BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472085
Length=1176
Score E
Sequences producing significant alignments: (Bits) Value
AT1G18640.2 | Symbols: PSP | 3-phosphoserine phosphatase | chr1... 1733 0.0
AT1G18630.1 | Symbols: GR-RBP6 | glycine-rich RNA-binding prote... 134 3e-30
> AT1G18640.2 | Symbols: PSP | 3-phosphoserine phosphatase | chr1:6416357-6418690
REVERSE LENGTH=1198
Length=1198
Score = 1733 bits (938), Expect = 0.0
Identities = 1107/1186 (93%), Gaps = 22/1186 (2%)
Strand=Plus/Plus
Query 1 TTCACCAACCAAAC-AACACTCTTCTCAGTGACttttttttttATTGATC-GATCATCCA 58
|||||||||| ||| |||||||||||||||| |||||||||| ||||||| |||| |||
Sbjct 4 TTCACCAACC-AACAAACACTCTTCTCAGTGGCTTTTTTTTTAATTGATCGGATCCTCC- 61
Query 59 AAGCAGCAGCCGAAGACGACCGCCGGCGATTTTTCCGGTTGGTAATTGTTCTCGTCTGAT 118
||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||
Sbjct 62 AAGCAGCAGCCGAAGACGACCGCCGGCGA--TTTCCGGTTGGCAATTGTTCTCATCTGAT 119
Query 119 CT-TTTTCCTCACGCTCC-TGTTTAAATGGAAGCAATAGCTACTTCAAGGGTTGTGCCAG 176
|| ||| ||| |||||| |||| |||||||||| || |||||||||||||||||||||
Sbjct 120 CTGCTTT-CTCGCGCTCCAAGTTT-AATGGAAGCATTAACTACTTCAAGGGTTGTGCCAG 177
Query 177 TTCAGCTTCCTTGTAGAAGAAAGCTCTCTTCACTTTTTGCTAATTCGTCTTGCATTGAGT 236
||||| | || ||| |||||||||||||||||||||||||||| |||||| ||||||
Sbjct 178 TTCAGGTCCCCTGT---AGAAAGCTCTCTTCACTTTTTGCTAATTTTTCTTGCCTTGAGT 234
Query 237 TAAGGAGATATCCTTGTAGAGGTCTTGTCTCGATCATGCACCATCCCAAATTGCTTCGTC 296
||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||
Sbjct 235 TAAGGAGATATCCTTGTAGAGGTCTTGTCTCCATTATGAACCATCCCAAATTGCTTCGTC 294
Query 297 CAGTGACTGCTTCTGTGCAGCCACAAGAGTTGTCGGCTTTGGGGCACGAAAGCAACGTTG 356
|||||||||||||||||||||| || ||||||||| |||||||||| ||| ||||| |||
Sbjct 295 CAGTGACTGCTTCTGTGCAGCCTCACGAGTTGTCGACTTTGGGGCATGAAGGCAACATTG 354
Query 357 TTCCTTCTAAAGAAATTCTTGATCTTTGGCGAAGTGTTGAAGCGGTATGTTTCGATGTGG 416
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 355 TTCCTTCTAAAGAAATTCTTGATCTTTGGAGAAGTGTTGAAGCGGTATGTTTCGATGTGG 414
Query 417 ATAGCACGGTTTGTGTCGATGAAGGTATTGATGAACTTGCTGAGTTTTGTGGAGCTGGAA 476
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 ACAGCACGGTTTGTGTGGATGAAGGTATTGATGAACTTGCTGAGTTTTGTGGAGCTGGAA 474
Query 477 AGGCTGTTGCTGAATGGACTGCCAGAGCAATGGGTGGATCTGTTCCATTTGAAGAAGCTC 536
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 475 AGGCTGTTGCTGAATGGACTGCCAGAGCTATGGGTGGATCTGTTCCATTTGAAGAAGCTC 534
Query 537 TAGCCGCAAGACTCTCTTTGTTCAAGCCTTCTCTTTCAAAAGTTGAGGAATATCTCGAAA 596
|||| |||||||| ||||| ||||||||||||||||||||||| |||||||||||||| |
Sbjct 535 TAGCTGCAAGACTTTCTTTATTCAAGCCTTCTCTTTCAAAAGTAGAGGAATATCTCGACA 594
Query 597 AGAGACCCCCGAGGCTATCCCCTGGCATTGAAGAGTTGGTCAAGAAACTCAGAGCCAATA 656
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 595 AGAGACCCCCAAGGCTATCTCCTGGCATTGAAGAGTTGGTCAAGAAACTCAGAGCCAATA 654
Query 657 ATATTGATATCTATTTGATATCTGGAGGTTTTCGACAGATGATCAATCCTGTAGCATCGA 716
| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 ACATTGATGTCTATTTGATATCTGGAGGTTTTCGACAGATGATCAATCCTGTAGCATCGA 714
Query 717 TTCTCGGCATCCCTCGAGAGAATATCTTTGCTAACAATCTTCTATTTGGAAACTCCGGCG 776
|||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 715 TTCTTGGCATCCCTCGGGAGAATATCTTTGCCAACAATCTTCTATTTGGAAACTCCGGCG 774
Query 777 AGTTTCTCGGCTTTGATGAGAACGAACCTACATCAAGAAGTGGAGGCAAAGCCAAAGCAG 836
||||||| || |||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 775 AGTTTCTGGGATTTGATGAGAACGAACCTACGTCAAGAAGTGGAGGCAAAGCCAAGGCAG 834
Query 837 TGCAACAAATACGAAAGGGTCGCCTCTACAAGACTATGGCCATGATTGGAGATGGTGCTA 896
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 835 TGCAACAAATACGAAAGGGTCGTCTCTACAAGACTATGGCCATGATTGGAGATGGTGCTA 894
Query 897 CTGATCTAGAAGCACGCAAACCTGGTGGCGCAGACTTGTTCATATGCTATGCCGGAGTTC 956
||||||| |||||||| ||||||||||||||||| |||||||||||||| || |||||||
Sbjct 895 CTGATCTCGAAGCACGTAAACCTGGTGGCGCAGATTTGTTCATATGCTACGCTGGAGTTC 954
Query 957 AGCTTCGTGAAGATGTTGCAGCAAAAGCAGACTGGCTTATCCTTAAGTTTGAATCTCTCA 1016
|||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 955 AGCTTCGTGAAGCCGTTGCAGCAAATGCAGACTGGCTTATCTTTAAGTTTGAATCTCTCA 1014
Query 1017 TAAACTCATTGGACTAAAAG-----ATAGTGATTATTCTCGTTTAGCTAAACTCATTATT 1071
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1015 TAAACTCATTGGACTAAAAGCCTCTATAGTGATTATTCTCGTTTAGCTAAACTCATTATT 1074
Query 1072 CATATCTCCAAATTTGTACCCtttttttATGAATTTGTATGAAATACCA-TTGAATCAAC 1130
||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||
Sbjct 1075 CATATCTCCAAATTTGTACCCTTTT---ATGAATTTGTATCAAATACCAATTGAATCAAC 1131
Query 1131 AAATGTTTTTGCCAACTTTAGCCGCTTGATATGTTTGTTCAAACAT 1176
|||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1132 AAATGTTTTTGCCAACTTTAGCCGCTTGATATGTTTGTTCAAGCAT 1177
> AT1G18630.1 | Symbols: GR-RBP6 | glycine-rich RNA-binding protein
6 | chr1:6414725-6416459 FORWARD LENGTH=751
Length=751
Score = 134 bits (72), Expect = 3e-30
Identities = 79/82 (96%), Gaps = 1/82 (1%)
Strand=Plus/Minus
Query 1096 ttttATGAATTTGTATGAAATACC-ATTGAATCAACAAATGTTTTTGCCAACTTTAGCCG 1154
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 751 TTTTATGAATTTGTATCAAATACCAATTGAATCAACAAATGTTTTTGCCAACTTTAGCCG 692
Query 1155 CTTGATATGTTTGTTCAAACAT 1176
|||||||||||||||||| |||
Sbjct 691 CTTGATATGTTTGTTCAAGCAT 670
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57730626750
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5