BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472112
Length=1901
Score E
Sequences producing significant alignments: (Bits) Value
AT1G18880.1 | Symbols: | Major facilitator superfamily protein... 2953 0.0
AT1G18890.1 | Symbols: ATCDPK1, CPK10, CDPK1, AtCPK10 | calcium... 909 0.0
> AT1G18880.1 | Symbols: | Major facilitator superfamily protein
| chr1:6520748-6523368 FORWARD LENGTH=1943
Length=1943
Score = 2953 bits (1599), Expect = 0.0
Identities = 1810/1909 (95%), Gaps = 25/1909 (1%)
Strand=Plus/Plus
Query 1 AATGGAGGTTGAGAAGACAGAGAAGAACATTACGGAGGATGATGAGTCTAAGATCATCTA 60
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 52 AATGGAGGTTGAGAAGACAGAGAAGAACATTGCAGAGGATGATGAGTCTAAGATCATCTA 111
Query 61 CAGAGGATGGAAAGTCATGCCCTTCATCATTGGAAATGAGACATTTGAGAAGCTGGGTAT 120
|||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||
Sbjct 112 CAGAGGATGGAAAGTCATGCCCTTCATCATTGGAAATGAGACATTTGAAAAATTGGGGAT 171
Query 121 TGTTGGGAGTTCATCGAATCTGGTCATTTACTTAACGACGGTTTTCAACATGAAGAGCAT 180
|||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 172 TGTTGGAAGTTCATCGAATCTGGTTATATACTTAACGACGGTTTTCAACATGAAGAGCAT 231
Query 181 CACGGCTGCGAAAGTCGTCAACATCTACGGTGGCACTAGCAACTTTGGCACCATCGTCGC 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 232 CACGGCTGCGAAAGTCGTCAACATCTACGGTGGCACAAGCAACTTTGGCACCATCGTCGC 291
Query 241 CGCCTTCCTCTGTGACTCCTACTTTGGCCGCTACAAGACCCTATCTTTCGCCATGATCGC 300
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 TGCTTTCCTCTGTGACTCCTACTTTGGCCGCTACAAGACCCTATCTTTCGCCATGATCGC 351
Query 301 TTGCTTTCTCGGTTCGGTGGCGATGGATCTAACGGCTGTGTTTCCTCAGCTGCATCCAGC 360
||||||||||||||||||||| |||||||||||||||||| ||| || |||||||||||
Sbjct 352 TTGCTTTCTCGGTTCGGTGGCAATGGATCTAACGGCTGTGATTCATCCCCTGCATCCAGC 411
Query 361 TAAATGCGCTAAGGAAATAGGAAGCGTGTGCAGTGGGCCATCTATTGGACAAATCATGTT 420
| |||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||
Sbjct 412 TCAATGCGCTAAGGAAATAGGAAGCGTGTGCAATGGGCCATCCATCGGACAAATCATGTT 471
Query 421 TCTCGCTGGAGCAATGGTTTTGCTGGTGATTGGAGCCGGTGGGATTAGGCCGTGCAATCT 480
|||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 472 TCTCGCCGGAGCAATGGTTTTGCTGGTGATCGGAGCCGGTGGGATTAGGCCATGCAATCT 531
Query 481 TCCCTTTGGTGCTGATCAGTTTGATCCGAAGACAAAAGAAGGGAGACGAGGGATTGAGAG 540
||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 532 TCCATTTGGTGCTGATCAGTTCGATCCGAAGACAAAAGAAGGGAAACGAGGGATTGAGAG 591
Query 541 TTTCTTCAATTGGTATTTCTTCACCTTCACGTTTGCTCAGATGGTGTCGTTAACGCTCAT 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 592 TTTCTTCAATTGGTATTTCTTCACCTTCACGTTTGCTCAGATGGTGTCGTTAACCCTCAT 651
Query 601 CGTCTATGTTCAGTCAAACGTGAGCTGGAGCATTGGTTTAGCCATCCCAGCTATTCTAAT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 CGTCTATGTTCAGTCAAACGTGAGCTGGAGCATTGGTTTAGCCATCCCAGCTATTCTAAT 711
Query 661 GTTACTTGGTTGCATCATATTCTTCGCTGGTTCTAAGCTTTATGTCAAAGTTAAAGCTAG 720
| ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 712 GCTACTTGGTTGCATCATATTCTTCGCTGGTTCTAAGCTCTATGTCAAGGTTAAAGCTAG 771
Query 721 TGGCAGTCCCATTCACAGCATAACTCGTGTCATTGTTGTCGCCATCAAGAAGAGGCGGTT 780
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 772 TGGCAGTCCCATTCACAGCATAACTCGTGTCATTGTTGTCGCGATCAAGAAGAGGCGGTT 831
Query 781 AAAGCCCGTTGGGTCTAACGAGCTTTACAACTACATCGGGAAG-GATTTCAAGAACTCGA 839
||||||||||||| ||||||||||||||||||||||| | || ||||||||||||||||
Sbjct 832 AAAGCCCGTTGGGCCTAACGAGCTTTACAACTACATC-GCCAGTGATTTCAAGAACTCGA 890
Query 840 AACTGGGCCATACAGAGCAGTTCAGGTTTCTTGACAAATCGGCAATCCAAACACAAGATG 899
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 891 AATTGGGCCATACAGAGCAGTTCAGGTTTCTTGACAAATCGGCAATCCAAACACAAGACG 950
Query 900 ACAAGTTGAACAAAGATGGGTCGCCGGTGGATCCATGGAAACTTTGCAGTATGCAACAAG 959
||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 951 ACAAGCTGAACAAAGATGGGTCGCCGGTGGATGCATGGAAACTCTGCAGTATGCAACAAG 1010
Query 960 TGGAGGAAGTGAAATGCGTGATCCGGGTGCTTCCGGTTTGGCTCCCGGCCGCCTTATTCT 1019
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1011 TGGAGGAAGTTAAATGCGTGATCCGGGTGCTTCCGGTTTGGCTCTCGGCCGCCTTATTCT 1070
Query 1020 ACCTAGCTTACATTCAACAAACAACCTACACAATATTTCAGTCTCTTCAATCCGATAGAC 1079
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1071 ACCTAGCTTACATTCAACAAACAACCTACACAATCTTTCAGTCTCTTCAATCCGATAGAC 1130
Query 1080 ACCTTGGTTCAGGAAGTTTCCAGATCCCAGCCGCG-ACTTATACCGTCTTCTTAATGCTT 1138
||||||| ||||||||||||||||||| |||| | |||||||||||||| ||||||||
Sbjct 1131 GCCTTGGTCCAGGAAGTTTCCAGATCCCGGCCG-GTTCTTATACCGTCTTCCTAATGCTT 1189
Query 1139 GGAATGACAATATTCATACCAATCTATGACCGCGTCCTTGTACCTTTATC-TAGAAAGTA 1197
|||||||| ||||||||||| |||||||||||||||||||||||||| | |||||||||
Sbjct 1190 GGAATGACGATATTCATACCTATCTATGACCGCGTCCTTGTACCTTT-CCTTAGAAAGTA 1248
Query 1198 TACAGGCAAAGACGGCGGTATCACACAACTGCAGAGAGTTGGAGCAGGCA-TGTTTCTAT 1256
|||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1249 TACAGGCAGAGACGGCGGTATCACACAACTGCAGAGAGTTGGAGCAGG-ACTGTTTCTAT 1307
Query 1257 GCATCACAAGTATGATGGTGTCTGCAATTGTAGAACAATACAGAAGAAAGGTAGCTCTCA 1316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1308 GCATCACAAGTATGATGGTGTCTGCAATTGTAGAACAATACAGAAGAAAGGTAGCTCTCA 1367
Query 1317 CAAAACCGACGCTAGGGTTTGCCCCAAGAAAAGGCGCAATCTCTTCAATGTCCGGTATGT 1376
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 1368 CAAAACCGACGCTAGGGTTGGCCCCAAGAAAAGGCGCAATCTCTTCGATGTCCGGTATGT 1427
Query 1377 GGTTGATTCCTCAGCTAGTGCTAATGGGTATCGCGGACGCCCTTGCTGGAGTTGGACAAA 1436
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1428 GGTTGATTCCTCAGCTAGTGCTAATGGGTATCGCGGACGCCCTCGCTGGAGTTGGACAAA 1487
Query 1437 TGGAGTTTTATTACAAACAGTTTCCAGAGAACATGAGAAGTTTTGCTGGTTCCCTGTATT 1496
|||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 1488 TGGAGTTTTACTACAAACAGTTTCCAGAGAACATGCGAAGTTTTGCTGGTTCTCTGTATT 1547
Query 1497 ATTGCGGAATTGGATTGGCGAGTTACCTCGGCACCTTTTTGTTATCGGCGGTGCACGATA 1556
|||| ||||| |||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 1548 ATTGTGGAATCGGATTGGCGAGTTACCTCAGCACCTTTTTGTTATCGGCGGTACACGATA 1607
Query 1557 CGACAGAGGGATTTTCGGGAGGAAGCTGGCTTCCGGAAGATTTAAACAAGGGAAGATTGG 1616
| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1608 CCACAGAGGGATTTTCAGGAGGAAGTTGGCTTCCGGAAGATTTAAACAAGGGAAGATTGG 1667
Query 1617 AGTACTTCTACTTCTTGGTTGCTGGTATTATGACTCTAAACTTTGCCTATTTCTTGTTGG 1676
|||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1668 AGTATTTCTACTTCTTGGTTGCTGGTATGATGACTCTAAACTTGGCCTATTTCTTGTTGG 1727
Query 1677 TCTCACATTGGTACCGTTACAAAGATGTTGTGGCCAAGGACAAGGACATGGACAAGTCTT 1736
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1728 TCTCACATTGGTACCGTTACAAAGATGTTGTGGCCAAGGACAAGGACATGGACAAGACTT 1787
Query 1737 CTGAC-GAGTTTGATAAGGTGTCAGTGTAATAAAGATCTGTACCTT-GACTCTTTGGTAT 1794
||| | ||||||||||||||||||||||||||||||||| | |||| ||||||||||| |
Sbjct 1788 CTG-CTGAGTTTGATAAGGTGTCAGTGTAATAAAGATCTTT-CCTTTGACTCTTTGGTTT 1845
Query 1795 AGGGCTTTGAGTTGCTTTGAGACAATAAAA-TACAACCTTTGAACAAAACATTACATACA 1853
|||| | |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1846 AGGG----G-----CTTTGAGACAATAAAAATACAACCTTTGAACAAAACATTACATACA 1896
Query 1854 AA-TACAATGTAAAATGTTTTTTATATATAAAAGGACCATAGCTTCCGT 1901
|| ||||||||||||||||| | |||| |||| | ||||||||||||||
Sbjct 1897 AAATACAATGTAAAATGTTTAT-ATATGTAAA-GAACCATAGCTTCCGT 1943
> AT1G18890.1 | Symbols: ATCDPK1, CPK10, CDPK1, AtCPK10 | calcium-dependent
protein kinase 1 | chr1:6522764-6525962 REVERSE
LENGTH=2568
Length=2568
Score = 909 bits (492), Expect = 0.0
Identities = 579/618 (94%), Gaps = 17/618 (3%)
Strand=Plus/Minus
Query 1288 AGAACAATACAGAAGAAAGGTAGCTCTCACAAAACCGACGCTAGGGTTTGCCCCAAGAAA 1347
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2568 AGAACAATACAGAAGAAAGGTAGCTCTCACAAAACCGACGCTAGGGTTGGCCCCAAGAAA 2509
Query 1348 AGGCGCAATCTCTTCAATGTCCGGTATGTGGTTGATTCCTCAGCTAGTGCTAATGGGTAT 1407
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2508 AGGCGCAATCTCTTCGATGTCCGGTATGTGGTTGATTCCTCAGCTAGTGCTAATGGGTAT 2449
Query 1408 CGCGGACGCCCTTGCTGGAGTTGGACAAATGGAGTTTTATTACAAACAGTTTCCAGAGAA 1467
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2448 CGCGGACGCCCTCGCTGGAGTTGGACAAATGGAGTTTTACTACAAACAGTTTCCAGAGAA 2389
Query 1468 CATGAGAAGTTTTGCTGGTTCCCTGTATTATTGCGGAATTGGATTGGCGAGTTACCTCGG 1527
|||| |||||||||||||||| ||||||||||| ||||| |||||||||||||||||| |
Sbjct 2388 CATGCGAAGTTTTGCTGGTTCTCTGTATTATTGTGGAATCGGATTGGCGAGTTACCTCAG 2329
Query 1528 CACCTTTTTGTTATCGGCGGTGCACGATACGACAGAGGGATTTTCGGGAGGAAGCTGGCT 1587
||||||||||||||||||||| |||||||| |||||||||||||| |||||||| |||||
Sbjct 2328 CACCTTTTTGTTATCGGCGGTACACGATACCACAGAGGGATTTTCAGGAGGAAGTTGGCT 2269
Query 1588 TCCGGAAGATTTAAACAAGGGAAGATTGGAGTACTTCTACTTCTTGGTTGCTGGTATTAT 1647
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 2268 TCCGGAAGATTTAAACAAGGGAAGATTGGAGTATTTCTACTTCTTGGTTGCTGGTATGAT 2209
Query 1648 GACTCTAAACTTTGCCTATTTCTTGTTGGTCTCACATTGGTACCGTTACAAAGATGTTGT 1707
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2208 GACTCTAAACTTGGCCTATTTCTTGTTGGTCTCACATTGGTACCGTTACAAAGATGTTGT 2149
Query 1708 GGCCAAGGACAAGGACATGGACAAGTCTTCTGAC-GAGTTTGATAAGGTGTCAGTGTAAT 1766
||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||
Sbjct 2148 GGCCAAGGACAAGGACATGGACAAGACTTCTG-CTGAGTTTGATAAGGTGTCAGTGTAAT 2090
Query 1767 AAAGATCTGTACCTT-GACTCTTTGGTATAGGGCTTTGAGTTGCTTTGAGACAATAAAA- 1824
|||||||| | |||| ||||||||||| ||||| | ||||||||||||||||
Sbjct 2089 AAAGATCTTT-CCTTTGACTCTTTGGTTTAGGG----G-----CTTTGAGACAATAAAAA 2040
Query 1825 TACAACCTTTGAACAAAACATTACATACAAA-TACAATGTAAAATGTTTTTTATATATAA 1883
||||||||||||||||||||||||||||||| ||||||||||||||||| | |||| |||
Sbjct 2039 TACAACCTTTGAACAAAACATTACATACAAAATACAATGTAAAATGTTTAT-ATATGTAA 1981
Query 1884 AAGGACCATAGCTTCCGT 1901
| | ||||||||||||||
Sbjct 1980 A-GAACCATAGCTTCCGT 1964
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94126021875
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5