCGTGAA-TGATGAAGCAGTATGGGAAGCTCTTCCTCATTTCT 582
Query 598 GGGTTGCAATTTCCATGGTGTTCACGT-TGGCTGCTAC-GTTTTTTACCCTCCTAAAACT 655
||||||| || |||||||||||| | | |||||||| | | ||||||||||| || ||
Sbjct 583 GGGTTGCGATCTCCATGGTGTTC-TTTCTCGCTGCTACAG-TCTTTACCCTCCTTAAGCT 640
Query 656 TTCTGGCGATGTAGTTGCTCTTGGATGGTGGGATTTATTCATAAATTTTGGAATTGCCGA 715
||||||||||||| ||||||||| ||||||||||||||||| ||||| ||||| || ||
Sbjct 641 GTCTGGCGATGTAGCTGCTCTTGGCTGGTGGGATTTATTCATTAATTTCGGAATCGCAGA 700
Query 716 GTGCTTTGCTTTTCTTGTTTGCACAAAATGGTCCAACCCAGTAATCCATAGAAGCTCACG 775
||||||||| ||||||||||| ||||||||||| || ||||| || ||||||||||||||
Sbjct 701 GTGCTTTGCGTTTCTTGTTTGTACAAAATGGTCTAATCCAGTGATTCATAGAAGCTCACG 760
Query 776 TGCCCGAGAAACCGGGTCATCTTCTACCACTATCAGATATCTTGACTGGAACAGTGGCCT 835
|| ||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 761 TGATAGAGAAACTGGGTCATCTTCTACCAATATTAGATATCTTGACTGGAACAGTGGCCT 820
Query 836 TGTGGTTGCTCCAGAAGAGGATAGGCACCAAGATAGATGGTGCGGTTTGCAAGATATTGG 895
|| |||| | ||||||| |||||| ||||||||| || || || ||||||| |||||
Sbjct 821 TGGGGTTTTTTCAGAAGACGATAGGAACCAAGATACAT-GT--GGCCTGCAAGACATTGG 877
Query 896 TGGTCATATGTTAAAAATTCCCGTTATTGTATTTCAAGTTGTTCTTTGCATGTATCTAGA 955
||||||||| | ||||| ||| | |||||||||||||| || ||||||||| |||||||
Sbjct 878 TGGTCATATAATGAAAATCCCCCTCATTGTATTTCAAGTGGTACTTTGCATGCATCTAGA 937
Query 956 GGGGACTCCTGAAAG-AGCTAAGGATATATCCAT-TCCAT-TACTCTTCTCTCCACTATT 1012
||||||||||| ||| |||||| ||||| | | ||| | | || || |||||||| ||
Sbjct 938 GGGGACTCCTG-AAGCTGCTAAGTCTATAT-C-TGTCCCTGTCCTGTTTTCTCCACTTTT 994
Query 1013 CCTATTGCAAGGCCTCGGTGTTCTCTTTGCTGCTTCTAAACTCATAGAGAAGATCGTTCT 1072
||| ||||||||| | |||||||| ||||||||||||||||| ||||||||| | |||||
Sbjct 995 CCTTTTGCAAGGCGTTGGTGTTCTATTTGCTGCTTCTAAACTAATAGAGAAGGTTGTTCT 1054
Query 1073 -CTTACTGCGCGGGGAAGCTGGTCCAGGATTGTATTTTAGATTTTC-ATCAAGTGCCCAT 1130
| | ||||| || |||| || | ||||||| ||||||||| |||| ||| || || |||
Sbjct 1055 AC-TGCTGCGTGGCGAAGATGATACAGGATTATATTTTAGA-TTTCTATCCAGAGCACAT 1112
Query 1131 GATTGCTTGGGATTT-TTGCACCATGGTTCCAGGCTATTAGGTTGGTGGTCGATTGACGA 1189
||||||||||| ||| ||||||||||| ||||||||| ||||||||||||| ||||| ||
Sbjct 1113 GATTGCTTGGG-TTTCTTGCACCATGGATCCAGGCTACTAGGTTGGTGGTCAATTGATGA 1171
Query 1190 AGGAAGCCGGGAGGAACAAGCTCGACTGTACTTTGATCAAGAATCTGGTTACAATACATT 1249
||||||||||||||| |||||||||| |||||||||||||||||||| |||||||| ||
Sbjct 1172 AGGAAGCCGGGAGGAGGAAGCTCGACTATACTTTGATCAAGAATCTGGGTACAATACCTT 1231
Query 1250 CAGTGGTCATCCGCCTGAGGTAGTCAAGAAAATGCCAAAGGAAGATCTTGCTGAAGAGGT 1309
| |||||||||||||||| |||||||||||||||| ||| |||| ||||| || |||||
Sbjct 1232 CTGTGGTCATCCGCCTGAAATAGTCAAGAAAATGCCGAAGAAAGAGCTTGCGGAGGAGGT 1291
Query 1310 ATGGAGACTTCAAGCAGCACTTGGTGAACAAACAGAAATCACGAAATTCAGCCAACAAGA 1369
|||||||||||||||||||||||||||||||||||||||||||||||||| || || ||
Sbjct 1292 GTGGAGACTTCAAGCAGCACTTGGTGAACAAACAGAAATCACGAAATTCAGTCAGCAGGA 1351
Query 1370 ATATGAAAGACTGCAAAATGAGAAAGTGCTGTGTAGGGTTTGCTTTGAAAAAGAAATCAG 1429
|||||| |||||||||||||||||||||||||||||||| || ||||||| |||||||||
Sbjct 1352 ATATGAGAGACTGCAAAATGAGAAAGTGCTGTGTAGGGTATGTTTTGAAAGAGAAATCAG 1411
Query 1430 T-TTGGTACTGCTTCCATGTAGACACCGTGTTCTCTGCAGAGTCTGTGCAGACAAGTGTA 1488
| ||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 1412 TGTTG-TACTGCTTCCATGTAGACACCGTGTTCTCTGCAGAAACTGTTCAGACAAGTGTA 1470
Query 1489 CAACGTGCCCAATATGTCGTATAGAC-ATTGAAAAACGACTATCTGTATACGACGTTT 1545
|| ||||| | || |||||| || || ||| | || || | ||||| || ||||
Sbjct 1471 AAAAATGCCCCTTCTGCCGTATA-ACTATCGAAGAGCGGCTCCCCGTATATGATGTTT 1527
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88654162470
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5