BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg472102

Length=327
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G18770.1 | Symbols:  | RING/U-box superfamily protein | chr1...   401    2e-111
  AT1G18760.1 | Symbols:  | Zinc finger, C3HC4 type (RING finger)...   331    2e-90 


> AT1G18770.1 | Symbols:  | RING/U-box superfamily protein | chr1:6473370-6474048 
REVERSE LENGTH=321
Length=321

 Score =  401 bits (217),  Expect = 2e-111
 Identities = 283/315 (90%), Gaps = 4/315 (1%)
 Strand=Plus/Plus

Query  1    ATGAGAGTATATTTGTA-CCACAATATCATACGCAATCCTCAACCAGAAAACGCCGGCAC  59
            |||| | ||||||| || ||||| |||||||||||||||||||||||||||||  |||||
Sbjct  1    ATGAAAATATATTT-TAGCCACAGTATCATACGCAATCCTCAACCAGAAAACGAGGGCAC  59

Query  60   AATCACAATCAATGCAAAGATCGACGGTTACAATTCGACACCCGCAAGCAAGCTCGTGGT  119
            ||||||| | |||||||||||||||||||||||| | || ||||||||||||||||||||
Sbjct  60   AATCACAGTAAATGCAAAGATCGACGGTTACAATCCCACGCCCGCAAGCAAGCTCGTGGT  119

Query  120  CAAGTCTTTAGCCAGGAAAATATACAAGACGACCACTAGTTCTACGGGTGAAAGGTGCAC  179
            |||||||||||||||||| |||||||||| ||||||||||||||| ||||||| ||||| 
Sbjct  120  CAAGTCTTTAGCCAGGAAGATATACAAGATGACCACTAGTTCTACTGGTGAAATGTGCAT  179

Query  180  AATTTGTTTGGAAGAGTTTAATGATGGAAGAAGAGTTGTGACTTTGCCTTGCGGACATGA  239
            |||||||||||||||||||| ||| |||||||||||||| ||||| ||||| ||||||||
Sbjct  180  AATTTGTTTGGAAGAGTTTAGTGAAGGAAGAAGAGTTGTTACTTTACCTTGTGGACATGA  239

Query  240  ATTTGACGATGAGTGTGTCCTAACGTGGTGTGAGACTAATCAC-GATTGTCCATTGTGTC  298
             |||||||||||||||||||||| ||||| |||||| |||||| | ||| ||  | ||||
Sbjct  240  CTTTGACGATGAGTGTGTCCTAAAGTGGTTTGAGACCAATCACAG-TTGCCCCCTCTGTC  298

Query  299  GTTTCAAGTTGCCAT  313
            |||||||||||||||
Sbjct  299  GTTTCAAGTTGCCAT  313


> AT1G18760.1 | Symbols:  | Zinc finger, C3HC4 type (RING finger) 
family protein | chr1:6471150-6471824 REVERSE LENGTH=675
Length=675

 Score =  331 bits (179),  Expect = 2e-90
 Identities = 213/229 (93%), Gaps = 3/229 (1%)
 Strand=Plus/Plus

Query  99   ACCCGCAAGCAAGCTCGTGGTCAAGTCTTTAGCCAGGAAAATATACAAGACGACCACTAG  158
            |||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct  450  ACCCGCAAACAAGCTCGTGGTCAATTCTTTAGCCAGGAAAATATACAAGAAGACCACTAG  509

Query  159  TTCTACGGGTGAAAGGTGCACAATTTGTTTGGAAGAGTTTAATGATGGAAGAAGAGTTGT  218
            ||||||   ||||||||||||||||||||||||||||||||| ||||||| || |||| |
Sbjct  510  TTCTAC---TGAAAGGTGCACAATTTGTTTGGAAGAGTTTAACGATGGAACAAAAGTTAT  566

Query  219  GACTTTGCCTTGCGGACATGAATTTGACGATGAGTGTGTCCTAACGTGGTGTGAGACTAA  278
            |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  567  GACTTTACCTTGCGGACATGAATTTGACGATGAGTGTGTCCTAACGTGGTTTGAGACTAA  626

Query  279  TCACGATTGTCCATTGTGTCGTTTCAAGTTGCCATGTGGAGATCAATGA  327
            ||| || |||||| |||||||||||||||||||||||| ||||||||||
Sbjct  627  TCATGACTGTCCACTGTGTCGTTTCAAGTTGCCATGTGAAGATCAATGA  675



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15231127947


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5