BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472088
Length=1923
Score E
Sequences producing significant alignments: (Bits) Value
AT1G18660.4 | Symbols: | zinc finger (C3HC4-type RING finger) ... 2638 0.0
> AT1G18660.4 | Symbols: | zinc finger (C3HC4-type RING finger)
family protein | chr1:6421117-6425880 FORWARD LENGTH=2089
Length=2089
Score = 2638 bits (1428), Expect = 0.0
Identities = 1556/1616 (96%), Gaps = 15/1616 (1%)
Strand=Plus/Plus
Query 1 TGTTCCGACCCAAAAATC----AG--GAAGAAGAAGATTGGCAAACAAAAAGGATTCACC 54
|||||||||| ||||||| || |||||||||||||| |||||||||||||||||||
Sbjct 10 TGTTCCGACCGAAAAATCAGGAAGAAGAAGAAGAAGATTGACAAACAAAAAGGATTCACC 69
Query 55 TTTAGTGACTGAGCTgagagagagagaTTGAA-G---aaaaaaaaaaaGAGTGAAGC-TT 109
||||||||||||| ||||||| |||||||||| | |||||||||||| ||||||| ||
Sbjct 70 TTTAGTGACTGAG-TGAGAGAAAGAGATTGAAGGAAAAAAAAAAAAAAGGGTGAAGCTTT 128
Query 110 GGAGAGAGAATAACCACGTAGAGGTTTATAATCCGTGGTTGCAAACCAAGGACCCAGAAT 169
|||||||| ||||||||||||||| || |||||||||||||||||| |||||||||||||
Sbjct 129 GGAGAGAGGATAACCACGTAGAGGATTCTAATCCGTGGTTGCAAACGAAGGACCCAGAAT 188
Query 170 TTCTGGAATTTCTTCCGTT-GATCG-ATCACTCAGATGTCGAACGAAGAATCTCTTCCGG 227
||||||||| |||| | || ||||| ||||||| ||||| |||||||| |||||||||
Sbjct 189 TTCTGGAATCTCTTGC-TTCGATCGAATCACTCTCATGTCTAACGAAGACTCTCTTCCGC 247
Query 228 CATTCACTTTGTTTGGTTTGGATGATGTCGAAAATTACGGTCTGGTCACTGAAGCAGACA 287
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 248 CTTTCACTTTGTTTGGTTTGGATGATGTCGAAAATTACGGTCTGGTCACTGAAGCAGACA 307
Query 288 ATTCGTTACCTTTAGATATACACAATCAGGTTTTTCAACTTGTGGAGAAGGGAAACCAAT 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 308 ATTCGTTACCTTTAGATATACACAATCAGGTTTTTCAACTTGTGGAGAAGGGAAACCAAT 367
Query 348 CATTCAAAGAGTCTCGCTTTGAAGAGGCAATTAGCAGTTATTCAAAGGCCAATTCTATTA 407
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 368 CATTCAAAGAGTCTCGCTTTGAAGAGGCTATTAGCAGTTATTCAAAGGCCAATTCTATTA 427
Query 408 AACCTCTTGACCCTATTGTTCTTGGCAATAGAAGTGCTGCTTATATTAGATTTGGCCAAT 467
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 428 AACCTCTTGACCCTATTGTTCTTGGCAATAGAAGTGCTGCTTATATAAGATTTGGCCAAT 487
Query 468 ATCTGAAGCAGAGATCTGCATCAATTTCTGAATATAAACCTCTGAATGGTTTTGATATGT 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 488 ATCTGAAGCAGAGATCTGCATCAATTTCTGAATATAAACCTCTGAATGGTTTTGATATGT 547
Query 528 CGATGCTTGGGGAACTTGCTCTTAAGGATGCTGATAAGCTGATGAATCTTCAAAGCAGTT 587
|||||||||| ||||||||||||||||||||||||||||| |||| |||||| |||||||
Sbjct 548 CGATGCTTGGTGAACTTGCTCTTAAGGATGCTGATAAGCTAATGAGTCTTCAGAGCAGTT 607
Query 588 CAGTGAAGTCATATACTACAAAGGCTTGTGCCCTCATGTTGCTAGAAAGATATGAGGTAG 647
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 608 TAGTGAAGTCATATATTACAAAGGCTTGTGCCCTCATGTTGCTAGAAAGATATGAGGTAG 667
Query 648 CACGTGACACTATCCTCTCAGGTCTACAGATTGATCCCTTTAGCGATCCTCTCCGATCCA 707
| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 668 CCCGTGACACTATCCTCTCAGGTCTACAGATTGATCCCTTTAGCGGTCCTCTACGATCCA 727
Query 708 ATCTTCAGGAATTGGAGAAAGTGATGCCTAATTCGATGCGTAAAACCCATGGAAAGGCTG 767
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 728 ATCTTCAGGAATTGGAGAAAGTGATGCCTAATTCGATGCGTAAAACCCATGGAATGGCTG 787
Query 768 AGCGGTCTGATGACTTTGATTGCACTGTTTGCCTGAAATTGCTGTATGAACCTGCTACAA 827
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 788 AGCGGTCTGATGATTTTGATTGCACTGTTTGCCTGAAATTGCTGTACGAACCTGCTACAA 847
Query 828 CCCCATGTGGGCATACATTCTGCCGATCCTGCCTCTTTCAGTCAATGGATCGCGGCAACA 887
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 848 CTCCATGTGGGCATACATTCTGCCGATCATGCCTCTTTCAGTCAATGGATCGCGGCAACA 907
Query 888 AATGTCCACTATGTCGAACTGTCATTTTTATGACTCCAAGAACATGCGCTGTCAGTGTGA 947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 908 AATGTCCACTATGTCGAACTGTCATTTTTATGACTCCAAGAACATGCGCTGTCAGTGTGA 967
Query 948 CACTGAATAACATCATACAGAAAAACTTTCCAGAGGAGTATGCTGAAAGGAAATCAGAGC 1007
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 968 CACTGAATAACATCATAGAGAAAAACTTTCCAGAGGAGTATGCTGAAAGGAAATCAGAGC 1027
Query 1008 AAGACACTCTGGTCCACTTAGGCAATGAAAGTATGCCCCTTTTCGTCATGGATGTGATCA 1067
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 1028 AAGACACTCTGGTCCACCTAGGCAATGAAAGTATGCCCCTTTTCGTCATGGATGTGATAA 1087
Query 1068 TCCCCTGTCAAAAGTTGTCTCTTCACATATTTGAACCACGATATCGACTAATGGTGAGAA 1127
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1088 TCCCCTGTCAGAAGTTGTCTCTTCATATATTTGAACCACGATATCGACTAATGGTGAGAA 1147
Query 1128 GAATAATGGAAGGAAATCATCGGATGGGAATGGTAGCTCTTGATTCTGCGACAGGTTCTC 1187
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1148 GAATAATGGAAGGAAATCATCGGATGGGAATGGTAGCTCTTGATTCGGCGACAGGTTCTC 1207
Query 1188 CAGTGGATGTTGCTTGCGAAGTTGAAATCACAGAGTGTGATCCACTCCCGGATGGACGTT 1247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1208 CAGTGGATGTTGCTTGCGAAGTTGAAATCACAGAGTGTGATCCACTCCCGGATGGACGTT 1267
Query 1248 TTGTCTTGGAGCTGGAAAGCCATAGAAGGTGCCGCATTGTAAAAGCTTGGGATCAAGATG 1307
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1268 TTGTCCTGGAGCTGGAAAGCCATAGAAGGTGCCGCATTGTAAAAGCTTGGGATCAAGATG 1327
Query 1308 GGTATCGTGTTGCAGAGGTTGAATGGGTGACAGATATACCACCACAAAGCGAGCAAGGGA 1367
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1328 GATATCGTGTTGCAGAGGTTGAATGGGTGAAAGATATACCACCACAAAGCGAGCAAGGGA 1387
Query 1368 AAGCAGATCTGCGGGAACTGACGACCAGCGCAGCATCATTTGCTCGGTCATGGCTAGATA 1427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1388 AAGCAGATCTGCGGGAACTGACGACCAGCGCAGCATCATTTGCTCGGTCATGGCTAGATA 1447
Query 1428 GAGCAAAGGAAGCAGCTAGACAAGGAGACAGAAGAAGACTTGAATTACTTCTAAATGTTG 1487
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1448 GAGCAAAGGAAGCAGCTAGACAAGGAGACAGAAGAAGACTTGAAATACTTCTAAATGTTG 1507
Query 1488 AATCTATGATACCAACGCCTCAAGATCCCGAACGCTTCAGTTTCTGGCTTGCCACATTGA 1547
||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||
Sbjct 1508 AATCTATGATACCAACGCCTCAAGATCCCGAGCGCTTCAGTTTCTGGCTTGCTACACTGA 1567
Query 1548 CAGATAGGAGACCTTCAGAAAGATTGGAACTACTTCGGCTTCAGGATACTGGAGAG 1603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1568 CAGATAGGAGACCTTCAGAAAGATTGGAACTACTTCGGCTTCAGGATACTGGAGAG 1623
Score = 468 bits (253), Expect = 1e-130
Identities = 306/330 (93%), Gaps = 10/330 (3%)
Strand=Plus/Plus
Query 1603 GTTTTACCAGTCCTTTTCTTTTGATTATTGAAAC-TTGTTGTTGCAGAGAATAAAGCGCG 1661
|||| |||||||| |||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 1668 GTTTCACCAGTCCCTTTCTTTTGATTGTTGAAACTTTGTTGTTGCAGAGAATAAAGCGCG 1727
Query 1662 GGTTGATATATCTCCGATCAGTAGAAAGAGGATGCAGAATGCAATGAACTGGCATCATCA 1721
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 1728 GGTTGATATATCTCCGATCAGTAGAAAGAGGATGCAGAATGCAATGAACTGGCAGCATGA 1787
Query 1722 GGGCATTGTATTGCCGATTGAACTACAGAGATAAAC-T------TGTTCATAAGAAGGTT 1774
||||||||||||||| || |||||||||||||||| | ||||||||||||||||
Sbjct 1788 TGGCATTGTATTGCCGGTTAAACTACAGAGATAAACTTGGGACCTGTTCATAAGAAGGTT 1847
Query 1775 GACAAAAACA-TTATTCATGATTAAAGGAATACATAAGATAGAGATCCATGTAGGATCGC 1833
||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1848 GAC-AAAACATTTATTCATGATTAAAGGAATACATAAGATAGAGATCCTTGTAGGATCGC 1906
Query 1834 TATCATCCTTTGTCGGATCCATTGTTGTAGATTTTGTTTGCGAGTGTATTTTACTTAATT 1893
| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 1907 TGTCATCCTTTGTCGGATCCATTGTTGTAGATTTTGTTTGCGACTGTATTTTATTTAATT 1966
Query 1894 ACCATATTCTTCATGATGCAACTGCAGCAA 1923
|||||||||||||| ||||||||| |||||
Sbjct 1967 ACCATATTCTTCATTATGCAACTGTAGCAA 1996
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95230433865
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5