BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472118
Length=2741
Score E
Sequences producing significant alignments: (Bits) Value
AT1G18950.1 | Symbols: | DDT domain superfamily | chr1:6546399... 4010 0.0
> AT1G18950.1 | Symbols: | DDT domain superfamily | chr1:6546399-6551887
FORWARD LENGTH=2731
Length=2731
Score = 4010 bits (2171), Expect = 0.0
Identities = 2593/2777 (93%), Gaps = 107/2777 (4%)
Strand=Plus/Plus
Query 1 CTGATTAACCGATTTCGATTTCCCCACAATGCCTTAAGGGTTTTGATTCTCTCTCCCTAA 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 19 CTGATTAACCGATTTCGATTTCCCCACAATGCCAAAAGGGTTTTGATTCTCTCTTCCTAA 78
Query 61 AAA--TC-----T-CA---A-AAATAAACCCTAATTTAGATCTTTGATCTCTAATC-CTC 107
||| || | || | ||| |||||||||||| ||||||| |||||| | | |||
Sbjct 79 AAATCTCAAATTTACACCCAGAAAAAAACCCTAATTTCGATCTTTAATCTCT-A-CGCTC 136
Query 108 TTTAATGGGTTCCTCCTCCGATATCGTCCCTGACCGATCTCCAGCCGACGATGTAGCTCC 167
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 137 TCTAATGGGTTCCTCCTCCGATATCGTCCCTGACCGATCTCCAGCTGACGATGTAGCTCC 196
Query 168 GGTTACAGATACCAAAATTCCAAAGGAGGAGCCTTCGACGCTTAGGAGAACGCGTCCTTC 227
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 197 GGTTACAGATACCAAAATTCCAAAGGAGGAGCCTTTGACGCTTAGGAGAACGCGTCCTTC 256
Query 228 TCGGGCTTGTACTGTTAGGGCACAGCAGCGGCTTCAGGAGCTTCAAGCGGCGGAGAGAAA 287
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 257 TCGGGCTTGTACTGTTAGGGCTCAGCAGCGGCTTCAAGAGCTTCAAGCGGCGGAGAGAAA 316
Query 288 GCTTAAGCCGCCTAAGAAGGAGTTTAAACGAGAGCAGCATCGACGGAGAGAAGAGGTTGT 347
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 317 GCTTAAGCCGCCTAAGAAGGAGTATAAACGAGAGCAGCATCGACGGAGAGAAGAGGTGGT 376
Query 348 GGAGGAAGATGAGGATGT-GGATGATGATGATGATCAAGAGCAAGAAGAG---GACGGAA 403
|||||||||||||||| | ||| | ||||| ||||||||| | |||||| ||||||
Sbjct 377 GGAGGAAGATGAGGAT-TCGGA-G--GATGACGATCAAGAGGATGAAGAGAACGACGGAG 432
Query 404 ATGATGAGAGTAAGCCGCAGC-A--CGTTGCTGGAGGAAGTTCTGCTAAAATCATTACTT 460
||||||||||||| ||| ||| | ||||||||||||||||||| |||||||||||||||
Sbjct 433 ATGATGAGAGTAATCCGAAGCAATGCGTTGCTGGAGGAAGTTCTACTAAAATCATTACTT 492
Query 461 CTCTTGTTCCGCCACCGGAACCTTCACAGATGCCGCGATGGAATCTTCGTTCTATGTGGG 520
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 493 CTCTTGTTCCGCCACCGGAACCTTCACAGATGCCGCGGTGGAATCTTCGTTCTATGTGGG 552
Query 521 AACTTGCTTCTGTGCTCAATTTCTTGCATGTATTTAGACCGCTTTTGAAAATCAATGCGG 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 553 AACTTGCTTCTGTGCTCAATTTCTTGCATGTATTTAGACCGCTTTTGAAAATCAATGCGG 612
Query 581 AGTTTTCAGCGGAGGAGTTTGAAACGGCTTTGCTTACTCCAAACGATACTTTAAGTGATA 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 613 AGTTTTCAGCGGAGGAGTTTGAAACGGCTTTGCTTACTCCAAACGATACTTTAAGTGATA 672
Query 641 TTCATATTCCTCTGCTAAAGGCCATTCCTCCTGTAACTCGAATGGCTCTCACCCGTGATA 700
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 673 TTCACATTCCTCTGCTAAAGGCCATTCCGCCTGTAACTCGAATGGCTCTCACCCGTGATA 732
Query 701 CCTGGGTAACTGTCCTGTGCAGAAAAATAAGAGATTGCTGGCATTGGGTCGCAGAAGGGG 760
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 733 CCTGGGTAACTGTCCTGTGCAGAAAAATAAGAGATTGCTGGCATTGGGTTGCAGAAGGGG 792
Query 761 ACCTCCCTATTGTTGCCTCGCAAGGGCGGGAGATTGAAGCGTACAAAAATCTTGATCCAG 820
|||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 793 ACCTTCCTATTGTTGCCTTGCAAGGGCGGGAGATTGAAGTTTACAAAAATCTTGATCCAG 852
Query 821 CCATCCGTGTGGTGATTTTAAAAGCGTTATGTGATATTCGTGTTGAGCAAGAG-ATTATC 879
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 853 CCATCCGTGTGGTGATTTTAAAAGCGTTATGTGATATTCGTGTTGAGCAAGAGGAT-ATC 911
Query 880 AGGAGCTACATTGACAACTCTCTTAAAACTGGTGTTCACCTGTCAGTTTTTCGCAAAGAT 939
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 912 AGGAGCTACATTGACAACTCTCTTAAAACTGGCGTTCACCTGTCAGTTTTTCGCAAAGAT 971
Query 940 CGTGTTGGGGGTGATTCACATGGAGTTAATTTTTGGTATGAGGATGATCCCTTAATTGGT 999
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 972 CGTGTTGGGGGTGATTCACATGGAGTTAATTTTTGGTATGAGGAAGATCCCTTAATTGGT 1031
Query 1000 CACCGTCTATATCGGGAAATAAGGAAAGCAGAGGTGTTGAAGGTCAAAACAAAGGGTTCC 1059
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1032 CACCGTTTATATCGGGAAATAAGGAAAGCAGAGGTGTTGAAGGTCAAAACAAAGGGTTCC 1091
Query 1060 AAGATTCTTCCTAACATAACATACCAATGGGAAACTGTTGCCACTAATTTCGATGAATTT 1119
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1092 AAGATTCTTCCTAACATAACATACCAATGGGAAACTGTTGCCACTAATTTCGATGAATTC 1151
Query 1120 CAAGATGTTTCTGAAAAACTTCTTCAGAGTAGTAGTAGAATTGAAGTTTCTCTAGGGAAG 1179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1152 CAAGATGTTTCTGAAAAACTTCTTCAGAGTAGTAGTAGAATTGAAGTTTCTCTAGGGAAG 1211
Query 1180 AAGTTAGTGAAAGATATGCTTCCTGAGATAGAAAAAGAACACAAGAGGAAAGAAAAATTG 1239
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1212 AAGTTAGTAAAAGATATGCTTCCTGAGATAGAAAAAGAACACAAGAGGAAAGAAAAATTG 1271
Query 1240 TTGAAAAAGCAACACAGACAGGCTCTCCTCCTTGATAACTTTGTGGTTGTTGATGGTCTT 1299
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1272 TTGAAAAAGCAACACAGACAGGCTCTTCTCCTTGATAACTTTGTGGTTGTTGATGGTCTT 1331
Query 1300 GCTGGGCGATCTCTCCGTGATAGGAAACCAGTTAGATACACTTTTGGTAATGTTAATGAC 1359
|||||||||||||||||||||||||| ||||||||||||||||||| | || | |
Sbjct 1332 GCTGGGCGATCTCTCCGTGATAGGAAGCCAGTTAGATACACTTTTG--A-TG--A-T--- 1382
Query 1360 CTGATTATTGCAGATGATTATGATAAGTCCATAAATGATGCTATCAAGATAACAAAGAAG 1419
| || | | | | | | | ||||||||||||||||||||||||||||||||
Sbjct 1383 -T-AT----G-A--T-A--A-G-T----CCATAAATGATGCTATCAAGATAACAAAGAAG 1424
Query 1420 AAACATCCATCACCAGAACCTCCTCTCAATAGAAGAGAATCTGCCAGATTGGACGCTCTT 1479
||||||||||||||||||| ||||||| | ||||||||||||||||| ||||||||||||
Sbjct 1425 AAACATCCATCACCAGAACATCCTCTCCACAGAAGAGAATCTGCCAGGTTGGACGCTCTT 1484
Query 1480 GCGAATGGCAGATCGACCAGTTCAACCCACCCTACTGAGCCTGTGAACGATACAGCATCT 1539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1485 GCGAATGGCAGATCGACCAGTTCAACCCACCCTACTGAGCCTGTGAACGATACAGCATCT 1544
Query 1540 GGGAGATCTTCTGATTTTGCTGATTATGATGATTTCGATGAGCATAGAGATGAATCATTG 1599
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1545 GGGAGATCTTCTGATTTTGCTGATTATGATGATTTCGATGAGCATAGAGATGAATCTTTG 1604
Query 1600 GACAGAAGGCAAGACACTGTGCGCAGACAACGACCTCAACGATATTCAGCTACGGACTTT 1659
|||||||||| | || | | |||||||||||||||||||||||||||||||||
Sbjct 1605 GACAGAAGGC--G-CA--G-----A--CAACGACCTCAACGATATTCAGCTACGGACTTT 1652
Query 1660 GTTGAAACTGTTTCAGACAATGAGGTAGAATTTCAAAGTGACGATGACATATATGGGGAA 1719
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1653 GTTGAAACTGTTTCAGACAATGAGGTAGAATTTCAAAGTGACGATGACATTTATGGGGAA 1712
Query 1720 GCAGTTTATGATGAAGAATATCTGAGGAAGCGTAAACAGAAAAAGCTCTCTAGTGGTTCT 1779
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 1713 GCAGTTTATGATGAAGAATATCTGAAGAAGCGTAAACAGAAAAAGCTCTCTAGCGGTTCT 1772
Query 1780 GAGGGAGATGAAGA---G-----T-A------CAAATGGGATGAAGACAATGCCGAGTAT 1824
|||||||||||||| | | | ||||||||||||||||||||| ||||||
Sbjct 1773 GAGGGAGATGAAGAAAAGGGAGATGAAGAATACAAATGGGATGAAGACAATGCTGAGTAT 1832
Query 1825 GAGgaagaagaagaagaggaagaagaagaagaTTCTCTAAGTGCAAGTGAAGAGGATAGT 1884
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1833 GAGGAAGAAGAAGAAGAGGAAGAAGAAGAAGATTCCCTAAGTGCAAGCGAAGAGGATAGT 1892
Query 1885 GATGAACCCCGGAGGACTAAGAAAGTGCCACGGAGAGAAACTAAGTTAAGATCAAGATCA 1944
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1893 GATGAACCCCGGAGGGCTAAGAAAATGCCACGGAGAGAAACTAAGTTAAGATCAAGATCA 1952
Query 1945 AATGATTTTCGGCCAGGCCTGAGACGTAGCAAAAGAGCCACGAGAATCGATTACCAACAA 2004
|||||||||||||||||||||||||| || |||||||||||| |||| ||||||||||||
Sbjct 1953 AATGATTTTCGGCCAGGCCTGAGACGAAGTAAAAGAGCCACGCGAATTGATTACCAACAA 2012
Query 2005 TATGAGCTCTCAGACTCAGACAAAGAAGCAGCAGGATTGGCAAAACGTAAGCGGTTGGTT 2064
|||||| |||||||||| |||||||||||| ||||| ||||||||||||||||||| |||
Sbjct 2013 TATGAGTTCTCAGACTCGGACAAAGAAGCAACAGGACTGGCAAAACGTAAGCGGTTTGTT 2072
Query 2065 GAGCCGGATGAACCTTCGGATGAAACAGGGAATGGGGATTTCACAATGGGAAGTCAGGAC 2124
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073 GAGCCGGACGAACCTTCTGATGAAACAGGGAATGGGGATTTCACAATGGGAAGTCAGGAC 2132
Query 2125 TCTGAAGAAAATGCAAATGACCCAGAAACAAAATCTGGTGAAGAAGAAGTTGAAGAAGAA 2184
||||||||||||||||| ||||||||||||||||||||||||||||||| | |
Sbjct 2133 TCTGAAGAAAATGCAAACGACCCAGAAACAAAATCTGGTGAAGAAGAAG---A-G----- 2183
Query 2185 GAGCCGAGAGAGGTCAATGACAATGCAGAGACAACAAATGGTAAAGAGAATAACCAACTT 2244
|||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 2184 ---CCGAGAGATGTCAATGACAATGCAGATACAACAAATGGAAAAGAGAATAACCAACTT 2240
Query 2245 AACAAATCAAACGGCATAGCAGACCAAGAAGAAGTTGAGGGTGTAGTAGGCAAAAGGCGT 2304
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 2241 AACAAATCAAACGGCACAACAGACCAAGAAGAAGTTGAGGGTGTAGTAGGCAAAAGGCGT 2300
Query 2305 TACCTTGACTTAAACGAGCTGGCCCCTGTGTCTGGTTTTGATGATGGTCCAAGTACAGTA 2364
||||| |||||||||||||||||||| || ||||||||||||||||| ||||||||||||
Sbjct 2301 TACCTCGACTTAAACGAGCTGGCCCCGGTATCTGGTTTTGATGATGGCCCAAGTACAGTA 2360
Query 2365 TTGAAGGATGATGATAAGACAGACAATTCATAAGCAAGAAAGAGAGACCTCTCTTTGCCG 2424
|||||||||||||||||||||||||||||||||||||||||||||| | | | |||
Sbjct 2361 TTGAAGGATGATGATAAGACAGACAATTCATAAGCAAGAAAGAGAG---T-T-T--GCCT 2413
Query 2425 TCATAAAGCTTCTTCCTCTGGTCAATCACCATTGTATGATAAGCAAGATTTTCACGAGTT 2484
|||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2414 TCATAAAGCT-C--CCTCTGGTCGATCACCATTGTATGATAAGCAAGATTTTCACGAGTT 2470
Query 2485 ATTTCTGGCAAAAACCCCTTGCAGAGAAAAGTTGAAACGGTAAGAGACACTTCATTGGCT 2544
||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2471 ATTTCTGGCAACATCCCCTTGCAGAGAAAAGTTGAAACGGTAAGAGACACTCCATTGGCT 2530
Query 2545 TTTTCTTCATTCAAGCATATCTGCCTTCTTGTTGTTTTTAAAGTAATTCAGGCAAATTCG 2604
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2531 TTTTCTTCATTCAAGCATATCTGCCTTCTTGTTGTTTT-AAAGTAATTCAGGCAAATTCG 2589
Query 2605 GTTTGATAAGTGAAGAGGAGAATGTTGTGGAGGCCGAAGAGGTATGTGTAGATTAGGTTA 2664
| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2590 GCT-GATAAGTGAAGAGGAGAATGTTATGGAGGCCGAAGAGGTATGTGTAGATTAGGTTA 2648
Query 2665 GTCAtttttttCTTACCATGAAGAAAGAAACAATGAAGAGGGTGAACCAGATATTCCTAA 2724
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2649 GTCATTTTTT-CTTACCATGAAGAAAGAAACAATGAAGAGGGTGAACCAGATATTCCTAA 2707
Query 2725 GAGCTGTTCAATGTTTT 2741
|||||||| ||||||||
Sbjct 2708 GAGCTGTTTAATGTTTT 2724
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 136153083302
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5