BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472101
Length=1152
Score E
Sequences producing significant alignments: (Bits) Value
AT1G18750.1 | Symbols: AGL65 | AGAMOUS-like 65 | chr1:6466761-6... 1919 0.0
> AT1G18750.1 | Symbols: AGL65 | AGAMOUS-like 65 | chr1:6466761-6469640
FORWARD LENGTH=1582
Length=1582
Score = 1919 bits (1039), Expect = 0.0
Identities = 1126/1166 (97%), Gaps = 14/1166 (1%)
Strand=Plus/Plus
Query 1 ATGGGTAGGGTTAAGTTGAAGATTAAAAGACTTGAGAGCACAAGCAACAGGCAAGTTACA 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 ATGGGAAGGGTTAAGTTGAAGATTAAAAGACTTGAGAGCACAAGCAACAGGCAAGTTACA 472
Query 61 TACACGAAGAGAAAAAATGGGATATTGAAGAAAGCCAAAGAGTTATCGATTTTGTGTGAT 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 473 TACACGAAGAGAAAAAATGGGATTTTGAAGAAAGCCAAAGAGTTATCGATTTTGTGTGAT 532
Query 121 ATTGATATTGTCCTTCTTATGTTTTCTCCTACCGGAAGGGCTACTGCTTTCCATGGAGAA 180
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 533 ATTGATATTGTCCTTCTTATGTTTTCCCCTACCGGAAGAGCTACTGCTTTCCATGGAGAA 592
Query 181 CACAGTTGCATTGAAGAGGTTATTTCCAAGTTTGCGCAATTAACTCCACAAGAAAGGACA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 CACAGTTGCATTGAAGAGGTTATTTCCAAGTTTGCGCAATTAACTCCACAAGAAAGGACA 652
Query 241 AAAAGGAAACTGGAGAGCCTTGAAGCATTGAAGAAAACTTTTAAAAAACTGGATCATGAT 300
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 653 AAAAGGAAACTGGAGAGCCTTGAAGCATTGAAGAAAACTTTTAAGAAACTGGATCATGAT 712
Query 301 GTAAATATACATGACTTTTTAGGAGCAAGGAATCAAACTATTGAGGGTCTAAGTAACCAA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 GTAAATATACATGACTTTTTAGGAGCAAGGAATCAAACTATTGAGGGTCTAAGTAACCAA 772
Query 361 GTAGCGATTTACCAAGCTCAGCTAATGGAGTGTCATAGGAGGTTGAGTTGTTGGACGAAC 420
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 GTAGCCATTTACCAAGCTCAGCTAATGGAGTGTCATAGGAGGTTGAGTTGTTGGACGAAC 832
Query 421 ATCGATAGAATAGAAAACACTGAGCACCTCAATTTATTGGAAGAATCATTGAGGAAATCT 480
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 833 ATCGATAGAATAGAAAACACTGAGCACCTCGATTTATTGGAAGAATCATTGAGGAAATCC 892
Query 481 ATTGAAAGAATCCAGATTCACAAGGAACATTACAGAAAGAACCAACTTTTGCCAATAGAA 540
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 893 ATTGAAAGAATCCAGATTCACAAGGAACATTACAGAAAGAACCAACTCTTGCCAATAGAA 952
Query 541 TGTGCAACAACACAGTTTCACAGCGGGATACAGTTGCCTATGGCGATGGGAGGTAATAGT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 953 TGTGCAACAACACAGTTTCACAGCGGGATACAGTTGCCTATGGCGATGGGAGGTAATAGT 1012
Query 601 AGTATGCAAGAAGCTCACTCGATGTCCTGGCTTCCTGATAATGATAACCAGCAAACAATT 660
|||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||
Sbjct 1013 AGTATGCAAGAAGCTCACTCCATGTCTTGGCTTCCTGATAATGATCACCAGCAAACAATC 1072
Query 661 TTACCTGGTGATTCCAGTTTTCTTCCTCATAGAGAGATGGATGGTCCGATTCCCGTTTAC 720
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 1073 TTACCTGGTGATTCCAGTTTTCTTCCCCATAGAGAGATGGATGGTTCGATTCCCGTTTAC 1132
Query 721 TCAAGTTGCTTCTTTGAGTCTACAAAACCAGAAGATCAGATATGCAGCAACCCGGGACAA 780
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1133 TCAAGCTGCTTCTTTGAGTCTACGAAACCAGAAGATCAGATATGCAGCAACCCGGGACAA 1192
Query 781 CAGTTTGAGCACTTAGAACAACAAGGAAACGGTTGTTTGGGTTTACAACAGCTTGGAGAG 840
||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1193 CAGTTTGAGCAGTTAGAACAACAAGGAAACGGTTGTTTGGGGTTACAACAACTTGGAGAG 1252
Query 841 GAATATTCATATCCTACACAATTTGGTACTACTTTGGGAATGGAAGACGATCAAGAGAAA 900
||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1253 GAATATTCATATCCTACACCGTTTGGTACTACTTTGGGAATGGAAGAAGATCAAGAGAAA 1312
Query 901 AAGATAAAATCTGAAATGGAATTGaacaacttgcaacaaca--a-ca--a-caacaacaa 954
||||||||||||||||||||||||||||||||||||||||| | || | |||||||||
Sbjct 1313 AAGATAAAATCTGAAATGGAATTGAACAACTTGCAACAACAGCAACAGCAACAACAACAA 1372
Query 955 caacaa------GATCCTTCAATGTATGATCCCATGGCTAATAATAATGGTGGCTGCTTT 1008
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1373 CAACAACAACAAGATCCTTCAATGTATGATCCCATGGCTAATAATAATGGTGGCTGCTTT 1432
Query 1009 CAGATTCCTCATGATCAGTCCATGTTTGTCAATGatcatcatcatcatcatcatcaccat 1068
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1433 CAGATTCCTCATGATCAGTCCATGTTTGTCAATGATCATCATCATCATCATCACCACCAT 1492
Query 1069 catcaAAATTGGGTTCCAGATTCAATGTTTGGTCAGACTTCTTACAATCAGGTTTGTGT- 1127
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1493 CATCAAAATTGGGTTCCAGATTCAATGTTTGGTCAGACTTCTTACAACCAGGTTTGTGTG 1552
Query 1128 TT-ACACCTCCATTGGAACTATGTAG 1152
|| ||||||||||||||||||| |||
Sbjct 1553 TTCACACCTCCATTGGAACTATCTAG 1578
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56525813670
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5