BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472110
Length=1436
Score E
Sequences producing significant alignments: (Bits) Value
AT1G18850.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 2204 0.0
> AT1G18850.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: nucleolus; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; Has 40 Blast hits to
40 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr1:6504806-6506424 REVERSE LENGTH=1456
Length=1456
Score = 2204 bits (1193), Expect = 0.0
Identities = 1360/1439 (95%), Gaps = 17/1439 (1%)
Strand=Plus/Plus
Query 1 TTTGGCTTTTCATCTTTATCTGTCTCTTCTCTTAACCTCACACAGATATCGACTCTAGGC 60
||| |||||||||||||| |||||||| | |||||||||||||||||||||| ||| |||
Sbjct 1 TTTAGCTTTTCATCTTTACCTGTCTCTGCCCTTAACCTCACACAGATATCGAGTCTCGGC 60
Query 61 GATTCAAGTGAACTCTTATCCTTATAATTTCCTCCTCAAAGATTTTGGATAAAGTTTTGA 120
|||| ||||||||||| |||||||||||||| ||| |||||||||||||||||||||||
Sbjct 61 GATTGAAGTGAACTCTCATCCTTATAATTTCATCC-GAAAGATTTTGGATAAAGTTTTGA 119
Query 121 tttttttttGGTTCGCAATGACGCTGCTCGAAGCTATCTCCAACGCCGTAGCGAATCAGG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 --TTTTTTTGGTTCGCAATGACGCTGCTCGAAGCTATCTCCAACGCCGTAGCGAATCAGG 177
Query 181 ACAAGGTCGATTCGCAGTCCGATTATCCATTCCCTCTTAGCCACGATGGTATCTTCGCGA 240
|||||||||| ||||| |||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 178 ACAAGGTCGACTCGCAATCCGATTATCCAATCCCTCTTAGCCACGATGGTATCTTTGCGA 237
Query 241 ACCTGAAACCGAAGCTAGAAAACCCTAATCTTGGTACCCTAATCAATCCAATTTCCGGGT 300
| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 238 ATCTGAAACCAAAGCTAGAAAACCCTAATCTTGGTACCCTTGTCAATCCAATTTCCGGGT 297
Query 301 GGGGAATCTCCGGAAGTGATGTTGAAGTTATCGATTTGGGTAAAAAGTTTTCATCTAAGC 360
|||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 298 GGGGAATCTCTGAAAGTGATGTTGAAGTCATCGATTTGGGTAAAAAGTTTTCATCTAAGC 357
Query 361 TCAAAAGGAAGCTTAAGGATACTAACGGGTTTGTCCAAGATGAGTTTGTCAAGATGTTGA 420
| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 358 TGAAAAGGAAGCTTAAGGATACTAACGGGTTTGTCAAAGATGAGTTTGTCAAGATGTTAA 417
Query 421 AGCAGTTTCTTGAGAAAATTGGTGAGAAAGTTGGGATTTCAGAGGCTGAGCCTGGGATGG 480
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 418 AGCAGTTTCTTGAGAAAATTGGTGAGAAAGTTGGGATTTCAGAGGCTGAGTCTGAGATGG 477
Query 481 TTTTGGAAGATCAAGCTGGTCCTGAGATACAGATACTGGTGGAGAAAAATGGGTTTTTGA 540
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 478 TTTTGGGAGATCAAGCTGGTTCTGAGATACAGATACTGGTGGAGAAAAATGGGTTTTTGA 537
Query 541 TGGGTAGAGATGTATCTGGTTTAGTGTTGAAAGGTTGTATTAGTCTAGAGATGTGGGAGC 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 TGGGTAGAGATGTATCTGGTTTAGTGTTGAAAGGTTGTATTAGTCTAGAGATGTGGGAGC 597
Query 601 TAGTGGAAATTTTGATTTCAAACTCCTTGGTTGATCATTCTTCATACTCTTATTTAGTTA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 TAGTGGAAATTTTGATTTCAAACTCCTTGGTTGATCATTCTTCATACTCTTATTTAGTTA 657
Query 661 GCAATCTTGTTGAGAAGCAAAGGTCAGATTTGCTTTGCGTAGTGATCAAAGAAGCTTCAG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 GCAATCTTGTTGAGAAGCAAAGGTCAGATTTGCTTTGCGTAGTGATCAAAGAAGCTTCAG 717
Query 721 ATCTTGGGGCAACAGAGCTACTTTTGATCTTGAAGTATTTTCTT-TGCCCATCAAAGGAA 779
||||||||||||| |||||||||| ||||||||||||||| || |||||||||||||||
Sbjct 718 ATCTTGGGGCAACTGAGCTACTTTCAATCTTGAAGTATTTT-TTATGCCCATCAAAGGAA 776
Query 780 GCAATTACCACTATGGCTAAGGTAAGAGAAGAATGGGAGAGTCAGGCTATGTTGGCCATT 839
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 777 GCAATTAGCACTATGGCTAAGGTAAGAGAAGAATGGGAGAGTCAGGCTATGTTGGCTATT 836
Query 840 GAAAAGGTGAGCAACACAGAGCTATCAAAGAAGTCTAAAGTTGCTGAAGAGGCTTCGATC 899
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 837 GAAAAGGTGAGCAACACAGAGCTATCAAAGAAGTCTAAAGTTGCAGAAGAGGCTTCTATC 896
Query 900 TTGCTGATGGTTGCTCATGACGGGTTTTCTACCTCTGAGCTTTGCCTGCATTACTTGTTA 959
||| | ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 897 TTGTTAATGGTTGCTCATGACGGGTTTTCAACCTCAGAGCTTTGCCTGCATTACTTGTTA 956
Query 960 GCTTCACGGAACGTTGATGAAGTCATGTTTGCATCTGCAGTCAGTAAGTTGAATGGTAAT 1019
||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 957 GCTTCACGGAATGTTGACGAAGTCATGTTTGCATCTGCAGTCAGTAAGTTGAATGGCAAT 1016
Query 1020 GAGATGAGTAGCTTTATTCGATACCTCTCTAAATGGATGAAGAAGTATGAGATGTTCCCT 1079
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 GAGATGGGTAGCTTTATTCGATACCTCTCTAAATGGATGAAGAAGTATGAGATGTTCCCA 1076
Query 1080 CAAGCTGGTCCATGCCCTAAAGCCGCCTCCAAGCTCGGTTTGAAACTATGCAACTGGGTT 1139
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1077 CAAGCTGGTCCATGCCCTAAAGCCGCCTCCAAGCTTGGTTTGAAACTATGCAACTGGGTT 1136
Query 1140 CCTGAACTCGA-AGACATAACCAAATGTTTGGGACGTATTATCGATGAGAACTTCTCCAC 1198
||||||||| | |||||| |||||||||||||||| | ||||||||||||||||||||||
Sbjct 1137 CCTGAACTC-ACAGACATTACCAAATGTTTGGGACTTCTTATCGATGAGAACTTCTCCAC 1195
Query 1199 CCTGGTTCTGTACTCGGATTTGCATGAAGAGCTAAAGTCTATTGCAAGAGTAGCAGATGG 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1196 TCTGGTTCTGTACTCGGATTTGCATGAAGAGCTAAAGTCTATTGCAAGAGTAGCCGATGG 1255
Query 1259 TTTAGCCTCAGAATCAAAACTTTGCTGTTTTATGGCTAATGTGGTTGAAAGTTTGAAACT 1318
||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||| ||
Sbjct 1256 GTTAGCTTCAGAATCAAAACTTTCCTGTTTTGTGGCTAATGTGGTTGAAAGTTTGAAGCT 1315
Query 1319 TGGAGCTGCCCGAAACTAGATTTTCACAGTTCTCAGTCTAGATGGCGTTTGATGCAACCC 1378
|||||||||||||||||||||||||||| || || | || | | || |||||||||
Sbjct 1316 TGGAGCTGCCCGAAACTAGATTTTCACAATT----GT-TGGA-G-C-TTA-ATGCAACCC 1366
Query 1379 TGTTTTCACTTGTTAT-ATGTTCTCCAGTGCCTTTTGTATTTTCTAGTTTCAGTTCATC 1436
||||||||||| |||| ||| ||||||||| | ||||||||||||||||||||||||||
Sbjct 1367 TGTTTTCACTTTTTATTATGGTCTCCAGTGACATTTGTATTTTCTAGTTTCAGTTCATC 1425
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70782768450
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5