BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg472107

Length=295
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G18835.1 | Symbols: MIF3 | mini zinc finger | chr1:6496098-6...   490    3e-138


> AT1G18835.1 | Symbols: MIF3 | mini zinc finger | chr1:6496098-6496396 
REVERSE LENGTH=299
Length=299

 Score =  490 bits (265),  Expect = 3e-138
 Identities = 285/295 (97%), Gaps = 0/295 (0%)
 Strand=Plus/Plus

Query  1    GGGAGATCAGTTTACGAAGAAGATGAAGAAGAGGCAAGTGGTGATAAAACAGAGAAAAAT  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  3    GGGAGATCAGTTTACGAAGAAGATGAAGAAGAGGCAAGTGGTGATAAAACAGAGAAAAAG  62

Query  61   CTCTTACACTATGACTTCTTCTTCAAGCAACGTCCGTTACGTTGAGTGTCAGAAGAATCA  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  63   CTCTTACACTATGACTTCTTCTTCAAGCAACGTCCGTTACGTTGAGTGTCAGAAGAATCA  122

Query  121  TGCCGCTAATATCGGCGGCTACGCTGTCGACGGTTGCCGGGAGTTTATGGCAAGCGGCGG  180
            |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  123  TGCCGCTAATATTGGCGGCTACGCTGTTGACGGTTGCCGGGAGTTTATGGCAAGCGGCGG  182

Query  181  CGATGACGCTTTGACGTGTGCTGCTTGTGGCTGTCACCGGAATTTTCACCGGAGGGAAGT  240
             ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  183  AGATGATGCTTTGACGTGTGCTGCCTGTGGCTGTCACCGGAATTTTCACCGGAGGGAAGT  242

Query  241  TGATACGGAGGTTGTTTGTGAGTATTCTCCTCCGAATGCAAACGACTAATTAACG  295
            ||| ||||||||||||||||||||||||||||||||||||||| ||| || ||||
Sbjct  243  TGACACGGAGGTTGTTTGTGAGTATTCTCCTCCGAATGCAAACAACTGATGAACG  297



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13622559979


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5