BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472069
Length=1441
Score E
Sequences producing significant alignments: (Bits) Value
AT1G18490.1 | Symbols: | Protein of unknown function (DUF1637)... 1653 0.0
AT1G18486.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 207 2e-52
AT4G02655.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 122 7e-27
> AT1G18490.1 | Symbols: | Protein of unknown function (DUF1637)
| chr1:6366520-6368849 FORWARD LENGTH=1654
Length=1654
Score = 1653 bits (895), Expect = 0.0
Identities = 1007/1060 (95%), Gaps = 11/1060 (1%)
Strand=Plus/Plus
Query 386 CCCACTTAACTCATAGGTCAATCAGTCTCGGATAAGAACATTCGAACAATTACCGACACA 445
|||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 510 CCCACTAAACTCATAGGTTAATCACTCTCGGATAAGAACATTCGAACAATTACCGACACA 569
Query 446 CAAAAACTTTGAAGaaaaaaaGAAAAGAATATGTTGTCGAGATTGTTCAAGGCAGGTGAA 505
|||||| |||||||| ||||| ||| || ||||||||||||||||||||||||||||||
Sbjct 570 CAAAAAGTTTGAAGAGAAAAA-CAAA-AA-ATGTTGTCGAGATTGTTCAAGGCAGGTGAA 626
Query 506 AAGGTTTTGTTGAATCTCGTTAGCAAGAAAGACCTTCACATGGCGTCGAGGAATCAGGAG 565
|||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 627 AAGGTTTTGTCGAATCTCGTTAGCAAGAAAGACATTTACATGGCGTCGAGGAATCAGGAG 686
Query 566 AAATCTCCCAAAGTGCAAGAGCTTTACGACCTCTGCAAAGAGACTTTCACTGGCAAAGCT 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 687 AAATCTCCCAAAGTGCAAGAGCTTTACGACCTCTGCAAAGAGACTTTCACTGGCAAAGCT 746
Query 626 CCTTCTCCTGCTTCCATGGCTGTCCAAAAACTATGCTCTGTGTTGGACTCAGTTAGTCCT 685
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 747 CCTTCTCCTGCTTCCATGGCTATCCAAAAGCTATGCTCTGTGTTGGACTCAGTTAGTCCT 806
Query 686 GCAGATGTTGGGCTTCAAGAGGTATCTCAAGACGACGATCGAGGCTACGGAGTTTCTGGG 745
||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 807 GCAGATGTTGGGCTTGAAGAGGTATCTCAAGACGATGATCGAGGCTATGGAGTTTCTGGG 866
Query 746 GTTAGCCGTTTCAACAGAGTAGGACGATGGGCACAACCGATAACATTCTTAGACATTCAT 805
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 867 GTTAGCCGTTTCAATAGAGTAGGACGATGGGCACAACCGATAACATTCTTAGACATTCAT 926
Query 806 GAATGTGATACTTTTACAATGTGTATTTTCTGCTTCCCAACATCTTCAGTGATTCCATTG 865
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 927 GAATGTGATACTTTTACAATGTGTATTTTCTGCTTCCCAACGTCTTCAGTGATCCCATTG 986
Query 866 CATGACCATCCAGAGATGGCTGTGTTTAGCAAAATCCTCTATGGATCACTTCATGTTAAA 925
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 987 CATGATCATCCAGAGATGGCTGTGTTTAGTAAAATCCTCTATGGATCACTTCATGTTAAA 1046
Query 926 GCTTACGATTGGGTTGAACCTCCATGTATTATCACACAAGATAAAGGCGTGCCCGGTTCT 985
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1047 GCTTACGATTGGGTCGAACCTCCATGTATTATCACACAAGATAAAGGCGTCCCCGGTTCT 1106
Query 986 CTTCCAGCAAGGTTGGCCAAATTGGTGAGTGACAAAGTTATTACGCCTCAGTCTGAGATA 1045
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1107 CTTCCAGCAAGGTTGGCGAAATTGGTGAGTGACAAAGTTATAACGCCTCAGTCTGAGATA 1166
Query 1046 CCGGTGTTGTACCCAAAGACTGGAGGCAATCTCCATTGCTTCACTGCACTGACTCCATGT 1105
|||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1167 CCGGCGTTGTACCCAAAGACTGGAGGCAATCTCCATTGCTTCACTGCGTTGACTCCATGT 1226
Query 1106 GCGGTGCTCGACATCCTCACACCTCCTTACAAAGAAAGTGTTGGCAGGAGTTGCAGTTAT 1165
|| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1227 GCTGTGCTCGACATTCTCTCACCTCCTTACAAAGAAAGTGTTGGCAGGAGTTGCAGTTAC 1286
Query 1166 TACATGGACTATCCGTTTTCCACTTTCGCATTGGAGGAA-GGAATGAAGAAGGTGGA--A 1222
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
Sbjct 1287 TACATGGACTATCCGTTTTCCACTTTCGCATTGGAG-AACGGAATGAAGAAGGTGGATGA 1345
Query 1223 -GGAAAGGAAGACGAATACGCTTGGCTTGTACAGATTGACACACCCGATGATCTTCACAT 1281
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1346 AGGAAAGGAAGACGAATACGCATGGCTTGTACAGATTGACACGCCCGATGATCTTCACAT 1405
Query 1282 GCGTCCCGGATCATATACTGGTCCAACTATCAGGGTCTAGATTTTTGCGGTTGGTTTTGT 1341
||||||||||||||||||||||||||||||||| |||||||| |||| |||| |||||||
Sbjct 1406 GCGTCCCGGATCATATACTGGTCCAACTATCAGAGTCTAGATATTTGTGGTTTGTTTTGT 1465
Query 1342 AGCGACGTAGAGCAACTCTTGTATCATTCCAAGATAAGTTTCTGGAGAAGATATCAAAAT 1401
||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 1466 AGCAAAGTAGAGCAACTCTTGTAACATTCCAAGATAAGTTTCTGGAGAAGATATCAA--T 1523
Query 1402 ACAAATTTCAGATGAAAGATGAACTCTTTGATTAGTCCAT 1441
|| | |||||||| |||||||||||||||| |||||||||
Sbjct 1524 ACGA-TTTCAGATTAAAGATGAACTCTTTGTTTAGTCCAT 1562
Score = 207 bits (112), Expect = 2e-52
Identities = 170/195 (87%), Gaps = 16/195 (8%)
Strand=Plus/Plus
Query 1 TCTTCACTCTAACTCAAGACATCAAAGTACGACTTTCTTGTGGACAAGTTGTGTAGAGCG 60
||||||||| ||| |||||||||||||| |||||||||||||||||||||||| ||| |
Sbjct 1 TCTTCACTCGAACCCAAGACATCAAAGTTCGACTTTCTTGTGGACAAGTTGTGCAGA--G 58
Query 61 TA-ATGGCTCGTGCCGTCATGGCCTCTGTGAGGATAACCGG---A-----A----ACTAT 107
| |||||||||||||||||| |||||||||||||||||| | | |||||
Sbjct 59 -ACATGGCTCGTGCCGTCATGTTCTCTGTGAGGATAACCGGAAAATTCCCATCTCACTAT 117
Query 108 GTTAAGGCGATGTGTAATGTGTTTGGAAATGATGAGAAGAAAGTGAAAGGGTATGTTGTG 167
|| ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 118 GTGAAGGCGATGTGTAATGTGTTTGGAAATGACGAGAAGAAAGTGAAAGAGTATGTTGTG 177
Query 168 AAGAAATGGTTGGGA 182
|||||||||||||||
Sbjct 178 AAGAAATGGTTGGGA 192
Score = 128 bits (69), Expect = 1e-28
Identities = 96/107 (90%), Gaps = 9/107 (8%)
Strand=Plus/Plus
Query 182 ATTGTCTTTAGTGATAGAGTATTAGTCTATTAACAATTAGCTAAGGTTTTCATCGGTAAA 241
|||||||||| | | || ||||||||||||||||||||||||||||||||||| | |||
Sbjct 244 ATTGTCTTTA--G-T-GA-TATTAGTCTATTAACAATTAGCTAAGGTTTTCATCCG-AAA 297
Query 242 GTCAAAAAAGATTATGCAAATTAAAACGAC-CGAATTAGTaaaaaaa 287
||| |||||||||||||||||||||||||| | |||||||||| |||
Sbjct 298 GTC-AAAAAGATTATGCAAATTAAAACGACAC-AATTAGTAAAGAAA 342
> AT1G18486.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G02655.1); Has
30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr1:6366397-6366753 FORWARD LENGTH=357
Length=357
Score = 207 bits (112), Expect = 2e-52
Identities = 170/195 (87%), Gaps = 16/195 (8%)
Strand=Plus/Plus
Query 1 TCTTCACTCTAACTCAAGACATCAAAGTACGACTTTCTTGTGGACAAGTTGTGTAGAGCG 60
||||||||| ||| |||||||||||||| |||||||||||||||||||||||| ||| |
Sbjct 124 TCTTCACTCGAACCCAAGACATCAAAGTTCGACTTTCTTGTGGACAAGTTGTGCAGA--G 181
Query 61 TA-ATGGCTCGTGCCGTCATGGCCTCTGTGAGGATAACCGG---A-----A----ACTAT 107
| |||||||||||||||||| |||||||||||||||||| | | |||||
Sbjct 182 -ACATGGCTCGTGCCGTCATGTTCTCTGTGAGGATAACCGGAAAATTCCCATCTCACTAT 240
Query 108 GTTAAGGCGATGTGTAATGTGTTTGGAAATGATGAGAAGAAAGTGAAAGGGTATGTTGTG 167
|| ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 241 GTGAAGGCGATGTGTAATGTGTTTGGAAATGACGAGAAGAAAGTGAAAGAGTATGTTGTG 300
Query 168 AAGAAATGGTTGGGA 182
|||||||||||||||
Sbjct 301 AAGAAATGGTTGGGA 315
> AT4G02655.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G18486.1); Has
30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr4:1158848-1159422 FORWARD LENGTH=575
Length=575
Score = 122 bits (66), Expect = 7e-27
Identities = 77/82 (94%), Gaps = 2/82 (2%)
Strand=Plus/Plus
Query 102 AACTATGTTAAGGCGATGTGTAATGTGTTTGGAAATGATGAGAAGAAAGTGAAAGG-GTA 160
|||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||
Sbjct 272 AACTATGTTAAGGCTATGTGTAATGTGTTTGGAAATGATGAGAAGAAAGTGAA-GGAGTA 330
Query 161 TGTTGTGAAGAAATGGTTGGGA 182
|||| || ||||||||||||||
Sbjct 331 TGTTCTGGAGAAATGGTTGGGA 352
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71033771175
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5