BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472093
Length=2297
Score E
Sequences producing significant alignments: (Bits) Value
AT1G18700.4 | Symbols: | DNAJ heat shock N-terminal domain-con... 3275 0.0
> AT1G18700.4 | Symbols: | DNAJ heat shock N-terminal domain-containing
protein | chr1:6437477-6443171 FORWARD LENGTH=2387
Length=2387
Score = 3275 bits (1773), Expect = 0.0
Identities = 1934/2012 (96%), Gaps = 9/2012 (0%)
Strand=Plus/Plus
Query 184 GTTTTGGGTGTGAAGATGTACAGTTCAGTGGATGACGTGAAAGATGCGTA-CGAGACTAT 242
||||||||||| ||||||||||| |||||||||||||||||||||||||| | ||||| |
Sbjct 298 GTTTTGGGTGTAAAGATGTACAGCTCAGTGGATGACGTGAAAGATGCGTATC-AGACTGT 356
Query 243 TGCTTCTAAGTGGGATTCAGATTCAGGAGATTCTCTTCCAGCTGATTTTATTAAGATACA 302
|||||||||||||||||| | |||||||| ||||||||||||||||||| ||||||||||
Sbjct 357 TGCTTCTAAGTGGGATTCGGGTTCAGGAGTTTCTCTTCCAGCTGATTTTGTTAAGATACA 416
Query 303 ATACGCATATGAGCTGTTGACAAATATAGTATGGAAAAGGGACTATGACCTATACGGCAT 362
|||||| ||||||||||| |||||| ||||||||||||||||||||||| |||||| |||
Sbjct 417 ATACGCCTATGAGCTGTTAACAAATCTAGTATGGAAAAGGGACTATGACTTATACGCCAT 476
Query 363 TGATGAATCAGTACATATTATAGAGGAACTTGAAAAACAATATGCTGTGGAAGATTTTGC 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 TGATGAATCAGTACATATTATAGAGGAACTTGAAAAACAATATGCTGTGGAAGATTTTGC 536
Query 423 GAAAATAAAACTTCCCCTGCTGGAAGTTGTTTCTTATGAGCCTGAACGTGAAGGTTTTAT 482
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 537 AAAAATAAAACTTCCCCTACTGGAAGTTGTTTCTTATGAGCCTGAACGTGAAGGTTTTAT 596
Query 483 GTCAATTACGTCTCAAGACTTTGCGTCCAAGTTCCAAGATTCTAAGCCATGGCTCATTCA 542
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 GTCAATAACATCTCAAGACTTTGCGTCCAAGTTCCAAGATTCTAAGCCATGGCTCATTCA 656
Query 543 GGTGTATTCTTCTGGTAGCAAAAGCTCTGCCCATTTCACTACGGCTTGGAGAAGGATTGC 602
||||||||||||||||||||| ||||||||||| ||| |||||| |||||||||||||
Sbjct 657 GGTGTATTCTTCTGGTAGCAACAGCTCTGCCCAGTTCGCTACGGTTTGGAGAAGGATT-- 714
Query 603 AGTTGCTTTGTTGGATGGGGTTGCTAACCATGCGATGTTAGAGCTTGGCGATGTTCAACT 662
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 -GTTGCTTTGTTGGATGGGGTTGCTAACCATGCGATGTTAGAGCTTGGCGATGTTCAACT 773
Query 663 TGTGACCTACCTTGCTGAGAAAAAACCAACAGGACAAGTATTTTTTAGAAAAGGCCTTCC 722
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 774 TGTGACCTACCTTGCTGAGAAAAAACCAACAGGACAAGTATTTTTCAGAAAAGGCCTTCC 833
Query 723 TTCAATCCTCTCTTTCCCCCCGAATTGCAAAACCGCAGACTGCCTCATCAGGTTTGAAGG 782
||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 834 TTCAATCTTCTCTTTCCCCCCAAATTGTAAAACCGCAGACTGCCTCATCAGGTTTGAAGG 893
Query 783 AGAGCTGTCAGCAGATGCAATTACCGATTGGTTCGCGACCACTGTACTGGGTTTACCTAG 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 AGAGCTGTCAGCAGATGCAATTACCGATTGGTTCGCGACCACTGTACTGGGTTTACCTAG 953
Query 843 AGTATTCTATCACACAAAAGAAACACTGGTACCCAAGTTCCTCTCCAAAGTACCACCTAA 902
||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||
Sbjct 954 AGTATTCTATCACACAAAAGAAACACTGGTATCTAAGTTCCTCTCCAAAGTTCCACCTAA 1013
Query 903 TAAGGTGAAAGTCATTTTATTCTCACAAACAGGAGAGCGAGCTACTCCTATTGTTCGCCA 962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 TAAGGTGAAAGTCATTTTATTCTCACAAACAGGAGAGCGAGCTACTCCTATTGTTCGCCA 1073
Query 963 AGCTGCAAAAGATTATTGGAATTTTGCTTCTCTATCTCACGTGCTTTGGAGAGAAGAGGA 1022
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1074 GGCTGCCAAAGATTATTGGAATTTTGCCTCTCTATCTCACGTGCTTTGGAGAGAAGAGGA 1133
Query 1023 TGCATCTTTCTGGTGGAATGCGTTGGAGGTAGAATCTGCACCTGCCATTGTGATTATGAA 1082
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 TGCATCTTTCTGGTGGAATGCGTTGGAGGTAGAATCTGCACCTGCCATTGTGATTATGAA 1193
Query 1083 GGATCCGGGTTCAAAACCTGTTGTTTATCATGGATCTGGCAACCGTACATGGTTCCTGGA 1142
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1194 GGATCCTGGTTCAAAACCTGTTGTTTATCATGGATCTGGCAACCGTACATGGTTCCTGGA 1253
Query 1143 CATTTTGGAGCAGAACAAGCAATTACAGCTTCCTCAACTAAGAAGCACAACATCAATGGA 1202
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1254 CATTTTGGAGCAGAACAAGCAATTACTGCTTCCTCAACTAAGAAGCACAACATCAATGGA 1313
Query 1203 ACTTGGTTGTGATGCACGGGGATACTCTCGAGCTGGTTATGATAAAGCGACGTGGTACTG 1262
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1314 ACTTGGTTGTGATGCACGGGGATACTCTCGAGCTGGTTATGATAAAGTGACGTGGTACTG 1373
Query 1263 TGCCATCCTTGTTGGAAGACAAAGCGTGGAACTCAATAAGATGAGGGAAACCATGTGCAG 1322
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1374 TGCCATCCTTGTTGGAAGACAAAGCGTTGAACTCAATAAGATGAGGGAAACCATGTGCAG 1433
Query 1323 GGTACAAGATGCTTTGTCAAAGTATGATGAATCAGATGAGGCTTCCAAGGATCCATTAAT 1382
||||||||||||||||||||||||||| || |||||||| |||||||||||||||| |||
Sbjct 1434 GGTACAAGATGCTTTGTCAAAGTATGACGATTCAGATGACGCTTCCAAGGATCCATCAAT 1493
Query 1383 AACTCCAGCAGCTTCTGCACACAAAACCAAGCGACTATCATTTGCGTGGCTTGACGGAGA 1442
||| |||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||
Sbjct 1494 AACGCCAGCAGCTTCTGCACACAAAAGCAAGCGACTCTCATTTGCGTGGCTCGACGGAGA 1553
Query 1443 AGCGCAGAATAAATACTGTTTCTTCTATGTTCAATCGGAAACCAGCTATGACACGTGTGG 1502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1554 AGCGCAGAATAAATACTGTTTCTTCTATGTTCAATCGGAAACCAGCTATGACACGTGTGG 1613
Query 1503 AACTAGGAGGGCACCAATTGATGTGCCTAGGATATTGATCGTTCGGTACCATAGAAATGC 1562
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1614 AACTAGGAGGGCACCGATTGATGTCCCTAGGATATTGATCGTTCGGTACCATAGAAATGC 1673
Query 1563 TACAGAAACTGCTAATGTAGAGCAGAAATCAAGTAAATGGCCCAAAACTGTATGGCAATC 1622
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 1674 TACAGAAACTGCTAATGCAGAGCAAAAATCAAGTAAATGGCCCAAAACTGTATGGCAATC 1733
Query 1623 TGAAGCTGATGATGTTGATCCCGCTGCACAACTTGTTGTTAGTTACGACGGACCAGCTGA 1682
||||||||| ||||||||||| |||||||| |||||||||||||| |||||| |||||||
Sbjct 1734 TGAAGCTGACGATGTTGATCCTGCTGCACAGCTTGTTGTTAGTTATGACGGAACAGCTGA 1793
Query 1683 AACTCCCGAGATCATCAAGTGGCTATCGAAAATGGTTGATGATGGTGACAACAGAAACCT 1742
|| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1794 AATTCCCCAGATCATTAAGTGGCTATCGAAAATGGTTGATGATGGTGACAACAGAAACCT 1853
Query 1743 ACCTTTCTATAGAGCTAAAACTCCAGAACTTGTTCCTGAAAGCGCTGAACCAATGAGATC 1802
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1854 ACCTTTCTATAGAGCTAAAACTCCAGAACTTGTTCCAGAAAGCGCTGAACCGATGAGATC 1913
Query 1803 AGGAGTCCCAAAAAGCGTAAAAGCAACTCAGAAATTGTTGAGCTTATGGAACAGAATCAA 1862
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1914 AGGAGTCCCAAAGACCGTAAAAGCAACTCAGAAATTGTTGAGCTTATGGAACAGAATCAA 1973
Query 1863 AGACTACCTAGCTGATCCAAGAATGGGACCTACATTGCTTCTAGGAGCTTTGTTATCTGC 1922
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1974 AGACTACCTAGCTGATCCAAGAATGGGGCCTACATTGCTTCTAGGAGCGTTGTTATCTGC 2033
Query 1923 AGGCAATGTTTGGTGGATGAGAAGCCGATCATCAACACTACAACCTGCTCAGACAAATCA 1982
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2034 AGGCAATGTTTGGTGGATGAGAAGCCGATCATCAACACAACAACCTGCTCAGACAAATCA 2093
Query 1983 GCCATCACCAAATCAACCAGATGATAACGTggaggagaataagaagaaagagagaaagag 2042
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 2094 GCCATCACCAAATCAACCAGCCGATAACGTGGAGGAGAAGAAGAAGAAAGAGAGAAAGAG 2153
Query 2043 agaacaacgaagaaggaatgcaaaggaaaaagaggTTCCTGCTTCAATCACTGATAACGA 2102
|||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 2154 AGAACAACGAAGGAGGAATGCAAAGGAAGAAGAGGTTCCTGCTTCGATCACTGATAACGA 2213
Query 2103 ACCTAAAGATGCTGTCCAAATTCTATCTTCAGGTTCCGATTCTGACTAATATTATTAACC 2162
|||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
Sbjct 2214 ACCTAAAGATGCTGTCCAAATTCTGTCTTCAGGTTCCGATTCTGACTAATAT-ATTAAGC 2272
Query 2163 CTTAGGATTCTTCTGACCttt-ttgttttttt 2193
||||||||||||||||| ||| || |||||||
Sbjct 2273 CTTAGGATTCTTCTGAC-TTTCTT-TTTTTTT 2302
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 114005437695
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5