BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg472118 Length=2741 Score E Sequences producing significant alignments: (Bits) Value AT1G18950.1 | Symbols: | DDT domain superfamily | chr1:6546399... 4010 0.0 > AT1G18950.1 | Symbols: | DDT domain superfamily | chr1:6546399-6551887 FORWARD LENGTH=2731 Length=2731 Score = 4010 bits (2171), Expect = 0.0 Identities = 2593/2777 (93%), Gaps = 107/2777 (4%) Strand=Plus/Plus Query 1 CTGATTAACCGATTTCGATTTCCCCACAATGCCTTAAGGGTTTTGATTCTCTCTCCCTAA 60 ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| Sbjct 19 CTGATTAACCGATTTCGATTTCCCCACAATGCCAAAAGGGTTTTGATTCTCTCTTCCTAA 78 Query 61 AAA--TC-----T-CA---A-AAATAAACCCTAATTTAGATCTTTGATCTCTAATC-CTC 107 ||| || | || | ||| |||||||||||| ||||||| |||||| | | ||| Sbjct 79 AAATCTCAAATTTACACCCAGAAAAAAACCCTAATTTCGATCTTTAATCTCT-A-CGCTC 136 Query 108 TTTAATGGGTTCCTCCTCCGATATCGTCCCTGACCGATCTCCAGCCGACGATGTAGCTCC 167 | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 137 TCTAATGGGTTCCTCCTCCGATATCGTCCCTGACCGATCTCCAGCTGACGATGTAGCTCC 196 Query 168 GGTTACAGATACCAAAATTCCAAAGGAGGAGCCTTCGACGCTTAGGAGAACGCGTCCTTC 227 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 197 GGTTACAGATACCAAAATTCCAAAGGAGGAGCCTTTGACGCTTAGGAGAACGCGTCCTTC 256 Query 228 TCGGGCTTGTACTGTTAGGGCACAGCAGCGGCTTCAGGAGCTTCAAGCGGCGGAGAGAAA 287 ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| Sbjct 257 TCGGGCTTGTACTGTTAGGGCTCAGCAGCGGCTTCAAGAGCTTCAAGCGGCGGAGAGAAA 316 Query 288 GCTTAAGCCGCCTAAGAAGGAGTTTAAACGAGAGCAGCATCGACGGAGAGAAGAGGTTGT 347 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || Sbjct 317 GCTTAAGCCGCCTAAGAAGGAGTATAAACGAGAGCAGCATCGACGGAGAGAAGAGGTGGT 376 Query 348 GGAGGAAGATGAGGATGT-GGATGATGATGATGATCAAGAGCAAGAAGAG---GACGGAA 403 |||||||||||||||| | ||| | ||||| ||||||||| | |||||| |||||| Sbjct 377 GGAGGAAGATGAGGAT-TCGGA-G--GATGACGATCAAGAGGATGAAGAGAACGACGGAG 432 Query 404 ATGATGAGAGTAAGCCGCAGC-A--CGTTGCTGGAGGAAGTTCTGCTAAAATCATTACTT 460 ||||||||||||| ||| ||| | ||||||||||||||||||| ||||||||||||||| Sbjct 433 ATGATGAGAGTAATCCGAAGCAATGCGTTGCTGGAGGAAGTTCTACTAAAATCATTACTT 492 Query 461 CTCTTGTTCCGCCACCGGAACCTTCACAGATGCCGCGATGGAATCTTCGTTCTATGTGGG 520 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 493 CTCTTGTTCCGCCACCGGAACCTTCACAGATGCCGCGGTGGAATCTTCGTTCTATGTGGG 552 Query 521 AACTTGCTTCTGTGCTCAATTTCTTGCATGTATTTAGACCGCTTTTGAAAATCAATGCGG 580 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 553 AACTTGCTTCTGTGCTCAATTTCTTGCATGTATTTAGACCGCTTTTGAAAATCAATGCGG 612 Query 581 AGTTTTCAGCGGAGGAGTTTGAAACGGCTTTGCTTACTCCAAACGATACTTTAAGTGATA 640 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 613 AGTTTTCAGCGGAGGAGTTTGAAACGGCTTTGCTTACTCCAAACGATACTTTAAGTGATA 672 Query 641 TTCATATTCCTCTGCTAAAGGCCATTCCTCCTGTAACTCGAATGGCTCTCACCCGTGATA 700 |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 673 TTCACATTCCTCTGCTAAAGGCCATTCCGCCTGTAACTCGAATGGCTCTCACCCGTGATA 732 Query 701 CCTGGGTAACTGTCCTGTGCAGAAAAATAAGAGATTGCTGGCATTGGGTCGCAGAAGGGG 760 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 733 CCTGGGTAACTGTCCTGTGCAGAAAAATAAGAGATTGCTGGCATTGGGTTGCAGAAGGGG 792 Query 761 ACCTCCCTATTGTTGCCTCGCAAGGGCGGGAGATTGAAGCGTACAAAAATCTTGATCCAG 820 |||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||| Sbjct 793 ACCTTCCTATTGTTGCCTTGCAAGGGCGGGAGATTGAAGTTTACAAAAATCTTGATCCAG 852 Query 821 CCATCCGTGTGGTGATTTTAAAAGCGTTATGTGATATTCGTGTTGAGCAAGAG-ATTATC 879 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 853 CCATCCGTGTGGTGATTTTAAAAGCGTTATGTGATATTCGTGTTGAGCAAGAGGAT-ATC 911 Query 880 AGGAGCTACATTGACAACTCTCTTAAAACTGGTGTTCACCTGTCAGTTTTTCGCAAAGAT 939 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 912 AGGAGCTACATTGACAACTCTCTTAAAACTGGCGTTCACCTGTCAGTTTTTCGCAAAGAT 971 Query 940 CGTGTTGGGGGTGATTCACATGGAGTTAATTTTTGGTATGAGGATGATCCCTTAATTGGT 999 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 972 CGTGTTGGGGGTGATTCACATGGAGTTAATTTTTGGTATGAGGAAGATCCCTTAATTGGT 1031 Query 1000 CACCGTCTATATCGGGAAATAAGGAAAGCAGAGGTGTTGAAGGTCAAAACAAAGGGTTCC 1059 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1032 CACCGTTTATATCGGGAAATAAGGAAAGCAGAGGTGTTGAAGGTCAAAACAAAGGGTTCC 1091 Query 1060 AAGATTCTTCCTAACATAACATACCAATGGGAAACTGTTGCCACTAATTTCGATGAATTT 1119 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1092 AAGATTCTTCCTAACATAACATACCAATGGGAAACTGTTGCCACTAATTTCGATGAATTC 1151 Query 1120 CAAGATGTTTCTGAAAAACTTCTTCAGAGTAGTAGTAGAATTGAAGTTTCTCTAGGGAAG 1179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1152 CAAGATGTTTCTGAAAAACTTCTTCAGAGTAGTAGTAGAATTGAAGTTTCTCTAGGGAAG 1211 Query 1180 AAGTTAGTGAAAGATATGCTTCCTGAGATAGAAAAAGAACACAAGAGGAAAGAAAAATTG 1239 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1212 AAGTTAGTAAAAGATATGCTTCCTGAGATAGAAAAAGAACACAAGAGGAAAGAAAAATTG 1271 Query 1240 TTGAAAAAGCAACACAGACAGGCTCTCCTCCTTGATAACTTTGTGGTTGTTGATGGTCTT 1299 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1272 TTGAAAAAGCAACACAGACAGGCTCTTCTCCTTGATAACTTTGTGGTTGTTGATGGTCTT 1331 Query 1300 GCTGGGCGATCTCTCCGTGATAGGAAACCAGTTAGATACACTTTTGGTAATGTTAATGAC 1359 |||||||||||||||||||||||||| ||||||||||||||||||| | || | | Sbjct 1332 GCTGGGCGATCTCTCCGTGATAGGAAGCCAGTTAGATACACTTTTG--A-TG--A-T--- 1382 Query 1360 CTGATTATTGCAGATGATTATGATAAGTCCATAAATGATGCTATCAAGATAACAAAGAAG 1419 | || | | | | | | | |||||||||||||||||||||||||||||||| Sbjct 1383 -T-AT----G-A--T-A--A-G-T----CCATAAATGATGCTATCAAGATAACAAAGAAG 1424 Query 1420 AAACATCCATCACCAGAACCTCCTCTCAATAGAAGAGAATCTGCCAGATTGGACGCTCTT 1479 ||||||||||||||||||| ||||||| | ||||||||||||||||| |||||||||||| Sbjct 1425 AAACATCCATCACCAGAACATCCTCTCCACAGAAGAGAATCTGCCAGGTTGGACGCTCTT 1484 Query 1480 GCGAATGGCAGATCGACCAGTTCAACCCACCCTACTGAGCCTGTGAACGATACAGCATCT 1539 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1485 GCGAATGGCAGATCGACCAGTTCAACCCACCCTACTGAGCCTGTGAACGATACAGCATCT 1544 Query 1540 GGGAGATCTTCTGATTTTGCTGATTATGATGATTTCGATGAGCATAGAGATGAATCATTG 1599 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1545 GGGAGATCTTCTGATTTTGCTGATTATGATGATTTCGATGAGCATAGAGATGAATCTTTG 1604 Query 1600 GACAGAAGGCAAGACACTGTGCGCAGACAACGACCTCAACGATATTCAGCTACGGACTTT 1659 |||||||||| | || | | ||||||||||||||||||||||||||||||||| Sbjct 1605 GACAGAAGGC--G-CA--G-----A--CAACGACCTCAACGATATTCAGCTACGGACTTT 1652 Query 1660 GTTGAAACTGTTTCAGACAATGAGGTAGAATTTCAAAGTGACGATGACATATATGGGGAA 1719 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1653 GTTGAAACTGTTTCAGACAATGAGGTAGAATTTCAAAGTGACGATGACATTTATGGGGAA 1712 Query 1720 GCAGTTTATGATGAAGAATATCTGAGGAAGCGTAAACAGAAAAAGCTCTCTAGTGGTTCT 1779 ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| Sbjct 1713 GCAGTTTATGATGAAGAATATCTGAAGAAGCGTAAACAGAAAAAGCTCTCTAGCGGTTCT 1772 Query 1780 GAGGGAGATGAAGA---G-----T-A------CAAATGGGATGAAGACAATGCCGAGTAT 1824 |||||||||||||| | | | ||||||||||||||||||||| |||||| Sbjct 1773 GAGGGAGATGAAGAAAAGGGAGATGAAGAATACAAATGGGATGAAGACAATGCTGAGTAT 1832 Query 1825 GAGgaagaagaagaagaggaagaagaagaagaTTCTCTAAGTGCAAGTGAAGAGGATAGT 1884 ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 1833 GAGGAAGAAGAAGAAGAGGAAGAAGAAGAAGATTCCCTAAGTGCAAGCGAAGAGGATAGT 1892 Query 1885 GATGAACCCCGGAGGACTAAGAAAGTGCCACGGAGAGAAACTAAGTTAAGATCAAGATCA 1944 ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1893 GATGAACCCCGGAGGGCTAAGAAAATGCCACGGAGAGAAACTAAGTTAAGATCAAGATCA 1952 Query 1945 AATGATTTTCGGCCAGGCCTGAGACGTAGCAAAAGAGCCACGAGAATCGATTACCAACAA 2004 |||||||||||||||||||||||||| || |||||||||||| |||| |||||||||||| Sbjct 1953 AATGATTTTCGGCCAGGCCTGAGACGAAGTAAAAGAGCCACGCGAATTGATTACCAACAA 2012 Query 2005 TATGAGCTCTCAGACTCAGACAAAGAAGCAGCAGGATTGGCAAAACGTAAGCGGTTGGTT 2064 |||||| |||||||||| |||||||||||| ||||| ||||||||||||||||||| ||| Sbjct 2013 TATGAGTTCTCAGACTCGGACAAAGAAGCAACAGGACTGGCAAAACGTAAGCGGTTTGTT 2072 Query 2065 GAGCCGGATGAACCTTCGGATGAAACAGGGAATGGGGATTTCACAATGGGAAGTCAGGAC 2124 |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 2073 GAGCCGGACGAACCTTCTGATGAAACAGGGAATGGGGATTTCACAATGGGAAGTCAGGAC 2132 Query 2125 TCTGAAGAAAATGCAAATGACCCAGAAACAAAATCTGGTGAAGAAGAAGTTGAAGAAGAA 2184 ||||||||||||||||| ||||||||||||||||||||||||||||||| | | Sbjct 2133 TCTGAAGAAAATGCAAACGACCCAGAAACAAAATCTGGTGAAGAAGAAG---A-G----- 2183 Query 2185 GAGCCGAGAGAGGTCAATGACAATGCAGAGACAACAAATGGTAAAGAGAATAACCAACTT 2244 |||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 2184 ---CCGAGAGATGTCAATGACAATGCAGATACAACAAATGGAAAAGAGAATAACCAACTT 2240 Query 2245 AACAAATCAAACGGCATAGCAGACCAAGAAGAAGTTGAGGGTGTAGTAGGCAAAAGGCGT 2304 |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| Sbjct 2241 AACAAATCAAACGGCACAACAGACCAAGAAGAAGTTGAGGGTGTAGTAGGCAAAAGGCGT 2300 Query 2305 TACCTTGACTTAAACGAGCTGGCCCCTGTGTCTGGTTTTGATGATGGTCCAAGTACAGTA 2364 ||||| |||||||||||||||||||| || ||||||||||||||||| |||||||||||| Sbjct 2301 TACCTCGACTTAAACGAGCTGGCCCCGGTATCTGGTTTTGATGATGGCCCAAGTACAGTA 2360 Query 2365 TTGAAGGATGATGATAAGACAGACAATTCATAAGCAAGAAAGAGAGACCTCTCTTTGCCG 2424 |||||||||||||||||||||||||||||||||||||||||||||| | | | ||| Sbjct 2361 TTGAAGGATGATGATAAGACAGACAATTCATAAGCAAGAAAGAGAG---T-T-T--GCCT 2413 Query 2425 TCATAAAGCTTCTTCCTCTGGTCAATCACCATTGTATGATAAGCAAGATTTTCACGAGTT 2484 |||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 2414 TCATAAAGCT-C--CCTCTGGTCGATCACCATTGTATGATAAGCAAGATTTTCACGAGTT 2470 Query 2485 ATTTCTGGCAAAAACCCCTTGCAGAGAAAAGTTGAAACGGTAAGAGACACTTCATTGGCT 2544 ||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 2471 ATTTCTGGCAACATCCCCTTGCAGAGAAAAGTTGAAACGGTAAGAGACACTCCATTGGCT 2530 Query 2545 TTTTCTTCATTCAAGCATATCTGCCTTCTTGTTGTTTTTAAAGTAATTCAGGCAAATTCG 2604 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 2531 TTTTCTTCATTCAAGCATATCTGCCTTCTTGTTGTTTT-AAAGTAATTCAGGCAAATTCG 2589 Query 2605 GTTTGATAAGTGAAGAGGAGAATGTTGTGGAGGCCGAAGAGGTATGTGTAGATTAGGTTA 2664 | | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 2590 GCT-GATAAGTGAAGAGGAGAATGTTATGGAGGCCGAAGAGGTATGTGTAGATTAGGTTA 2648 Query 2665 GTCAtttttttCTTACCATGAAGAAAGAAACAATGAAGAGGGTGAACCAGATATTCCTAA 2724 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2649 GTCATTTTTT-CTTACCATGAAGAAAGAAACAATGAAGAGGGTGAACCAGATATTCCTAA 2707 Query 2725 GAGCTGTTCAATGTTTT 2741 |||||||| |||||||| Sbjct 2708 GAGCTGTTTAATGTTTT 2724 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 136153083302 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5