BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472077
Length=1467
Score E
Sequences producing significant alignments: (Bits) Value
AT1G18570.1 | Symbols: MYB51, AtMYB51, BW51A, BW51B, HIG1 | myb... 1881 0.0
AT2G16720.1 | Symbols: MYB7, ATMYB7, ATY49 | myb domain protein... 132 1e-29
AT4G26930.1 | Symbols: MYB97, AtMYB97 | myb domain protein 97 |... 76.8 5e-13
> AT1G18570.1 | Symbols: MYB51, AtMYB51, BW51A, BW51B, HIG1 | myb
domain protein 51 | chr1:6389411-6391267 FORWARD LENGTH=1654
Length=1654
Score = 1881 bits (1018), Expect = 0.0
Identities = 1168/1239 (94%), Gaps = 15/1239 (1%)
Strand=Plus/Plus
Query 173 GTTTTACTTGAGAACAACCCCCTTTGAACTCGATCAAG-AAGCCTGAGTTTCTTTGAAGA 231
|||| ||||||||||||||||||||||||||||||||| ||| || || ||||||||
Sbjct 293 GTTTCACTTGAGAACAACCCCCTTTGAACTCGATCAAGAAAG-CTAAG----TTTGAAGA 347
Query 232 ATCAAGAATGGTGCGGACACCGTGTTGCAAAGCTGAACTAGGGTTAAAGAAAGGAGCTTG 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 348 ATCAAGAATGGTGCGGACACCGTGTTGCAAAGCTGAACTAGGGTTAAAGAAAGGAGCTTG 407
Query 292 GACTCCCGAGGAAGATCAGAAGCTTCTCTCTTACCTCAACCGTCACGGTGAAGGTGGATG 351
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 408 GACTCCCGAGGAAGATCAGAAGCTTCTCTCTTACCTTAACCGCCACGGTGAAGGTGGATG 467
Query 352 GCGAACTCTCCCCGAAAAAGCTGGACTCAAGAGGTGCGGCAAAAGCTGCAGACTGAGATG 411
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 468 GCGAACTCTCCCCGAAAAAGCTGGACTCAAGAGATGCGGCAAAAGCTGCAGACTGAGATG 527
Query 412 GGCTAATTATCTTAGACCTGACATCAAAAGAGGAGAGTTCACTGAAGACGAAGAATGTTC 471
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 528 GGCCAATTATCTTAGACCTGACATCAAAAGAGGAGAGTTCACTGAAGACGAAGAACGTTC 587
Query 472 TATCATCTCTCTTCACGCCCTTCACGGCAACAAATGGTCCGCTATAGCTCGTGGATTACC 531
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 588 AATCATCTCTCTTCACGCCCTTCACGGCAACAAATGGTCTGCTATAGCTCGTGGACTACC 647
Query 532 AGGAAGAACCGATAACGAGATCAAGAACTACTGGAACACTCATATCAAGAAACGTTTGAT 591
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 648 AGGAAGAACCGATAACGAGATCAAGAACTACTGGAACACTCATATCAAAAAACGTTTGAT 707
Query 592 TAAGAAAGGTATTGATCCGGTTACACACAAGGGCTTAAACTCCGGTACCGACAAATCAGA 651
||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||
Sbjct 708 CAAGAAAGGTATTGATCCAGTTACACACAAGGGCATAACCTCCGGTACCGACAAATCAGA 767
Query 652 AAACCTCCCGGAGAAACAAAACGTTAATCAGACAACTAGTGACGATGATCTTGATAATGA 711
||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||
Sbjct 768 AAACCTCCCGGAGAAACAAAATGTTAATCTGACAACTAGTGACCATGATCTTGATAATGA 827
Query 712 CAAGGCGAAGAAGAACAACAAGAATTCCGGATTATCATCGGCTAGGTTCTTGAACAGAGT 771
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||
Sbjct 828 CAAGGCGAAGAAGAACAACAAGAATTTTGGATTATCATCGGCTAGTTTCTTGAACAAAGT 887
Query 772 AGCTAATAGGTTCGGAAAGAGAATCAATCAGAGTGTTCTGTCTGAGATTATCGGAAGTGG 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 888 AGCTAATAGGTTCGGAAAGAGAATCAATCAGAGTGTTCTGTCTGAGATTATCGGAAGTGG 947
Query 832 AGGCCCACTTGctactactagtcacactactactactacaactacAAGTGTTTCCGTTGA 891
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 948 AGGCCCACTTGCTTCTACTAGTCACACTACTAATACTACAACTACAAGTGTTTCCGTTGA 1007
Query 892 CTCTGAATCAGATAAGTCAACGAGTTCTTCCTTCGCACCAACCTCAAATCTTCTCTGCCA 951
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1008 CTCTGAATCAGTTAAGTCAACGAGTTCTTCCTTCGCACCAACCTCGAATCTTCTCTGCCA 1067
Query 952 TGGGACCGTTGCAACAACACCTGTGTCATCGAACTTTGACGTTGATGGTAGCCTTAATCC 1011
||||||||||||||||||||| || ||||||||||||||||||||||||| | ||||||
Sbjct 1068 TGGGACCGTTGCAACAACACCAGTTTCATCGAACTTTGACGTTGATGGTAACGTTAATCT 1127
Query 1012 GACGTCTTCTTCGTCCACGTTCTCTGATGCCTCCGTTAACAATCCTCTAATGTACTGCGA 1071
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1128 GACGTGTTCTTCGTCCACGTTCTCTGATTCCTCCGTTAACAATCCTCTAATGTACTGCGA 1187
Query 1072 TAATTTCGTTGGTAATAATAACGTTGATGATGAGGATACTATCGGGTTC-CCGACATTTC 1130
|||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||
Sbjct 1188 TAATTTCGTTGGTAATAACAACGTTGATGATGAGGATACTATCGGGTTCTCC-ACATTTC 1246
Query 1131 TGAATGATGAAGATTTCATGATGTTGGAGGAATCTTGTGTTGACAACACTGCGTTCATGA 1190
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1247 TGAATGATGAAGATTTCATGATGTTGGAGGAGTCTTGTGTTGAAAACACTGCGTTCATGA 1306
Query 1191 AAGAACTTACGAGATTTCTTCATGAGGATGAAAATGACGTCGTTGATGTGCCGCCGGTCT 1250
||||||||||||| |||||||| ||||||||||| ||||||||||||||| |||||||||
Sbjct 1307 AAGAACTTACGAGGTTTCTTCACGAGGATGAAAACGACGTCGTTGATGTGACGCCGGTCT 1366
Query 1251 ATGAACGTCGAGA-TATGTTTGACGAGATTGATAACTATTTTGGATGAGAGAATCTCCTG 1309
||||||||| ||| | |||||||||| |||||||||||||||||||||| ||| ||| |
Sbjct 1367 ATGAACGTCAAGACT-TGTTTGACGAAATTGATAACTATTTTGGATGAGTGAAACTCATA 1425
Query 1310 GTCGATCAATCCCACCTAATCATGTCAATATGATGTCTATGGCTATGTTACCTTAATGAT 1369
||||| |||||||| | | |||||||||||||||||||||| ||||||||||| |||||
Sbjct 1426 ATCGATGAATCCCACGTGACCATGTCAATATGATGTCTATGGATATGTTACCTTGATGAT 1485
Query 1370 GATGAT---AATaa-aa-aaaTAATGATGATGATGGTGA 1403
| |||| ||||| || ||||||||||| ||||| |||
Sbjct 1486 GTTGATGGTAATAATAATAAATAATGATGGTGATGATGA 1524
Score = 204 bits (110), Expect = 2e-51
Identities = 130/139 (94%), Gaps = 3/139 (2%)
Strand=Plus/Plus
Query 41 CGATCTCGAGTA-CGCAAAAGAACAAGATGTCTATTCGAAGAATCTACAGATGTCTGAAT 99
|||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 129 CGATCTCGAGTATCACAAAAGAACAAGATGTCTATTCGAAGAATCTACCGATGTCTGAAT 188
Query 100 TCTTTAATCAAAAGATCCTGTGCTCAATCTCTATGATCATTCGCCCCATTTCTCACTTTG 159
||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||
Sbjct 189 TCTTTAATCAAAAGATCTTGTGCTCAATCTCTATGATCATACGCCCCATTTCACACTTTG 248
Query 160 TTTCACC-CTTCAGGTTTT 177
||||||| || ||| ||||
Sbjct 249 TTTCACCTCT-CAGTTTTT 266
Score = 75.0 bits (40), Expect = 2e-12
Identities = 40/40 (100%), Gaps = 0/40 (0%)
Strand=Plus/Plus
Query 1 CTCTCTTTGTGGTAAGAAAACAGAGCAACTAGATCTCTCT 40
||||||||||||||||||||||||||||||||||||||||
Sbjct 63 CTCTCTTTGTGGTAAGAAAACAGAGCAACTAGATCTCTCT 102
> AT2G16720.1 | Symbols: MYB7, ATMYB7, ATY49 | myb domain protein
7 | chr2:7255529-7256580 REVERSE LENGTH=980
Length=980
Score = 132 bits (71), Expect = 1e-29
Identities = 255/341 (75%), Gaps = 24/341 (7%)
Strand=Plus/Plus
Query 281 AAAGGAGCTTGGACTCCCGAGGAAGATCAGAAG-CTTCTCTCTTACCTCAA-CCGTCACG 338
||||| ||||||||| || |||||| || || || |||||||| |||| | |||||
Sbjct 70 AAAGGTGCTTGGACTAAAGAAGAAGATGAG-AGACTAGTCTCTTACATCAAGTC-TCACG 127
Query 339 GTGAAGGTGGATGGCGAACTC-TCCCCGAAAAAGCTGGACTCAAGAGGTGCGGCAAAAGC 397
|||||||| | |||||| ||| ||| | | ||||| ||| | ||||| ||||||
Sbjct 128 GTGAAGGTTGTTGGCGATCTCTTCCTAG-AGCCGCTGGTCTCCTTCGCTGCGGTAAAAGC 186
Query 398 TGCAGACTGAGATGGGCTAATTATCTTAGACCTGA-CATCAAAAGAGGAGAGTTCACTGA 456
||| | || | ||| ||| ||||| ||||||| | ||||||||||| | || || |
Sbjct 187 TGCCGTCTTCGGTGGATTAACTATCTCCGACCTGATC-TCAAAAGAGGAAACTTTACACA 245
Query 457 AGACGAAGAATGTTC-TATCATCTCTCTTCA-CGCCCTTC-ACGGCAACAAATGGTCCGC 513
|| |||| ||| | ||||||| ||||| | ||| | | |||||||| |||| |
Sbjct 246 TGATGAAG-ATGAACTTATCATCAAGCTTCATAG-CCTCCTA-GGCAACAAGTGGT-CTT 301
Query 514 T-ATAGCTCGTG-GATTACCAGGAAGAACCGATAACGAGATCAAGAACTACTGGAACACT 571
| || || | | ||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 302 TGATTGC-GGCGAGATTACCTGGAAGAACAGATAACGAGATCAAGAACTACTGGAACACA 360
Query 572 CATATCAAGA--AACGTTTGATTAAG-AAAGGTATTGATCC 609
||||| |||| || | || || || ||||| ||||||||
Sbjct 361 CATATAAAGAGGAA-GCTT--TTGAGCAAAGGGATTGATCC 398
> AT4G26930.1 | Symbols: MYB97, AtMYB97 | myb domain protein 97
| chr4:13527770-13529172 FORWARD LENGTH=1170
Length=1170
Score = 76.8 bits (41), Expect = 5e-13
Identities = 66/77 (86%), Gaps = 6/77 (8%)
Strand=Plus/Plus
Query 497 GGCAACAAATGGTC-CGCTATAGCTCG-TGGA-TTACCAGGAAGAACCGATAACGAGATC 553
|||||||||||| | ||| || ||| | | | |||||||| ||||| ||||||||||||
Sbjct 277 GGCAACAAATGGGCTCGC-ATGGCT-GCT-CAGTTACCAGGCAGAACAGATAACGAGATC 333
Query 554 AAGAACTACTGGAACAC 570
|||||||||||||||||
Sbjct 334 AAGAACTACTGGAACAC 350
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72338985345
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5