BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472106
Length=2682
Score E
Sequences producing significant alignments: (Bits) Value
AT1G18830.1 | Symbols: | Transducin/WD40 repeat-like superfami... 1716 0.0
AT3G63460.1 | Symbols: | transducin family protein / WD-40 rep... 399 5e-110
> AT1G18830.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr1:6489309-6494218 FORWARD LENGTH=2910
Length=2910
Score = 1716 bits (929), Expect = 0.0
Identities = 1248/1392 (90%), Gaps = 61/1392 (4%)
Strand=Plus/Plus
Query 1087 GAGAAGGAAACATGGGGATTGCTGAAAATCATGCTTGAAGAAGATGGGAACGCAAAGACG 1146
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 1282 GAGAAGGAAACATGGGGACTGCTGAAAATTATGCTTGAAGAAGATGGGAACGCAAAGACG 1341
Query 1147 AAGTTGCGTACCCATCTTGGCTTTAGTTTACCTTCTGATGAAAAGGATCAAACTGTTAAC 1206
|||||||||| ||||||||||||||||||||| ||||| ||||| |||||||||| |||
Sbjct 1342 AAGTTGCGTAGCCATCTTGGCTTTAGTTTACCATCTGAGGAAAATGATCAAACTGCTAAT 1401
Query 1207 GAGCCTCATGCTACATGTTCTTCTACAAACGAGGAAGAAACTAAGAAAATGCCAGAACC- 1265
||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||
Sbjct 1402 GAGCCTCATGCTACATGTTCTTCTACAAACGTGGAAGAAACTCAGAAAGTGCCAGAACCA 1461
Query 1266 -----AGAAG--G-AGAGAGCTCTTATCCAACATTTGATGATGCTATCCAACGTTCATTG 1317
||||| | |||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 1462 GAAGGAGAAGAAGAAGAGAGCTCTGATCCAACATTTGATGATGCCATCCAACGTTCATTG 1521
Query 1318 ATTGTGGGAGATTACAAGGGAGCAGTGGCTCAGTGTTTATCTGCAAATAAGATGGCTGAC 1377
||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 1522 ATTGTGGGAGATTACAAGGAAGCAGTGGCTCAGTGTTTTTCTGCAAATAAGATGGCTGAT 1581
Query 1378 GCTTTAGTGATTGCTCATGTTGGTGGTACAGAATTGTGGGAGAGTACTCGCGatatatat 1437
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||| | ||
Sbjct 1582 GCTTTAGTTATTGCTCATGTTGGTGGTACAGAATTGTGGGAGAGTACTCGTGATA-A-AT 1639
Query 1438 atatatGAGGATGAGCAATGCACCTTACATGAAGGTATATCAACTTTACTTGATATGTTT 1497
||||| ||||||||||||| | || | |||| ||| | |
Sbjct 1640 ATATA--AGGATGAGCAATG-------C-----------TC--C-TTACATGA-A-G--- 1671
Query 1498 GTTGTCTCTGCAATGATGAACAATGATTTAATGACCTTTGTTCATACAAGACCACCTAAA 1557
||||| ||||||||||||||||||||| ||||||||| |||||||||||| |||||||
Sbjct 1672 GTTGTTTCTGCAATGATGAACAATGATCTAATGACCTACCTTCATACAAGACAACCTAAA 1731
Query 1558 TCCTGGAAAGAAACACTTGCTCTCATCTGCACTTTTGCAGAAGGAGATGAATGGATAAGC 1617
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1732 TCCTGGAAAGAAACTCTTGCTCTCATCTGCACTTTTGCAGAAGGAGATGAATGGATAAGC 1791
Query 1618 CTCTGTGATGCTCTTACCTCAAATTTGATGGATCCTGGTTTTACGTTGGCTGCAACTCTG 1677
||||| ||||||||| ||||||||||||||| | |||||||||| |||||||||||||||
Sbjct 1792 CTCTGCGATGCTCTTGCCTCAAATTTGATGGCTGCTGGTTTTACTTTGGCTGCAACTCTG 1851
Query 1678 TGTTACATTTGCTCAGGCAATGTCGACAAAACAGTAGACATTTGGTCAAGGAGCCTTGAA 1737
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1852 TGTTACATTTGCGCAGGCAATGTCGACAAAACAGTAGACATTTGGTCAATGAGCCTTGAA 1911
Query 1738 AAAGAAAGTGATGGGAAATCTTATGCTGAGCGTGTTCAAG-----AT-GCG---ACTCTT 1788
||| |||||| ||||||||||||||||||| ||||||||| || | | ||||||
Sbjct 1912 AAACAAAGTGCTGGGAAATCTTATGCTGAGTGTGTTCAAGATCTTATGGAGAAAACTCTT 1971
Query 1789 GTCCTTGCTTTGGTAACTGGCAACAAGAGATTCAGTGCGTCTCTACGTAAACTCTTTGAG 1848
|||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1972 GTCCTTGCTTTGACAACTTGCAACAAGAGAGTCAGTGCGTCTCTACGTAAACTCTTTGAA 2031
Query 1849 AGTTATGCTGAGATATTGGCCAGTCAAGGACTTCTTGCAACCGCTATGAAGTTCTTAAAA 1908
|||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||
Sbjct 2032 AGTTATGCTGAGATATTGGCTAGTCAAGGACTTATTGCAACAGCTATGAAGTTCTTAAAA 2091
Query 1909 TTTCTTGAGTCTGGCGATTTCTCACCCGAACTTTCAATCTTGCATAATCAGATTGCTCTG 1968
|||| |||||||| ||||||||||| |||||||||||||||| | ||| |||| |||||
Sbjct 2092 CTTCTGGAGTCTGGTGATTTCTCACCTGAACTTTCAATCTTGCGTGATCGGATTTCTCTG 2151
Query 1969 TATGCGGAACCTGAAGCTGCTAACACTTCTGCTTCAGA-AAACACTCAGTCTAAAATCTC 2027
||||| |||||||||||||||||||||||||||||| | |||||||||| ||||||| ||
Sbjct 2152 TATGCAGAACCTGAAGCTGCTAACACTTCTGCTTCA-ACAAACACTCAGCCTAAAATTTC 2210
Query 2028 C-ATGCCATATCAAAAGAAATATTTT-CTTCCAGCTCCATTAAGCAATGCTCAGCCATCA 2085
| || ||||||||| |||||| |||| | |||||||||||||||||||||||||||||||
Sbjct 2211 CAAT-CCATATCAAGAGAAATCTTTTAC-TCCAGCTCCATTAAGCAATGCTCAGCCATCA 2268
Query 2086 AG-A--ACTACTTTTGTTCCTTTGAATCCTCCTAGAGAACTAAAGAACGCGGACCAGTAT 2142
|| | | ||||||| ||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 2269 AGAAGTATTACTTTTTTTCCTTTGAATCCTCCTCGAGAACTAAAGAACGCGGACCAATAT 2328
Query 2143 CAGCAACCAACCATGGATTCTTATTCGTTTAATCGATCCGCTGACCCAGCTTACAATGCA 2202
||||||||||||||||||| | |||| |||||||||||||||| |||||||||||||||
Sbjct 2329 CAGCAACCAACCATGGATTATCATTCATTTAATCGATCCGCTGGCCCAGCTTACAATGC- 2387
Query 2203 T-CACCCGGTCCTGGCTCACATCGATCCATTCC-TTCACAAGTTGGTCCATATATTAACT 2260
| ||||||||||||| ||| ||||||||| ||| ||||||||||||||||||||| ||||
Sbjct 2388 TCCACCCGGTCCTGGTTCATATCGATCCA-TCCATTCACAAGTTGGTCCATATATAAACT 2446
Query 2261 CCAAGATTCCCCAAACTGTTGCTCCACCAATGGGACATATGAATCCAACACACCAGGTAG 2320
||||||||||||||||||||||||| ||| | ||| ||||| |||||||||||||||||
Sbjct 2447 CCAAGATTCCCCAAACTGTTGCTCCTCCAGTCCGACCTATGACTCCAACACACCAGGTAG 2506
Query 2321 CAATGCAACCAGCACCTGTAGCTCCACCACCAACTGTTCAGACCGCAGATACTTCCAATG 2380
| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2507 CGGTGCAACCAGAACCTGTAGCTCCACCACCAACTGTTCAGACTGCAGATACTTCCAATG 2566
Query 2381 TACCAGCCCACCAGAAACCTATTGTGTCTACATTGACAAGGCTATTTAAAGAGACATTTG 2440
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 2567 TACCAGCCCACCAGAAACCTATTGTGGCTTCATTGACAAGGCTATTTAAAGAGACATTTG 2626
Query 2441 AACTATTAGGAG 2452
||| |||| |||
Sbjct 2627 AACCATTAAGAG 2638
Score = 987 bits (534), Expect = 0.0
Identities = 611/649 (94%), Gaps = 2/649 (0%)
Strand=Plus/Plus
Query 219 TGTTCGTGGTCTTGAATTTAATGTCAAGTCCCCAAATAAACTTGCTTCTGGGACTGATGA 278
|||||||||||||||||||||||| ||||| |||||| |||||||||||||| |||||||
Sbjct 351 TGTTCGTGGTCTTGAATTTAATGTTAAGTCTCCAAATCAACTTGCTTCTGGGGCTGATGA 410
Query 279 TGGTACAGTTTGTATTTGGGATTTAACAAATCCTTCAAAGCCTTGTCATTATCTAAAGGG 338
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 411 TGGTACAGTTTGTATTTGGGATTTAGCAAATCCTTCAAAGCCTTCTCATTATCTAAAGGG 470
Query 339 TACTGGTTCTTATATGCAAAGTGAAATCTCTTCTATATCATGGAATAGAGAGTTTCAACA 398
|||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||
Sbjct 471 TACTGGTTCTTATATGCAAAGTGAAATCTCTTCTTTATCATGGAATAAAGGGTTTCAACA 530
Query 399 TGTTTTAGCATCTACCTCATACAAAGGGACTACTGTGATATGGGATGTGAATAACGAGAA 458
||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||
Sbjct 531 TGTTTTAGCATCTACCTCACACAACGGGACTACAGTGATATGGGATGTGAATAACGAGAA 590
Query 459 GGTTATAACAGACTTCAAAAATACCGTTAGGTGCTCAATTTTGCAATGGGATCCTGATAA 518
| ||||||||||||| |||| |||||||||||||||| |||||||||||||||||||| |
Sbjct 591 GATTATAACAGACTTGAAAACTACCGTTAGGTGCTCAGTTTTGCAATGGGATCCTGATCA 650
Query 519 TTATAATCAGATAATGGTTGCATCAGATGAAGATAGTTCACCAAATGTGAAGCTTTTGGA 578
|| ||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 651 TTTTAATCAGATTTTGGTTGCTTCAGATGAAGATAGTTCACCGAATGTGAAGCTTTTGGA 710
Query 579 CATAAGGTATCTACAATCACCTGTTCGCACATTTATTGGCCACCAAAAAGGTGTGATTGC 638
|||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||
Sbjct 711 CATAAGGTATCTACAATCACCTGTTCGCACATTTGTTGGTCACCAAAGAGGTGTGATTGC 770
Query 639 AATGGAGTGGTGTCCAAGTGACAGTTTGTATTTACTTACCTG-GGCGAAAGACAGCCGAA 697
|||||||||||||||||||||||| |||||| |||||||||| || |||||||| |||||
Sbjct 771 AATGGAGTGGTGTCCAAGTGACAGCTTGTATCTACTTACCTGTGG-GAAAGACAACCGAA 829
Query 698 CTATTTGCTGGAACACAAAGACAAGAAAGATTGCGGCTGAGTTACCTACTGGCCAAAATT 757
||||||| ||||||||||||||| ||||||||| |||||||||||||||||| ||||| |
Sbjct 830 CTATTTGTTGGAACACAAAGACAGGAAAGATTGTGGCTGAGTTACCTACTGGTCAAAACT 889
Query 758 GGAATTTTGATGTTCATTGGTATCCAAAGATGCCTGGAGTTATATCAGCATCTTCAGTTG 817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 890 GGAATTTTGATGTTCATTGGTATCCAAAGATGCCTGGAGTTATATCAGCATCTTCAGTTG 949
Query 818 ATGGGAAAATTAACATCTATAACCTTGAGGGTTGCAGCAGCTATGGTAC 866
||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 950 ATGGGAAAATTGGCATCTATAACCTTGAGGGTTGTAGCAGCTATGGTAC 998
Score = 257 bits (139), Expect = 3e-67
Identities = 205/236 (87%), Gaps = 8/236 (3%)
Strand=Plus/Plus
Query 2454 AGAAGATAA---CTCAAGAAAGCTAGGAGCTCTGTTTTTGAAACTAAATAGTGGAGACAT 2510
||||||||| |||||||||||||||||||||||||| |||||||||| ||| |||||
Sbjct 2676 AGAAGATAATTGCTCAAGAAAGCTAGGAGCTCTGTTTTCAAAACTAAATAATGGGGACAT 2735
Query 2511 CTCAAAGAACGCTGCTGGAAAACTCACTCAGCTCTGTCAAGCTCTGAACAAAAATAATCT 2570
||| ||||||||||||| |||||||||||||||||||||||||||| ||||| | || |
Sbjct 2736 CTCGAAGAACGCTGCTGAAAAACTCACTCAGCTCTGTCAAGCTCTGGACAAACGTGATTT 2795
Query 2571 TGGTGCAGCTTTACAAATACAGGTGGCT-ATGACAAACACCGAATGGTATGAGTGCAGTT 2629
||||||||| ||| ||||||||| |||| ||||||| |||||||||| ||||||||||||
Sbjct 2796 TGGTGCAGCGTTAAAAATACAGG-GGCTTATGACAAGCACCGAATGGGATGAGTGCAGTT 2854
Query 2630 TTTGGCTTCCAACACTAAAGCAAATCATCA--A-GGGAAAGCAAAATGTTCAGTGA 2682
||||||||||||||| ||| |||| ||| | ||||| ||||||||| | ||||
Sbjct 2855 CTTGGCTTCCAACACTTAAGAAAATGATCGTCACGGGAAGGCAAAATGTGCGGTGA 2910
Score = 209 bits (113), Expect = 9e-53
Identities = 132/141 (94%), Gaps = 1/141 (1%)
Strand=Plus/Plus
Query 947 AAATGCTTATTTCGTTCAACAAAAATCTCCCTGAGGCATCTGAGGTTTTTCTGCATACCC 1006
||| |||||||||||| ||||||||||| ||||||||||||||||| |||||||||| |
Sbjct 1101 AAA-GCTTATTTCGTTTAACAAAAATCTTCCTGAGGCATCTGAGGTCTTTCTGCATAGCT 1159
Query 1007 TGGCCACAGAACAAAGTTTGGTGAATCGAATTTCTAAATTTGAAGCTGCATTAGAAAATG 1066
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1160 TGGCCACAGAAAAAAGTTTGGTGAATCGAATTTCTAAATTTGAAGCTGCATTAGAAAATG 1219
Query 1067 GAGAGAAGACTTCAATTAGGG 1087
||||||||||||| ||||||
Sbjct 1220 GAGAGAAGACTTCCCTTAGGG 1240
Score = 156 bits (84), Expect = 1e-36
Identities = 111/124 (90%), Gaps = 1/124 (1%)
Strand=Plus/Plus
Query 87 AGTA-GTCATTGCAAAAGCTCTGAGCGGTTTAATCGACTCGCTTAGGGAAGTTATGGATC 145
|||| |||| ||| |||| || |||||||||||||||||||||| |||||||||||| ||
Sbjct 171 AGTAGGTCAATGCCAAAGTTCCGAGCGGTTTAATCGACTCGCTTGGGGAAGTTATGGCTC 230
Query 146 TGGATCTGATGGTCACATCGCCGGTGGCCTCTTTGACGGGAACATCGGTTTATGGAATCC 205
|||||| ||||||| ||| |||||||| || ||||||||||||||||||||||||||||
Sbjct 231 TGGATCCGATGGTCTCATAGCCGGTGGTCTAGTTGACGGGAACATCGGTTTATGGAATCC 290
Query 206 AATT 209
||||
Sbjct 291 AATT 294
> AT3G63460.1 | Symbols: | transducin family protein / WD-40 repeat
family protein | chr3:23430644-23437344 REVERSE LENGTH=3783
Length=3783
Score = 399 bits (216), Expect = 5e-110
Identities = 445/554 (80%), Gaps = 22/554 (4%)
Strand=Plus/Plus
Query 1498 GTTGTCTCTGCAATGATGAACAATGATTTAATGA-CCTTTGTTC-ATACAAGACCACCTA 1555
||||| ||||| ||| ||||||||||| | | || || || || ||||||| ||| ||
Sbjct 1970 GTTGTTTCTGCGATGGTGAACAATGATCTCAGGAGCC-TT-ATCTATACAAGGTCACATA 2027
Query 1556 AATCCTGGAAAGAAACACTTGCTCTCATCTGCACTTTTGCAGAAGGAGATGAATGGATAA 1615
| | ||||||||| || ||||||||| |||| ||||||||| ||||||| |||||| ||
Sbjct 2028 AGTTCTGGAAAGAGACTCTTGCTCTCCTCTGTACTTTTGCACAAGGAGAACAATGGACAA 2087
Query 1616 GCCTCTGTGATGCTCTTACCTCAAATTTGATGGATCCTGGTTTTACGTTGGCTGCAACTC 1675
||| |||||||| ||| |||| || ||||||| | ||||| || ||||||||| ||
Sbjct 2088 CCCTGTGTGATGCCCTTGCCTCGAAGTTGATGGCTGCTGGTAACACTTTGGCTGCAGTTC 2147
Query 1676 TGTGTTACATTTGCTCAGGCAATGTCGACAAAACAGTAGACATTTGGTCAAGGAGCCTTG 1735
| || ||||||||| |||||||||| |||| ||||||||| |||||||| ||||||||||
Sbjct 2148 TCTGCTACATTTGCGCAGGCAATGTTGACAGAACAGTAGAAATTTGGTCGAGGAGCCTTG 2207
Query 1736 AAAAAGAAAGTGATGGGAA-ATCTTATGCTGAGCGTGTTCAAG-----AT---G-CGACT 1785
||| || | ||| |||| |||||||||||||| | |||||| || | ||||
Sbjct 2208 CAAATGAGCGGGAT-GGAAGATCTTATGCTGAGCTTCTTCAAGATCTTATGGAGAAGACT 2266
Query 1786 CTTGTCCTTGCTTTGGTAACTGGCAAC-AAGAGATTCAGTGCGTCTCTACGTAAACTCTT 1844
|||||||||||||||| |||||||||| || || ||||| || ||||| ||||||||||
Sbjct 2267 CTTGTCCTTGCTTTGGCAACTGGCAACAAAAAG-TTCAGCGCATCTCTGTGTAAACTCTT 2325
Query 1845 TGAGAGTTATGCTGAGATATTGGCCAGTCAAGGACTTCTTGCAACCGCTATGAAGTTCTT 1904
||||||||||||||||||| ||||||| ||||| |||||| |||| || ||||||| |||
Sbjct 2326 TGAGAGTTATGCTGAGATACTGGCCAGCCAAGGGCTTCTTACAACGGCAATGAAGTACTT 2385
Query 1905 AAAATTTCTTGAGTCTGGCGATTTCTCACCCGAACTTTCAATCTTGCATAATCAG-ATTG 1963
||| |||| || ||||| | || ||||| ||||||||||| || | | ||| | |||
Sbjct 2386 GAAAGTTCTGGATTCTGGTGGCTTGTCACCTGAACTTTCAATATTACGTGATC-GTATTT 2444
Query 1964 CTCTGTATGCGGAACCTGAAGCTGCTAACACTTCTGCTTCAGAAAACACTCAGTCTAAAA 2023
|||| | ||| |||||||| | |||||||| | ||||||| |||||||||| || |||
Sbjct 2445 CTCTATCTGCAGAACCTGA-GA--CTAACACTACAGCTTCAGGAAACACTCAGCCTCAAA 2501
Query 2024 TCTCCATGCCATAT 2037
| |||||||||||
Sbjct 2502 GCACCATGCCATAT 2515
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 133193233665
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5