BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472083
Length=3295
Score E
Sequences producing significant alignments: (Bits) Value
AT1G18620.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 4665 0.0
AT1G74160.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 130 9e-29
> AT1G18620.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: 22
plant structures; EXPRESSED DURING: 13 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G74160.1);
Has 1906 Blast hits to 1265 proteins in 203
species: Archae - 0; Bacteria - 130; Metazoa - 671; Fungi -
139; Plants - 265; Viruses - 11; Other Eukaryotes - 690 (source:
NCBI BLink). | chr1:6410033-6414451 FORWARD LENGTH=3385
Length=3385
Score = 4665 bits (2526), Expect = 0.0
Identities = 3010/3236 (93%), Gaps = 64/3236 (2%)
Strand=Plus/Plus
Query 1 GAAACATTTTGCAGAGGttcttttattctctcatcttcttcttcttggcttggcggtttc 60
|||||||||||||||||||| |||| | ||| |||||||| | || |||||||| ||||
Sbjct 12 GAAACATTTTGCAGAGGTTC-TTTA-T-TCT--TCTTCTTC-T-TT-GCTTGGCGCTTTC 63
Query 61 tttcttttccttagattttGAATGTACATTCTCTGATTCACAGTGATCTTCTTCTGGAAT 120
||||||| ||| || ||||||||||||||||||||| | ||||||||||||||||| |
Sbjct 64 TTTCTTTCCCTAAGGTTTTGAATGTACATTCTCTGA-T--CAGTGATCTTCTTCTGGGAG 120
Query 121 ATTAAGTTTTCCGAC-AAA-AG-----GTTCTGTAATAATGGAGCTTGTCTTATTCTTTT 173
||||||||||| ||| ||| || ||||||||||||||||||||||||||||| |||
Sbjct 121 ATTAAGTTTTCAGACAAAAGAGCTTTTGTTCTGTAATAATGGAGCTTGTCTTATTCCTTT 180
Query 174 TGGGGTTGAGATTTACTGGAAGCAC-A-AAAG-AGAG-T-AGACACTGTCACTACAGAGG 228
| || | |||||||||||||||| | |||| |||| | |||||||||||||||||||
Sbjct 181 T--GG--G-GATTTACTGGAAGCACAATAAAGAAGAGTTAAGACACTGTCACTACAGAGA 235
Query 229 GAAGAGTTCAAATTCTCTCCTTTTT-TCACCATTCATGGCTGCGAAGCTT-CTTCTTCAT 286
||||||||||||||||||||||||| | |||| | | || ||| || | | |
Sbjct 236 GAAGAGTTCAAATTCTCTCCTTTTTGTTACCAGT-A-----GC-AAG-TTCCGGCGCCGG 287
Query 287 ACATT-GGCAGATGAAAACT-C-GGATCTGCAGAAGAAAATTGGATGTATAAATGGGATT 343
| ||| | | || ||| || | || | | |||||||||||||||||||| |||||||||
Sbjct 288 AGATTCGCCGGA-GAACCCTCCTGG-T-TTCAGAAGAAAATTGGATGTATGAATGGGATT 344
Query 344 TTCCAAATCTTTGATCGCCACCATGTTCTCACAAGCCGGCGTCAAAGTCTTACTTTAGGT 403
||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||
Sbjct 345 TTCCAAATCTTTGATCGACACCATATTCTCACAAGCCGGCGTAAAAGTCTTACTTTAGGT 404
Query 404 AATGCACATGTCAGTAGTATCAACTTTGAAAGAGGCTCTGTTGATGCAATATGTCAGCAC 463
||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 405 AATGCACATGTCAATAGTATCAACTTTGAAAGAGACTCTGTTGATGCAATTTGTCAGCAA 464
Query 464 AGATCAGCATTTCAGTTTCAAGACTCAAACCTTATTAGTGGAAATGGGCCGAGTGAGAAA 523
|||||||||||||||| ||| |||||||||||| |||| | ||||| ||| ||||||
Sbjct 465 AGATCAGCATTTCAGTGTCAGGACTCAAACCTTGTTAGCAGTAATGGATTGAGCGAGAAA 524
Query 524 CTAACAAGGGTATCAACAGAATCTTCAAGGGTTTCTTTCTCATCGTCGTGTTCATCATCT 583
||||| ||| ||||||| |||| ||| ||||||||||||||||| |||||||||||||||
Sbjct 525 CTAACGAGGCTATCAACCGAATGTTCGAGGGTTTCTTTCTCATCATCGTGTTCATCATCT 584
Query 584 TCCCCATTGTCTTCTGAGGTCAACAGAGAAGTACAGCTTGAGATTTCTGCGGATGACCGA 643
||||| |||||||| ||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 585 TCCCCGTTGTCTTCCGAGGTCAACAGAGAAGTTCAGCCTGAGATTTCTGCGGATGACCGA 644
Query 644 GTCATTTTTCCAGAATCTCCTACAAGTGATCCAGTGATGAGCCAAGGAAGTGGTGCACGT 703
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 645 GTCATTTTTCCAGAATCTCCTACAAGTGATCCAGTGATGAGCCAAGGAACTGGTGCTCGT 704
Query 704 ATGGGACTTGACCTTAGAGATGTTGTTAGAGATTCTATGTATAGAGAAGCTAGAGGGCTT 763
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 705 GTGGGACTTGACCTTAGAGATGTTGTTAGAGATTCTATGTATAGAGAAGCTAGAGGGCTT 764
Query 764 TCTGAAGTATGTAGGCAAAACAGAAGAGAGGATTCTCCAAGACCCTATGGTTTGAAGCAA 823
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 765 TCTGATGTATGTAGGCAAAACAGAAGAGAGGATTCTCCAAGACCCTATGGTTTGAAGCAA 824
Query 824 TCCACGCCTGTCGATTTCAATGAGTCCTGCAGAGCTTTAGCCAAACTTAGAAAAACATCT 883
|||| |||||| ||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 825 TCCAGGCCTGTTGATTTCAATGAATCCTGCAGAGCTCTAGCCAAACTTAGAAAAACATCT 884
Query 884 CATCATTATTACAATGAGGTTGATATGAAAGATACATCCCGTTACTATGTTGATTCTCGC 943
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 885 CATCACTATTACAATGAGGTTGACATGAAAGATACATCCCGTTACTATGTTGATTCTCGC 944
Query 944 GGAAAGTCGAAATCCGGGAAGAAGCTCAAAGAGTTGCCTAGACTTTCGTTGGACAGTAGA 1003
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 945 GGAAAGTCGAAATCCGGGAAGAAGCTGAAAGAGTTGCCTAGGCTTTCGTTGGACAGTAGA 1004
Query 1004 GACCACGTTGATCTCAAACCAGGTAATTTGCTTTCTGAAAGTTTCAGTAGAAGCTCTAGT 1063
|||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1005 GACCACGTTGATCTCAAATCAGGTAATAAACTTTCTGAAAGTTTCAGTAGAAGCTCTAGC 1064
Query 1064 ATGAACAAAGTTTCAGGTAGCCCGAAACGGCCTCCTAGTGTTGTTGCGAAGCTAATGGGC 1123
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1065 ATGAACAAAGTTTCAGGTAGCCCGAAACGGCCTCCTAGTGTTGTTGCCAAGCTAATGGGC 1124
Query 1124 TTGGAAACATTACCAAGTTCTCCTTTGAACAGAGAAAAATTCAACATGTTTGATGATAAC 1183
|||||||||||||| |||||||||||| |||||| | ||||||||||||||||||||||
Sbjct 1125 TTGGAAACATTACCGGGTTCTCCTTTGAGCAGAGACAGATTCAACATGTTTGATGATAAC 1184
Query 1184 AGTGATCCATTCTCAAGATCATTGAGGGAAAATAGCCTGAACCGTTCTCTTCGGTTTTCT 1243
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1185 AGTGATCCATTCGCAAGATCATTGAGGGAAAATAGCCTGAACCGTTCTCTTCGGTTCTCT 1244
Query 1244 CCTAGCTCACCGAGAAGCTTAGGTAAGGACCCTACTGCTTCTTCTTCTTCTCCAAGATGG 1303
|||||||| || ||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 1245 CCTAGCTCGCCCAGAAGCTTAGGAAAGGACCCTGCTGCTTCTTCTTCTTCTCCAAGATGG 1304
Query 1304 AGAAGCTCTGAGTTTGTTATGAAACCCTTATCAAGTTTGAGATATCCCATTGAACCAGCT 1363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1305 AGAAGCTCTGAGTTTGTTATGAAACCCTTATCAAGTTTGAGATATCCCATTGAACCAGCT 1364
Query 1364 CCTTGGAAGCAAACTGATAGAAACCGGTTTTCTCAAAAGCAAGCCTGCTGGTCAGTGAAA 1423
|||||||||||||| || |||||||||||||||||||||||||||||| |||| ||||||
Sbjct 1365 CCTTGGAAGCAAACCGAGAGAAACCGGTTTTCTCAAAAGCAAGCCTGCAGGTCTGTGAAA 1424
Query 1424 TCTCTGTCCCAGTCAATGGAGGGAAGATTGAAAGATCTCGAGTTTAAACATTCGGGAAAG 1483
|||||||| ||||| |||||||||| |||||||||||| ||| |||||||||||||||||
Sbjct 1425 TCTCTGTCACAGTCGATGGAGGGAAAATTGAAAGATCTTGAGGTTAAACATTCGGGAAAG 1484
Query 1484 GATCTCAGAGCTCTTAAAGATATATTAGAGGCAATGCAATCAAAAGGTCTCTTTGATACT 1543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1485 GATCTCAGAGCTCTTAAAGATATATTAGAGGCAATGCAATCAAAAGGTCTCTTTGATACT 1544
Query 1544 CGAAAGCAACCACAATGCTCAAACTTGGAAGCTCAAAGAGATTACGAACTGGCAGATTCT 1603
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1545 CGAAAGCAACAACAATGCTCAAACTTGGAAGCTCAAAGAGATTACGAACTGGCAGATTCT 1604
Query 1604 GCAACTTCTAACCATGATTCAATGGACCTGCGAAACCCGGTGATGCCATCCAATATTAGA 1663
||||||||||| ||||||||||| |||||| ||||||||||||| ||||||||||| |||
Sbjct 1605 GCAACTTCTAAGCATGATTCAATAGACCTGAGAAACCCGGTGATTCCATCCAATATGAGA 1664
Query 1664 GGCCCAATTGTGATAATGAAACCTGCCAGACTTGTTGAAAAATCTGGTATCCCTTCATCA 1723
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1665 GGTCCAATTGTGATAATGAAACCTGCCAGACTTGTTGAAAAATCTGGTATCCCTTCATCA 1724
Query 1724 TCAT-TGATTCCCATTCATAGTCTATCCGGTCTTAACAAGACCTGCAGAGAAGAACCTGC 1782
|| | ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1725 TC-TCTGATTCCCATTCACAGTCTATCCGGTCTTAATAAGACCTGCAGAGAAGAACCTGT 1783
Query 1783 AAATGCTAGAAGAAGTTTAACAAGTAGAAAGGCAGCAAAAGATCGTAGTCCTGGAAACCA 1842
||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1784 AAATGTTAGAAGAAGTTCAACAAGTAGAAAGGCAGTAAAAGATCGTAGTCCTGGAAACCA 1843
Query 1843 AAGAGCTGAACCATGTATCAGTTCTAATAAGAAATCTAGCAGCAGAAACGTGAGGTCTTC 1902
||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||
Sbjct 1844 AAGAGCTGAACCATGTATCAGTTCTGACAAGAAATCTAGCAGCAGAAACGTGATGTCTTC 1903
Query 1903 TCAGGTTTCCAAAGAAAGCACTTCAAAGAATTCAGGACCTACAAGTCCAAAATTGCAGCA 1962
|||||||| ||||||||||||||||||||||||||| ||| ||||| |||| ||||||||
Sbjct 1904 TCAGGTTTACAAAGAAAGCACTTCAAAGAATTCAGGGCCTGCAAGTTCAAAGTTGCAGCA 1963
Query 1963 GATGAAGCATGAGCAAGACAAGCGTTCTCGGCCACCAGCCTCTCCATCTGATTCAAGCAA 2022
|||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1964 GATGAAGCCTGAGCATGACAAGCGTTCTCGACCACCAGCCTCTCCATCTGATTCAAGCAA 2023
Query 2023 ATTAAGAAAACAAATAAACCGACAACCCGTGGAATCTACTACTTCTCCTGGTGGTAGACG 2082
||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||
Sbjct 2024 ATTAAGAAAACAAATAAGCCGACAACCCGTGGAATCTACTACTTCTCCTGGTGGGAGGCG 2083
Query 2083 TAGTAGACCCAGGGATCAGAGGAGCTTGCAACAAAATGATGGCCAACTAAGTCAAATGAG 2142
|||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct 2084 TAGTAGACCCAGGGATCAGAGGAGCTTGCAGCAAAATGATGGCCAACTTAGCCAAATGAG 2143
Query 2143 CAATAAATCTAGTACTAAAACAGAAGCCCCCGTGAGTCTCGAAAATGGTGGAAAGAGTCC 2202
|||||||||||| ||||||| ||||||| || ||||| ||||||||||||||||||| ||
Sbjct 2144 CAATAAATCTAGGACTAAAATAGAAGCCACCTTGAGTATCGAAAATGGTGGAAAGAGCCC 2203
Query 2203 ATCTGTAATAGAGGCAGCCAAAGCTGTAGTCTCTAACTTAATACAGAATAAGTCCAGTCC 2262
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2204 ATCTGTTATAGAGGCAGCCAAAGCTGTAGTCTCTAACTTAATACAGAATAAGTCCAGTCC 2263
Query 2263 AACGTTTAGTGA---TGGATCATCAGAACATCCAAGTCCAGTTTCTGTTCTCAATGCAGA 2319
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2264 AACGTTTAGTGAAGATGGATCATCAGAACATCCAAGTCCAGTTTCTGTTCTCAATGCAGA 2323
Query 2320 AATCTACAGAGAGATCAAACCATCTCCTGTGAAAATCCAAGCTAGTGAAGGCAGTGTTAA 2379
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2324 AATCTACCGAGAGATCGAACCATCTCCTGTGAAAATCCAAGCTAGTGAAGGCAGTGTTAA 2383
Query 2380 TGGCCCTATTGACTTGGGTGTTGAACATTGCGAGGAGGACCAGTGGAATCCAGCTTATAG 2439
|||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2384 TGGCTCTATTAACTCGGGTGTTGAACATTGCGAGGAGGACCAGTGGAATCCAGCTTATAG 2443
Query 2440 CTTCTCAAAGACAACAACCAGCTTTTCGCCAGAGATGAACCGAAAGAAACTTCAGAATGT 2499
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 2444 CTTCTCAAAGACAACAACAAGCTTTTCGCCAGAGATGAACCGAAAGAAGCTTCAGAATGT 2503
Query 2500 TGAGCATTTGGTTCAAAAGCTAAGAAGACTAAACTCTAGCCATGACGAAACCAGTCAAGA 2559
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2504 TGAGCATTTGGTTCAAAAGCTAAAAAGACTAAACTCTAGCCATGACGAAACCAGTCAAGA 2563
Query 2560 TTACATTGCATCTTTATGCGAGAACAGTGATCCTAACACCGATCATAGATACATTTCCGA 2619
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 2564 TTACATTGCATCTTTATGCGAGAACAGTGATCCTGACACCGATCACAGATACATTTCCGA 2623
Query 2620 GATTCTTTTAGCCTCAGGTCTTCTCCTCAGAGATCTCGGCTCAGGATTAACAACTTTTCA 2679
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2624 GATTCTTTTAGCCTCGGGTCTTCTCCTCAGAGATCTTGGCTCAGGATTAACAACTTTTCA 2683
Query 2680 ACTGCACCCTTCAGGCCACCCAATCAATCCGGAGCTGTTCCTTGTTCTTGAGCAAACTAA 2739
|||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 2684 ACTGCACCCTTCAGGCCACCCAATTAATCCGGAGCTGTTCCTTGTGATTGAGCAAACTAA 2743
Query 2740 AGGATGCAGCAGCAGTAGCAGCAACGAAAAGCTCAACCGCAAACTTGTGTTTGATGCTGT 2799
|||||||||||| ||||||||| |||||| ||||||||||||||||||| ||||||||
Sbjct 2744 AGGATGCAGCAG---TAGCAGCAATGAAAAGATCAACCGCAAACTTGTGTTCGATGCTGT 2800
Query 2800 TAATGAAATGCTCGGGAAGAAGCTTCCTTTTGTTGAGAGCAATGTAGATCCATGGATGAA 2859
|||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 2801 TAATGAAATGCTCGGGAAGAAGCTAGCTTTTGTTGAGAGCTATGTAGATCCATGGATGAA 2860
Query 2860 GCAAGCGAAAACGAGGAAGAGGGTCTTAAGTGCACAAAATCTCTTGAAGGAACTATGTTC 2919
|||||| ||| |||| |||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 2861 GCAAGCTAAAGCGAGAAAGAAGGTCTTAAGTGCACAAAATCTGTTGAAGGAACTATGTTC 2920
Query 2920 TGAGATAGAGACACTACAAAAGCAAGCCaagaagagatcagaagacttgttg--g----a 2973
|||||||||| ||||||||||||||||||||||||||||||| |||||||| | |
Sbjct 2921 AGAGATAGAGATACTACAAAAGCAAGCCAAGAAGAGATCAGAAAACTTGTTGTTGTTGGA 2980
Query 2974 ggaagaagaagaagaaga------TTTCTTGAAATGTATATTGGATGAAGATATGGCAAT 3027
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2981 GGAAGAAGAAGAAGAAGAAGAAGATTTCTTGAAATGTATATTGGATGAAGATATGGCAAT 3040
Query 3028 CCGATCTGGGAAATGGACAGACTTTGATGATGCAATCCCTGGTGTAGTGCTTGACATGGA 3087
|| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 3041 CCAATCTGAGAAATGGACAGACTTTGATGATGCAATCCCTGGTTTAGTGCTTGACATGGA 3100
Query 3088 GAGGCTTCTCTTCAAAGACCTGGTGAATGAGATAGTGCACGGTGAGATTGGTCGGCTGCA 3147
|||||||||||||||||| |||||||| ||||| |||||||||||||||| |||||||||
Sbjct 3101 GAGGCTTCTCTTCAAAGATCTGGTGAAAGAGATTGTGCACGGTGAGATTGATCGGCTGCA 3160
Query 3148 AGGAAACTCAAGGAGACAGAAAACGGTTTTGGCTGACGAGTAGATATTGATTTATA 3203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3161 AGGAAACTCAAGGAGACAGAAAACGGTTTTGGCTGACGAGTAGATATTGATTTATA 3216
> AT1G74160.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G18620.1);
Has 3407 Blast hits to 2217 proteins in 314 species: Archae
- 0; Bacteria - 264; Metazoa - 1296; Fungi - 318; Plants -
346; Viruses - 34; Other Eukaryotes - 1149 (source: NCBI BLink).
| chr1:27886426-27891431 FORWARD LENGTH=4096
Length=4096
Score = 130 bits (70), Expect = 9e-29
Identities = 83/89 (93%), Gaps = 2/89 (2%)
Strand=Plus/Plus
Query 2187 ATGGTGG-AAAGAGTCCATCTGTAATAGAGGCAGCCAAAGCTGTAGTCTCTAACTTAATA 2245
||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2774 ATGGTGGTAAA-AGTCCATCTGTAATCGAGGCAGCCAAAGCTGTAGTCTCTAACTTAATG 2832
Query 2246 CAGAATAAGTCCAGTCCAACGTTTAGTGA 2274
|||||||| |||||||||| |||||||||
Sbjct 2833 CAGAATAAATCCAGTCCAAGGTTTAGTGA 2861
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 163945569724
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5