BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472103
Length=778
Score E
Sequences producing significant alignments: (Bits) Value
AT1G18790.1 | Symbols: | RWP-RK domain-containing protein | ch... 1271 0.0
> AT1G18790.1 | Symbols: | RWP-RK domain-containing protein |
chr1:6478851-6480043 REVERSE LENGTH=810
Length=810
Score = 1271 bits (688), Expect = 0.0
Identities = 747/776 (96%), Gaps = 2/776 (0%)
Strand=Plus/Plus
Query 4 ATGAAATCGTTTTGCAAGTTGGAGTATCATCAAGTATTTGGCAAAGAAGAT-ATATCATT 62
||||||||||||||||||||||||||| ||||||| |||||||||||| || || |||||
Sbjct 1 ATGAAATCGTTTTGCAAGTTGGAGTATGATCAAGTGTTTGGCAAAGAAAATAAT-TCATT 59
Query 63 CTCATTTCTAAACCACTCATCACTTTACTCTAATCAAAGCGAGTTAGCGAATCCTTTCTT 122
||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 60 CTCATTTCTAAACCACTCATCACTTTACTCTCATCAAAGCGAGTTAGCAAATCCTTTCTT 119
Query 123 CGAATTGGAAGACGAGATTCTTCCTTCTGCAACCTCTAGTAATTACTTTACTTCTGCCTC 182
||| |||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||
Sbjct 120 CGAGTTGGAAGACGAGATGCTTCCTTCTGCTACCTCTAGTAATTGTTTTACTTCTGCCTC 179
Query 183 AAGCTTTCTTGCTTTACCTGATCTTGAACCCATCTCCATCGTATCTCATGAAGCAGATAT 242
||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 180 AAGCTTTCTGGCTTTACCTGATCTTGAACCCATCTCCATTGTGTCTCATGAAGCAGATAT 239
Query 243 ACTTAGTTTGTATGGTTCTGCTTCATGGACCGAAGAAGAGTCGATGCTCGATTCTGATTT 302
||||||| |||||||||||||||||||||||| ||||||| ||||| ||| |||||||||
Sbjct 240 ACTTAGTGTGTATGGTTCTGCTTCATGGACCGCAGAAGAGACGATGTTCGTTTCTGATTT 299
Query 303 TGCGAAAAAGAGTGAAACCACAACTACCAAGAAGAAGAGATGCAGAGAAGAATGTGTTTC 362
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 300 TGCGAAAAAGAGTGAAACCACAACTACCAAGAAGAGGAGATGCAGAGAAGAATGTTTTTC 359
Query 363 TAGTTGTTCTGTTTCAAAGACATTGTCGAAGGAAACCATCTCATTGTACTTTTACATGCC 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TAGTTGTTCTGTTTCAAAGACATTGTCGAAGGAAACCATCTCATTGTACTTTTACATGCC 419
Query 423 GATAACTCAAGCGGCTAGAGAGCTTAACATTGGTTTAACTCTTTTGAAGAAGAGATGCCG 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GATAACTCAAGCGGCTAGAGAGCTTAACATTGGTTTAACTCTTTTGAAGAAGAGATGCCG 479
Query 483 CGAATTGGGTATCAAACGTTGGCCTCATCGTAAGCTCATGAGCCTACAAAAACTCATCAG 542
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CGAATTGGGTATTAAACGTTGGCCTCATCGTAAGCTCATGAGCCTACAAAAACTCATCAG 539
Query 543 CAATGTCAAGGAGATAGAGAAGATGGAAGGGGAAGAAAATGAAGATAGGCTAAGAAATGC 602
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 540 CAATGTCAAGGAGCTAGAGAAGATGGAAGGGGAAGAAAATGAAGATAAGCTAAGAAACGC 599
Query 603 TTTGGAAAAGCTCGAGAAGGAGaaaaaaaCGATTGAGAAGTTACCAGATTTGAAGTTTGA 662
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 600 TTTGGAAAAGCTCGAGAAGGAGAAGAAAACGATTGAGAAGTTACCAGATTTGAAGTTTGA 659
Query 663 GGATAAGACAAAGAGATTGAGACAAGCTTGTTTCAAGGCTAACCATAAGAGGAAGAGAAG 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GGATAAGACAAAGAGATTGAGACAAGCTTGTTTCAAGGCTAACCATAAGAGGAAGAGAAG 719
Query 723 AAGTGGCATGTCCACGCCCATCACATCATCATCTTCTTCTGCTTCTTCCTCTTCTT 778
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 720 AAGTGGCATGTCCACGCCCATCACATCATCATCTTCTTCTGCTTCTGCTTCTTCTT 775
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37826312691
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5