BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472080
Length=1228
Score E
Sequences producing significant alignments: (Bits) Value
AT1G18600.1 | Symbols: ATRBL12, RBL12 | RHOMBOID-like protein 1... 1768 0.0
> AT1G18600.1 | Symbols: ATRBL12, RBL12 | RHOMBOID-like protein
12 | chr1:6400404-6402791 FORWARD LENGTH=1458
Length=1458
Score = 1768 bits (957), Expect = 0.0
Identities = 1087/1148 (95%), Gaps = 15/1148 (1%)
Strand=Plus/Plus
Query 96 CGAAAGCTCTCGCCTTTTCATTTTCGCCAATTGGGC-AA---A-T-TT--AC------T- 140
||||||||||||||||| ||||||||||||||| || || | | || || |
Sbjct 181 CGAAAGCTCTCGCCTTTACATTTTCGCCAATTGTGCAAATTTACTGTTCCACAAGTTTTC 240
Query 141 AAAATGAAGGCGATTTTCAACCGTAGAGTCGTCGTCGACTCATCTTCGCGTCTCACCAAG 200
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 241 AAAATGAAGGCGATCTTCAACCGTAGAGTTGTCGTCGACTCATCTTCGCGTCTCACCAAG 300
Query 201 CTGCTCACGAACCCAACTACTCATTCTCACCCGAATCGTCAAACTTTCATTTCGCTCTAT 260
|||||| |||| ||||||||||||||||||| ||||||||||||||||| ||| ||||||
Sbjct 301 CTGCTCGCGAATCCAACTACTCATTCTCACCTGAATCGTCAAACTTTCACTTCTCTCTAT 360
Query 261 AAACCGAACCAGAACCGCCATTTTCGAACACACTATCTTCCTTCAACCCCGTCGTCTCCT 320
||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 361 AAACCAAACCAGAGCCGCCATTTTCGAACACACTATCTTCCTTCAAGCCCGTCGTCTCCT 420
Query 321 CCCGTGAGCCGGTTTGACCCTTCTCAGCTATGGCGATCAGAGACAATTCGTGGGTTTTTC 380
||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 421 CCCGTGAGCCGCTTTGACCCTTCTCAGCTATGGCGATCGGAGAAAATTCGTGGGTTTTTC 480
Query 381 GCAACCGCTTTAGGGAACAAAGCCGTGAAATTGGGAAATCTAGTGGAATCAAGAGTTGGG 440
|| | |||||||||||||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct 481 GCGAGCGCTTTAGGGAACAAAGCTGTGAAATTGGGAAATCTCGTGGAATCCAGAGTTGGG 540
Query 441 TTCATTGGTTCTCAGTTTCCCAAAAAGGGTTTCGAATTCGAGAGGTTTTCTGGGTTTCAA 500
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 541 TTCATTGGTTCTCAGTTTCCCAAAAAGGGTTTCGAATTCCAGAGGTTTTCTGGGTTTCAA 600
Query 501 AGGCGTGGCTGGAAGCATTGGCTTCAAGGATTATCAGATCGTGACGTCGTTCTTGGATTA 560
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||
Sbjct 601 AGGCGTGGCTGGAAGCATTGGCTTCAAGGGTTATCAGATCGTGACGTTGTTCTTGGGTTA 660
Query 561 GTTATAGCTAACACTGGTGTGTTTATGATGTGGCGTGTTTTCAATCAACAATTCATGATG 620
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 661 GTTATAGCTAATGCTGGTGTGTTTGTGATGTGGCGTGTTTTCAATCAACAATTCATGATG 720
Query 621 AATAATTTCATGATATCGTTGGATAATTTCACGAGTGGGCGTCTACACACTCTGATAACT 680
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 721 AATAACTTCATGATATCGTTGGATAATTTCAAGAGTGGGCGTCTACACACTCTGATAACT 780
Query 681 TCAGCATTCAGTCATATTGATATTGGACATATCGTCTCAAACATGATTGGACTATACTTT 740
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 781 TCAGCATTCAGTCATATTGATATTGGACATATCGTCTCAAACATGATTGGACTCTACTTT 840
Query 741 TTTGGAACCAGTATCGCTAGAAACTTTGGCCCTCAGTTCCTTTTGAAGCTGTACCTTGCT 800
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 841 TTTGGAACCAGTATCGCTAGAAACTTTGGTCCTCAGTTCCTTTTGAAGCTGTACCTTGCT 900
Query 801 GGAGCCCTTGGTGGCTCTGTTTTCTACTTGATTCACCATGCTTATATGGCTACAACATCG 860
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 901 GGAGCCCTTGGGGGCTCTGTTTTCTACTTGATTCACCATGCTTATATGGCTGCAACATCG 960
Query 861 CCCAAGGGCCAAGGAGCTTTTGTGAGGGATCCATCGAGAACCCCGGGACTGGGCGCGAGT 920
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 961 CCCAAGGGTCAAGGAGCTTTCGTGAGGGATCCATCGAGAACCCCGGGACTGGGCGCGAGT 1020
Query 921 GGAGCCGTGAATGCCATCATGCTGCTGGATATCTTCCTGCACCCAACAGCTACTCTATAC 980
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 1021 GGAGCCGTGAATGCCATCATGCTGCTCGATATCTTCCTGCACCCAAGAGCTACTCTATAC 1080
Query 981 TTAGAATTCATCATTCCAGTTCCCGCAATGTTGCTTGGTATCTTCCTCATAGGAAAAGAC 1040
|| ||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1081 TTGGAATTTTTCATTCCAGTTCCGGCAATGTTGCTTGGTATCTTTCTCATAGGAAAAGAC 1140
Query 1041 ATTTTAAGGATAACAGAGGGGAACAGTAACATATCAGGTTCAGCTCATTTGGGAGGAGCT 1100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 ATTTTAAGGATAACAGAGGGGAACAGTAACATATCAGGTTCAGCTCATTTGGGAGGAGCT 1200
Query 1101 GCAGTTGCAGCCATCGCCTGGGCTCGGATTAGGAAAGGCCGCTTCCGCTTTTGACTTGAC 1160
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1201 GCAGTTGCAGCCATCGCCTGGGCTCGGATTAGGAAAGGCCGTTTCCGCTTTTGACTTGAC 1260
Query 1161 CTTGCTTGGTTTTGGTCATCTTTAGAGAAATCTTTCTTTAAATGATTTAAGTAACTTTGA 1220
||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||
Sbjct 1261 CTTGCTTGGTTTTGGTCATCTTTAGAGAAATCTATCTATAAATGATTTAAGTAAGTTTGA 1320
Query 1221 ATCTTTGA 1228
||||||||
Sbjct 1321 ATCTTTGA 1328
Score = 106 bits (57), Expect = 6e-22
Identities = 94/109 (86%), Gaps = 13/109 (12%)
Strand=Plus/Plus
Query 1 TTTCCAAAACATGAAGAAAGTTCTTACACAAAAACATCAAAGCTGCTCAATTTTG----- 55
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 16 TTTCCAAAACATCAAGAAAGTTCTTACACAAAAACATCAAAGCTGCTCAATTTTGGTCTG 75
Query 56 -A--T--AT---GTGTCGAACAGAGACTATCGAGTAATACCCAGTAGTC 96
| | || |||||| ||||||||||||||||||||||||||||||
Sbjct 76 CACATTGATTATGTGTCGGACAGAGACTATCGAGTAATACCCAGTAGTC 124
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60341055090
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5