BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472070
Length=2054
Score E
Sequences producing significant alignments: (Bits) Value
AT1G18500.1 | Symbols: MAML-4, IPMS1 | methylthioalkylmalate sy... 3253 0.0
AT1G74040.1 | Symbols: IMS1, MAML-3, IPMS2 | 2-isopropylmalate ... 1844 0.0
AT3G32445.1 | Symbols: | pseudogene, putative ribonucleotide r... 159 7e-38
> AT1G18500.1 | Symbols: MAML-4, IPMS1 | methylthioalkylmalate
synthase-like 4 | chr1:6369347-6373025 FORWARD LENGTH=2060
Length=2060
Score = 3253 bits (1761), Expect = 0.0
Identities = 1946/2036 (96%), Gaps = 9/2036 (0%)
Strand=Plus/Plus
Query 1 ATGGCGTCTTCGCTTCTGAGAAACCCTAACCTCTACTCATCAACAACAATCACCACCACT 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGTCTTCGCTTCTGAGAAACCCTAATCTCTACTCATCAACAACAATCACCACCACT 60
Query 61 CCTTTTCTTCCCACCTTCTCCTCTAAACCCACACCTGTCTCCT-C-C-TTCCGTTTCCAA 117
||||||||||||||||||||||||||||||||||| |||||| | | ||||||||||||
Sbjct 61 TCTTTTCTTCCCACCTTCTCCTCTAAACCCACACCTATCTCCTCCTCTTTCCGTTTCCAA 120
Query 118 CCATCCCACCACCGTTCAATCTCCCTCCGAACTCAAGCCCTCCGTCTCTCATGCTCAATC 177
||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 121 CCATCTCACCACCGTTCAATCTCCCTCCGAAGTCAAACCCTCCGTCTCTCATGCTCAATC 180
Query 178 TCAGATCCTTCTCCACTACCACCTCACACTCCTCGCCG-CCGCCGCCCTGAATACATCCC 236
|||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||
Sbjct 181 TCAGATCCTTCTCCACTACCACCTCACACTCCTCGCCGTCC-CCGTCCTGAATACATCCC 239
Query 237 TAACCGCATTTCCGATCCAAACTACGTCCGTGTCTTCGATACAACTCTCCGTGACGGTGA 296
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 240 CAACCGCATTTCCGATCCAAACTACGTCCGCGTCTTCGATACTACTCTCCGTGACGGTGA 299
Query 297 ACAGTCTCCAGGCGCTACACTCACTTCCAAGGAAAAGCTCGACATCGCTCGTCAGCTAGC 356
||| |||||||| |||||||| |||||||||||||| || ||||||||||||||||||||
Sbjct 300 ACAATCTCCAGGAGCTACACTTACTTCCAAGGAAAAACTTGACATCGCTCGTCAGCTAGC 359
Query 357 TAAACTCGGTGTTGACATTATCGAAGCTGGGTTTCCAGCTGCTTCTAAGGATGATTTTGA 416
|||||| ||||||||||| ||||| ||||||||||| |||||||| ||||||||||||||
Sbjct 360 TAAACTTGGTGTTGACATCATCGAGGCTGGGTTTCCTGCTGCTTCCAAGGATGATTTTGA 419
Query 417 AGCGGTTAAGACTATAGCTGAAACAATTGGAAACACTGTTGATGAGAATGGTTATGTTCC 476
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 420 AGCGGTTAAGACTATAGCTGAAACAGTTGGAAACACTGTTGATGAGAATGGTTATGTTCC 479
Query 477 TGTTATCTGTGGACTCTCTAGATGCAATAAGAAGGATATTGAGAGAGCTTGGGATGCTGT 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TGTTATCTGTGGACTCTCTAGATGCAATAAGAAGGATATTGAGAGAGCTTGGGATGCTGT 539
Query 537 CAAATACGCTAAACGGCCTAGGATTCATACTTTTATCGCTACGAGTGATATTCATTTGGA 596
||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||
Sbjct 540 GAAATACGCTAAACGGCCTAGGATTCATACTTTTATAGCTACTAGTGATATACATTTGGA 599
Query 597 GCATAAACTGAAGAAAACCAAAGCAGAGGTCATCGAAATCGCTAGGAATATGGTTAGATT 656
| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 600 GTATAAACTAAAGAAAACCAAAGCAGAGGTCATCGAAATCGCTAGGAGTATGGTTAGATT 659
Query 657 CGCGAGGAGCTTGGGTTGCGAAGATGTCGAGTTCAGTCCAGAAGATGCAGGAAGATCGGA 716
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 660 CGCGAGGAGCTTGGGGTGCGAAGATGTTGAGTTCAGTCCAGAAGATGCAGGAAGATCGGA 719
Query 717 GAGAGAGTACTTATACGAGATTCTTGGTGAAGTGATAAAAGCAGGAGCAACTACACTCAA 776
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 720 GAGAGAGTACTTATACGAGATTCTTGGTGAAGTGATAAAAGCAGGAGCAACAACTCTCAA 779
Query 777 CATACCTGATACTGTTGGTATAACTTTGCCTAGTGAGTTTGGTCAATTGATTACTGATTT 836
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 780 CATACCTGATACTGTTGGTATAACTTTGCCTAGTGAGTTTGGTCAACTGATTACTGATTT 839
Query 837 AAAGGCCAATACTCCAGGGATTGAAAATGTTGTCATCTCAACACATTGTCAGAATGATCT 896
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 AAAGGCCAATACTCCGGGGATTGAAAATGTTGTCATCTCAACACATTGTCAGAATGATCT 899
Query 897 TGGACTCTCTACGGCCAACACTTTATCTGGGGCACATGCAGGTGCCAGGCAGGTGGAAGT 956
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 900 TGGACTCTCTACGGCCAACACTTTATCTGGGGCACATGCAGGTGCGAGGCAGATGGAAGT 959
Query 957 GACTATCAATGGAATCGGGGAAAGAGCTGGAAATGCTTCACTGGAAGAGGTTGTGATGGC 1016
||| ||||||||||| || |||||||||||||| ||||||||||||||||||||||||||
Sbjct 960 GACGATCAATGGAATTGGTGAAAGAGCTGGAAACGCTTCACTGGAAGAGGTTGTGATGGC 1019
Query 1017 CATAAAATGCCGTGGAGATCATGTATTAGGAGGTCTATTTACTGGAATTGATACTCGGCA 1076
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1020 CATAAAATGCCGTGGAGATCATGTATTAGGAGGTCTATTTACCGGAATTGATACTCGGCA 1079
Query 1077 CATTGTTATGACAAGCAAGATGGTGGAAGAGTACACAGGAATGCAGACACAGCCACATAA 1136
|||||||||||||||||||||||| || |||||||| || ||||||||||| || |||||
Sbjct 1080 CATTGTTATGACAAGCAAGATGGTAGAGGAGTACACTGGGATGCAGACACAACCTCATAA 1139
Query 1137 GGCTATTGTAGGAGCGAATGCCTTTGCGCATGAAAGTGGTATCCATCAGGATGGAATGCT 1196
||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||
Sbjct 1140 GGCTATTGTAGGAGCGAATGCCTTTGCGCATGAAAGTGGAATTCACCAGGATGGAATGCT 1199
Query 1197 AAAACACAAGGGTACATATGAAATTATATGTCCCGAAGAGATTGGACTTGAACGATCAAA 1256
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1200 GAAACACAAGGGTACATATGAAATTATATGTCCCGAAGAAATTGGACTTGAACGATCAAA 1259
Query 1257 TGATGCTGGCATTGTCTTGGGGAAGCTTAGTGGGCGTCATGCGCTGAAAGACCGTTTGAC 1316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 TGATGCTGGCATTGTCTTGGGGAAGCTTAGTGGGCGTCATGCGCTGAAAGACCGTTTGAC 1319
Query 1317 TGAGCTTGGTTATCAATTAGATGATGAACAGCTAAGTACCATTTTCTGGCGTTTCAAAAC 1376
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1320 TGAGCTTGGTTATCAATTAGATGATGAACAGCTAAGTACCATTTTCTGGCGCTTCAAAAC 1379
Query 1377 TGTGGCTGAGCAGAAAAAGAAAGTTACCGATGCGGACATAATAGCTTTAGTATCTGATGA 1436
||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 1380 CGTGGCTGAGCAGAAAAAGAGAGTTACTGATGCGGACATAATAGCTTTAGTATCTGATGA 1439
Query 1437 AGTTTTTCAGCCAGAAGCCGTGTGGAAACTCCTGGACATTCAGATAACTTGTGGAACTCT 1496
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 AGTTTTCCAGCCAGAAGCCGTGTGGAAACTCCTGGACATTCAGATAACTTGTGGAACTCT 1499
Query 1497 CGGGCTTTCAACAGCAACTGTAAAACTTGCTGACACTGATGGCAAAGAACATGTCGCTTG 1556
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1500 CGGGCTTTCAACAGCAACTGTAAAACTTGCTGACGCTGATGGCAAAGAACATGTCGCTTG 1559
Query 1557 TTCCATTGGAACTGGGCCTGTCGATTCAGCTTACAAGGCAGTCGATCTTATCGTAAAGGA 1616
||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1560 TTCTATTGGAACTGGGCCTGTGGATTCAGCTTACAAGGCAGTAGATCTTATCGTAAAGGA 1619
Query 1617 ACCTGCGACCCTGCTTGAGTACTCAATGAATGCAGTAACAGAAGGGATCGATGCCATCGC 1676
||| || || ||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1620 ACCGGCTACTCTGCTTGAGTACTCAATGAATGCAGTAACAGAAGGCATTGATGCCATCGC 1679
Query 1677 AACCACACGAGTTCTTATCCGTGGAAGCAACAAATACTCATCTACAAACGCAGTAACTGG 1736
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1680 AACCACAAGAGTTCTTATCCGTGGAAGCAACAAATACTCATCTACAAACGCAATAACTGG 1739
Query 1737 TGAAGAAGTTCAAAGGACCTTTAGTGGAACTGGAGCAGGAATGGATATTGTGGTGTCAAG 1796
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1740 TGAAGAGGTTCAAAGAACCTTTAGTGGAACTGGAGCAGGAATGGATATTGTGGTGTCAAG 1799
Query 1797 CGTCAAAGCTTATGTAGGAGCCTTGAACAAAATGATGGACTTCAAAGAAAACTCCCCCAC 1856
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 1800 CGTCAAAGCTTATGTTGGAGCTTTGAACAAAATGATGGACTTCAAAGAAAACTCCGCCAC 1859
Query 1857 AAAAATCCCTTCCCaaaaaaaCAGAGTCCCTGCCTGAATTAAAAATCTTTCCGGCAAAAA 1916
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1860 AAAAATCCCTTCCCAAAAAAACAGAGTCGCTGCCTGAATTAAAAATCTTTCCGGCAAATA 1919
Query 1917 CCAAA--GTCAGGCAAAAGTTAGGTTCTTTTCTTTTCAAGTACATAGTTTGGTAATAACT 1974
||||| ||||| || ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1920 CCAAAAAGTCAGACAGAAGTTAGGTTCTTTTATTTTCAAGTACATAGTTTGGTAATAACT 1979
Query 1975 GCAGTTTCAGAGTTTGCTTCTTGTTTATC-AATGTTGCATGTCAAAAGAGTTTGGT 2029
| |||||| |||||||||| ||||||||| || |||||||||||||||||||||||
Sbjct 1980 GGAGTTTCGGAGTTTGCTTGTTGTTTATCGAA-GTTGCATGTCAAAAGAGTTTGGT 2034
> AT1G74040.1 | Symbols: IMS1, MAML-3, IPMS2 | 2-isopropylmalate
synthase 1 | chr1:27842171-27845776 FORWARD LENGTH=2193
Length=2193
Score = 1844 bits (998), Expect = 0.0
Identities = 1454/1678 (87%), Gaps = 15/1678 (1%)
Strand=Plus/Plus
Query 185 CTTCTCCACTACCACCTCACACTCCTCGCCGCCGCCGCCCTGAA-TACATCCCTAACCGC 243
|||| || ||||||||||| |||||||||| || ||| || ||||||||||||||
Sbjct 272 CTTCACCTCTACCACCTCATGCTCCTCGCCGTCG--TCCC--AATTACATCCCTAACCGT 327
Query 244 ATTTCCGATCCAAACTACGTCCGTGTCTTCGATACAACTCTCCGTGACGGTGAACAGTCT 303
|| |||||||| || |||||| | ||||||||||||||||||| |||||||||||||||
Sbjct 328 ATATCCGATCCCAATTACGTCAGAATCTTCGATACAACTCTCCGAGACGGTGAACAGTCT 387
Query 304 CCAGGCGCTACACTCACTTCCAAGGAAAAGCTCGACATCGCTCGTCAGCTAGCTAAACTC 363
|| || |||||||| || ||||||||||||||||| ||||||||||| |||| || |||
Sbjct 388 CCCGGAGCTACACTAACCTCCAAGGAAAAGCTCGATATCGCTCGTCAATTAGCCAAGCTC 447
Query 364 GGTGTTGACATTATCGAAGCTGGGTTTCCAGCTGCTTCTAAGGATGATTTTGAAGCGGTT 423
|| || ||||| ||||||||||| ||||| |||||||| || || ||||| ||||| |||
Sbjct 448 GGAGTCGACATCATCGAAGCTGGATTTCCCGCTGCTTCAAAAGACGATTTCGAAGCTGTT 507
Query 424 AAGACTATAGCTGAAACAATTGGAAACACTGTTGATGAGAATGGTTATGTTCCTGTTATC 483
|| || |||||||| || |||| || || || || || ||||| ||||| ||||| |||
Sbjct 508 AAAACCATAGCTGAGACTGTTGGCAATACCGTCGACGAAAATGGCTATGTCCCTGTAATC 567
Query 484 TGTGGACTCTCTAGATGCAATAAGAAGGATATTGAGA-GAGCTTGGGATGCTGTCAAATA 542
||||| ||||| ||||| || |||||||||||||||| | |||||||| ||||| || ||
Sbjct 568 TGTGGTCTCTCGAGATGTAACAAGAAGGATATTGAGACG-GCTTGGGAAGCTGTGAAGTA 626
Query 543 CGCTAAACGGCCTAGGATTCATACTTTTATCGCTACGAGTGATATTCATTTGGAGCATAA 602
|||||| ||||| || || ||||| ||||| || || |||||||||||| || || ||||
Sbjct 627 CGCTAAGCGGCCAAGAATCCATACGTTTATTGCCACTAGTGATATTCATCTGAAGTATAA 686
Query 603 ACTGAAGAAAACCAAAGCAGAGGTCATCGAAATCGCTAGGAATATGGTTAGATTCGCGAG 662
||||||| | |||| ||| || || || ||||||||||| |||||||||||||| ||
Sbjct 687 GTTGAAGAAGAGTAAAGAAGAAGTTATTGAGATCGCTAGGAACATGGTTAGATTCGCCAG 746
Query 663 GAGCTTGGGTTGCGAAGATGTCGAGTTCAGTCCAGAAGATGCAGGAAGATCGGAGAGAGA 722
|||||||| || |||||||| || || |||||||||||||| |||||||||||||||||
Sbjct 747 AAGCTTGGGATGTGAAGATGTTGAATTTAGTCCAGAAGATGCCGGAAGATCGGAGAGAGA 806
Query 723 GTACTTATACGAGATTCTTGGTGAAGTGATAAAAGCAGGAGCAACTACACTCAACATACC 782
|||||||||||||||||||||||||||||| ||||| |||||||| || || ||||||||
Sbjct 807 GTACTTATACGAGATTCTTGGTGAAGTGATCAAAGCTGGAGCAACCACTCTTAACATACC 866
Query 783 TGATACTGTTGGTATAACTTTGCCTAGTGAGTTTGGTCAATTGATTACTGAT-TTAAAGG 841
||| |||||||||||||| |||||||||||||||||||| |||||| ||||| ||||||
Sbjct 867 TGACACTGTTGGTATAACCTTGCCTAGTGAGTTTGGTCAGTTGATTGCTGATATTAAAG- 925
Query 842 CCAATACTCCAGGGATTGAAAATGTTGTCATCTCAACACATTGTCAGAATGATCTTGGAC 901
| |||||||| ||||| |||||||| | ||||| |||||||||||||||||||||||||
Sbjct 926 CTAATACTCCTGGGATCCAAAATGTTATAATCTCTACACATTGTCAGAATGATCTTGGAC 985
Query 902 TCTCTACGGCCAACACTTTATCTGGGGCACATGCAGGTGCCAGGCAGGTGGAAGTGACTA 961
|||| || ||||||||||||||||| |||||| | || || ||||| |||||||||||||
Sbjct 986 TCTCCACCGCCAACACTTTATCTGGTGCACATTCGGGCGCGAGGCAAGTGGAAGTGACTA 1045
Query 962 TCAATGGAATCGGGGAAAGAGCTGGAAATGCTTCACTGGAAGAGGTTGTGATGGCCATAA 1021
|||||||||| || |||||||||||||| |||||| ||||||||||||| ||||||||||
Sbjct 1046 TCAATGGAATTGGCGAAAGAGCTGGAAACGCTTCATTGGAAGAGGTTGTCATGGCCATAA 1105
Query 1022 AATGCCGTGGAGATCATGTATTAGGAGGTCTATTTACTGGAATTGATACTCGGCACATTG 1081
||||||||||||||||||| |||||||| |||||||||||||| ||||| ||||||||||
Sbjct 1106 AATGCCGTGGAGATCATGTCTTAGGAGGCCTATTTACTGGAATCGATACCCGGCACATTG 1165
Query 1082 TTATGACAAGCAAGATGGTGGAAGAGTACACAGGAATGCAGACACAGCCACATAAGGCTA 1141
||||||||||||||||||| || |||||||| || ||||| || ||||| ||||||||||
Sbjct 1166 TTATGACAAGCAAGATGGTTGAGGAGTACACTGGTATGCAAACGCAGCCCCATAAGGCTA 1225
Query 1142 TTGTAGGAGCGAATGCCTTTGCGCATGAAAGTGGTATCCATCAGGATGGAATGCTAAAAC 1201
|||||||||| || ||||||||||||||||||||||| ||||||||||||||||| || |
Sbjct 1226 TTGTAGGAGCAAACGCCTTTGCGCATGAAAGTGGTATTCATCAGGATGGAATGCTGAAGC 1285
Query 1202 ACAAGGGTACATATGAAATTATATGTCCCGAAGAGATTGGACTTGAACGATCAAATGATG 1261
|||||||||| ||||||||||| | |||||||||||||| ||||| |||||||||||||
Sbjct 1286 ACAAGGGTACCTATGAAATTATGTCCCCCGAAGAGATTGGGCTTGAGCGATCAAATGATG 1345
Query 1262 CTGGCATTGT-CTTGGGGAAGCTTAGTGGGCGTCATGCGCTGAAAGACCGTTTGACTGAG 1320
||||||| || || ||| ||||||||||||||||| || |||||||||||||| | ||||
Sbjct 1346 CTGGCATCGTGCT-GGGAAAGCTTAGTGGGCGTCACGCACTGAAAGACCGTTTAAATGAG 1404
Query 1321 CTTGGTTATCAATTAGATGATGAACAGCTAAGTA-CCATTTTCTGGCGTTTCAAAACTGT 1379
|| |||||| | ||||||| |||||||| | || ||||||||||||||||| ||||
Sbjct 1405 CTCGGTTATGTCCTGGATGATGGGCAGCTAAGCAACC-TTTTCTGGCGTTTCAAAGCTGT 1463
Query 1380 GGCTGAGCAGAAAAAGAAAGTTACCGATGCGGACATAATAGCTTTAGTATCTGATGAAGT 1439
||| ||||| ||||||| |||||||||||| ||| |||||||||||||||||||||||||
Sbjct 1464 GGCAGAGCAAAAAAAGAGAGTTACCGATGCTGACTTAATAGCTTTAGTATCTGATGAAGT 1523
Query 1440 TTTTCAGCCAGAAGCCGTGTGGAAACTCCTGGACATTCAGATAACTTGTGGAACTCTCGG 1499
||||||||||| || || ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1524 GTTTCAGCCAGAGGCTGTCTGGAAACTCCTGGACATGCAGATAACTTGTGGAACTCTCGG 1583
Query 1500 GCTTTCAACAGCAACTGTAAAACTTGCTGACACTGATGGCAAAGAACATGTCGCTTGTTC 1559
|| |||||| | |||||||||||||||||| | ||||||||||| ||||| ||||||||
Sbjct 1584 TCTCTCAACATCTACTGTAAAACTTGCTGACTCCGATGGCAAAGAGCATGTAGCTTGTTC 1643
Query 1560 CATTGGAACTGGGCCTGTCGATTCAGCTTACAAGGCAGTCGATCTTATCGTAAAGGAACC 1619
||||||| || ||||| ||| |||||||||||||||| ||||||||||| ||||||||
Sbjct 1644 TGTTGGAACCGGACCTGTAGATGCAGCTTACAAGGCAGTTGATCTTATCGTTAAGGAACC 1703
Query 1620 TGCGACCCTGCTTGAGTACTCAATGAATGCAGTAACAGAAGGGATCGATGCCATCGCAAC 1679
|||||| |||||||||||||| |||||||||||||||||||| || ||||| || |||||
Sbjct 1704 TGCGACTCTGCTTGAGTACTCGATGAATGCAGTAACAGAAGGCATTGATGCTATTGCAAC 1763
Query 1680 CACACGAGTTCTTATCCGTGGA-AGCAACAAATACTCATCTACAAACGCAGTAACTGGTG 1738
|||||| ||||| ||||| ||| | |||||| |||||||| |||||||| ||||| ||||
Sbjct 1764 CACACGGGTTCTAATCCGCGGAGA-CAACAACTACTCATCAACAAACGCGGTAACGGGTG 1822
Query 1739 AAGAAGTTCAAAGGACCTTTAGTGGAACTGGAGCAGGAATGGATATTGTGGTGTCAAGCG 1798
|| ||| |||| || ||||||||||| |||||||||||||| ||||| ||||| ||||
Sbjct 1823 AATCTGTTGAAAGAACTTTTAGTGGAACCGGAGCAGGAATGGACATTGTTGTGTCGAGCG 1882
Query 1799 TCAAAGCTTATGTAGGAGCCTTGAACAAAATGATGGACTTCAAAGAAAACTCCCCCAC 1856
| ||||||||||| ||||| |||||||||||| ||| ||||||||| || || ||||
Sbjct 1883 TTAAAGCTTATGTTGGAGCTTTGAACAAAATGTTGGGTTTCAAAGAACACACCTCCAC 1940
> AT3G32445.1 | Symbols: | pseudogene, putative ribonucleotide
reductase, blastp match of 60% identity and 6.2e-22 P-value
to SP|O04974|LU1B_LYCPN 2-isopropylmalate synthase B (EC 4.1.3.12)
(Alpha-isopropylmalate synthase B) (Alpha-IPM synthetase
B). (Tomato) {Lycopersicon pennellii} | chr3:13384833-13387113
FORWARD LENGTH=2281
Length=2281
Score = 159 bits (86), Expect = 7e-38
Identities = 112/125 (90%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 1614 GGAACCTGCGACCCTGCTTGAGTACTCAATGAATGCAGTAACAGAAGGGATCGATGCCAT 1673
||||| | | || || |||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1939 GGAACATACAACTCTTCTTGAGTACTCAATGAATGCAGTAACAGAAGGCATTGATGCCAT 1998
Query 1674 CGCAACCACACGAGTTCTTATCCGTGGAAGCAACAAATACTCATCTACAAACGCAGTAAC 1733
|||||| ||||||||| |||||||||||||| ||||| || ||||||||||| |||||||
Sbjct 1999 CGCAACTACACGAGTTTTTATCCGTGGAAGCTACAAAAACACATCTACAAACACAGTAAC 2058
Query 1734 TGGTG 1738
|||||
Sbjct 2059 TGGTG 2063
Score = 147 bits (79), Expect = 6e-34
Identities = 89/94 (95%), Gaps = 0/94 (0%)
Strand=Plus/Plus
Query 1666 GATGCCATCGCAACCACACGAGTTCTTATCCGTGGAAGCAACAAATACTCATCTACAAAC 1725
|||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 2068 GATGCCATCGCAACTACACGAGTTTTTATCCGTGGAAGAAACAAATACTCATCTACAAAC 2127
Query 1726 GCAGTAACTGGTGAAGAAGTTCAAAGGACCTTTA 1759
||||||||||||||||| ||||||| ||||||||
Sbjct 2128 GCAGTAACTGGTGAAGAGGTTCAAAAGACCTTTA 2161
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101806705260
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5