BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472079
Length=1266
Score E
Sequences producing significant alignments: (Bits) Value
AT1G18590.1 | Symbols: SOT17, ATSOT17, ATST5C | sulfotransferas... 1847 0.0
> AT1G18590.1 | Symbols: SOT17, ATSOT17, ATST5C | sulfotransferase
17 | chr1:6398580-6399942 FORWARD LENGTH=1363
Length=1363
Score = 1847 bits (1000), Expect = 0.0
Identities = 1131/1194 (95%), Gaps = 10/1194 (1%)
Strand=Plus/Plus
Query 1 AACGAGTATCAATCTCTTAATCACATAGCCaaaaa-aaTAA-ACTCTCTATAATGGAAGC 58
||||||||| |||||||| || ||||||||||||| || || |||||||||||||||| |
Sbjct 4 AACGAGTATTAATCTCTTCATTACATAGCCAAAAAGAA-AACACTCTCTATAATGGAATC 62
Query 59 AAAAACCATAAACGACGCCGTCGTATCAGAGTCGAATCACGAGTTAGCATCTTCGTCGCC 118
|||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 63 CAAAACCATAAACGACGTCGTCGTATCAGAGTCAAATCACGAGTTAGCATCTTCGTCGCC 122
Query 119 ATCAGAATTCGAGAAGAACCAGAAACATTACCAAGAAATCATCGCTACGCTTCCTCACAA 178
||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 123 ATCAGAATTTGAGAAGAACCAGAAACATTACCAAGAAATCATCGCAACTCTTCCTCACAA 182
Query 179 AGATGGATGGAGACCAAAAGATCCTTTCGTCGAGTACGGTGGTCACTGGTGGCTACAACC 238
|||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 183 AGATGGCTGGAGACCAAAAGATCCGTTCGTTGAGTACGGTGGTCACTGGTGGCTACAACC 242
Query 239 TCTCCTTGAAGGTTTACTTCACGCCCAGAAGTTCTTCAAGGCACGACCCAATGATTTCTT 298
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 243 TCTTCTTGAAGGTTTACTTCACGCCCAGAAGTTCTTCAAGGCACGTCCCAATGATTTCTT 302
Query 299 CGTCTGCAGCTACCCAAAAACCGGCACCACTTGGCTCAAAGCCTTAACTTTCGCAATCGC 358
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 303 CGTCTGCAGCTACCCAAAAACCGGCACGACTTGGCTCAAAGCCTTAACTTTCGCAATCGC 362
Query 359 GAATCGCTCCAAGTTCGACGATTCAACAAACCCTCTTCTCAAACGCAACCCACACGAGTT 418
||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||
Sbjct 363 AAATCGCTCCAAGTTCGACGTTTCAACAAACCCTCTTCTCAAACGTAATCCACACGAGTT 422
Query 419 TGTGCCTTACATAGAAATCGATTTCCCGTTTTTCCCAAGTGTTGATGTTCTTAAAGACGA 478
|||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 423 TGTGCCTTACATCGAAATCGACTTCCCGTTTTTCCCAAGCGTTGATGTTCTTAAAGACGA 482
Query 479 AGGAAACACGCTTTTCTCGACTCATATCCCTTACGATCTCTTGCCTGAATCAGTTGTGAA 538
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 483 AGGAAACACGCTTTTCTCGACTCATATCCCTTATGATCTCTTACCTGAATCAGTTGTGAA 542
Query 539 GTCCGGTTGCAAGATTGTTTACATATGGAGAGACCCAAAGGACACGTTTGTGTCCATGTG 598
|| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 543 ATCTGGTTGCAAGATTGTTTACATATGGAGAGACCCAAAGGACACGTTTGTGTCGATGTG 602
Query 599 GACTTTTGCTCACAAGGAGAGATCACAACAAGGATCACTCATTAGCCTTGAGGAAGCTTT 658
|||||||||||||||||||||||||||||||||| || | ||||| |||||||||||||
Sbjct 603 GACTTTTGCTCACAAGGAGAGATCACAACAAGGACCAGTGGTTAGCATTGAGGAAGCTTT 662
Query 659 TGATAAGTACTGTCAAGGTTTATCTGCTTACGGTCCTTATCTTGATCATGTTTTAGGGTA 718
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 663 TGATAAGTACTGTCAAGGTTTATCAGCTTACGGTCCTTATCTTGATCATGTTTTAGGGTA 722
Query 719 TTGGAAAGCTTACCAAGCAAACCCAAATCAGATTTTGTTTCTCAAGTATGAAACTATGAG 778
|||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||
Sbjct 723 TTGGAAAGCTTACCAAGCAAACCCGGATCAGATTTTGTTTCTCAAGTATGAGACAATGAG 782
Query 779 AGCTGATCCATTGCCGTATGTGAAGAGATTAGCTGAGTTTATGGGTTATGGATTCACAAA 838
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 783 AGCTGATCCATTGCCTTATGTGAAGAGATTAGCTGAGTTTATGGGTTATGGGTTCACGAA 842
Query 839 GGAGGAAGAGGAGGAAAAGGTTGTTGAGAAAGTTGTGAAGCTTTGTAGCTTTGAGAATTT 898
|||||||||||||| ||| |||||||||||||| |||||||||||||||||||||| |||
Sbjct 843 GGAGGAAGAGGAGGGAAATGTTGTTGAGAAAGTAGTGAAGCTTTGTAGCTTTGAGACTTT 902
Query 899 GAAGAATCTTGAAGCTAATAAAGGTGAGAAAGATAGAGAAGATCGTCCTGCTGTTTATGC 958
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 903 GAAGAATCTTGAAGCTAACAAAGGTGAGAAAGATAGAGAAGATCGTCCTGCTGTTTATGC 962
Query 959 CAACAGTGCGTATTTCAGGAAAGGGAAAGTTGGGGATTGGCAGAATTATCTGACTCCGGA 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 CAACAGTGCGTATTTCAGGAAAGGGAAAGTTGGGGATTGGCAGAATTATCTGACTCCGGA 1022
Query 1019 GATGGTGGCTCGTATTGATGGTTTGATGGAAGAGAAGTTCAAAGGAACTGGCTTTCTTAC 1078
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 1023 GATGGTGGCTCGTATTGATGGTTTGATGGAAGAGAAGTTTAAAGGAACTGGCTTTCTTTC 1082
Query 1079 TT-AAACATCATTAATGTGATCTTCTTTTGTCTTGTTTTCGAACTATGACTGTCTAATTC 1137
|| ||| ||||| ||||||||||||||||||||||||||||| |||||| ||||| ||||
Sbjct 1083 TTCAAA-ATCATGAATGTGATCTTCTTTTGTCTTGTTTTCGAGCTATGAATGTCTGATTC 1141
Query 1138 T-CATGATC-TTTATGCTGGTTTATAGCATAAGTTGCTTTTGTTTATTAGTATA 1189
| | ||||| ||| |||||||| ||||||||||||||||||||||| |||||||
Sbjct 1142 TTC-TGATCCTTT-TGCTGGTT-ATAGCATAAGTTGCTTTTGTTTACTAGTATA 1192
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62248675800
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5