BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472098
Length=659
Score E
Sequences producing significant alignments: (Bits) Value
AT1G18730.1 | Symbols: NDF6 | NDH dependent flow 6 | chr1:64605... 1000 0.0
AT1G18735.1 | Symbols: | other RNA | chr1:6461232-6461752 REVE... 122 3e-27
> AT1G18730.1 | Symbols: NDF6 | NDH dependent flow 6 | chr1:6460598-6462224
FORWARD LENGTH=672
Length=672
Score = 1000 bits (541), Expect = 0.0
Identities = 605/636 (95%), Gaps = 4/636 (1%)
Strand=Plus/Plus
Query 1 CTCCACTGACACCATCAAGAAGTAACAATGGCTGAAGCTTTCACAAGTTCCACCTTCACA 60
||||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1 CTCCATTGCCACCATCAAGAAGTAACAATGGCTGAAGCTTTCACAAGTTTCACCTTCACA 60
Query 61 AATCTTCATATCCCTTCTTCCTCCAGTCACTCGCCTAAGCAGATTTCAGGACCAAATCAT 120
||||||||||| |||||||||| || ||||||||| ||||||| ||||||||| ||||||
Sbjct 61 AATCTTCATATTCCTTCTTCCTACAATCACTCGCCGAAGCAGAATTCAGGACCGAATCAT 120
Query 121 GGATATTGGCTATCTATGAAAGTTAATGAGAAGAGGGAAAAGAATTTGATGAGAGGAAGA 180
|||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 121 GGATATTGGCTATCTAAGAATGTTAATGAGAAGAGGGAAAGGAATTTGATGAGAGGAAGC 180
Query 181 TTATGTGTAAGAAAGGCATTGCCACATGATTTGCCATTAATGGCAGTGATGGTTCAACAA 240
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 181 TTATGTGTAAGAAAGGCATTGCCACATGATTTGCCATTAATGGCTGTGATGGTTCAACAA 240
Query 241 ATAGAAGGAATGCGTGATATCATTACAGAGAAACACGTGTGGCATCTAAGTGATAAAGCT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ATAGAAGGAATGCGTGATATCATTACAGAGAAACACGTGTGGCATCTAAGTGATAAAGCT 300
Query 301 ATCAAGAATGTCTATATGTTCTACATCATGTTCACTTGTTGGGGATGTTTGTACTTCGGT 360
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATCAAGAATGTTTATATGTTCTACATCATGTTCACTTGTTGGGGATGTTTGTACTTCGGT 360
Query 361 TCCGCAAAAGATCCATTCTATGACTCGGAGGAGTACCGTGGAGATGGAGGGGATGGAACT 420
|| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 361 TCAGCAAAAGATCCATTCTACGACTCAGAGGAGTACCGTGGAGATGGAGGGGATGGAACT 420
Query 421 GGATATTGGGTCTATGAAACTCAAGAAGACATAGAAGAGAAAGCAAGAGCAGAGCTATGG 480
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 421 GGATATTGGGTCTATGAAACTCAAGAAGACATAGAAGAGAAAGCAAGAGCGGAGCTATGG 480
Query 481 CGTGAAGAACTTATTGAAGAAATTGAACAGAAAGTTGGTGGCTTAAGAGAGCTTGAAGAA 540
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 481 CGTGAAGAACTTATCGAAGAAATTGAACAGAAGGTTGGTGGCTTAAGAGAGCTTGAAGAA 540
Query 541 GCTGTTACTAAGTAGAAAACTAACTTGTAAATCATAAATCTAATTCACATACACAT-ATA 599
|||||||||||||||||||||||||||| ||||||||| | | || |||||||||| |||
Sbjct 541 GCTGTTACTAAGTAGAAAACTAACTTGTGAATCATAAACC-ACTTTACATACACATTATA 599
Query 600 T-TTTGTCTTATATGAGTCATACAACATtatatata 634
| ||| |||||||| |||||| ||||||||||||||
Sbjct 600 TATTT-TCTTATATCAGTCATGCAACATTATATATA 634
> AT1G18735.1 | Symbols: | other RNA | chr1:6461232-6461752 REVERSE
LENGTH=442
Length=442
Score = 122 bits (66), Expect = 3e-27
Identities = 70/72 (97%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 370 GATCCATTCTATGACTCGGAGGAGTACCGTGGAGATGGAGGGGATGGAACTGGATATTGG 429
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 GATCCATTCTACGACTCAGAGGAGTACCGTGGAGATGGAGGGGATGGAACTGGATATTGG 297
Query 430 GTCTATGAAACT 441
||||||||||||
Sbjct 296 GTCTATGAAACT 285
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31848449198
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5