BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472119
Length=858
Score E
Sequences producing significant alignments: (Bits) Value
AT1G18960.1 | Symbols: | myb-like HTH transcriptional regulato... 1260 0.0
> AT1G18960.1 | Symbols: | myb-like HTH transcriptional regulator
family protein | chr1:6552752-6553940 FORWARD LENGTH=1026
Length=1026
Score = 1260 bits (682), Expect = 0.0
Identities = 763/802 (95%), Gaps = 5/802 (1%)
Strand=Plus/Plus
Query 58 TTTCTTTCAAAGGAAAATGGTGAGATCTTGTTCTTCAAAATCAAAAAATCCTTGGGCAAA 117
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 87 TTTCTTTTAAAGGAAAATGGTGAGATCTTGTTCTTCAAAATCAAAGAATCCTTGGACAAA 146
Query 118 CGAAGAAGACACCGCCCAAAAGTTTGTGTTTGCATCTGCGTCCAAAAACGGATCTGCAGC 177
|||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 147 CGAAGAAGACACAACCCAAAAGTTTGTGTTTGCGTCTGCGTCCAAAAACGGATGTGCAGC 206
Query 178 TCCTAAGAAAATAGGACTTAGGAGATGTGGGAAGAGTTGCAGAGTGAGAAAGACTGATCA 237
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 207 TCCTAAGAAAATAGGACTTAGGAGATGTGGAAAGAGTTGCAGAGTGAGAAAGACTGATCA 266
Query 238 TTCAGGAA-CAAAGCATGAGAGCTTCACTTCTGAAGAAGAAGATCTGATCATCAAGATGC 296
|||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 267 TTCAGGAACCAAA-CATGAGAGCTTCACTTCTGAAGACGAAGATCTGATCATCAAGATGC 325
Query 297 ACGCAGCAATGGGAAGCAGGTGGCAACTTATTGCACAACATTTACCAGGAAAGACAGAAG 356
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 326 ACGCAGCAATGGGAAGCAGATGGCAACTTATTGCACAACATTTACCAGGAAAGACAGAAG 385
Query 357 AAGAAGTGAAGATGTTTTGGAACACAAAACTAAAGAAGAAACTGTCTGAGATGGGGATAG 416
||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||
Sbjct 386 AAGAAGTGAAGATGTTTTGGAACACAAAACTGAAGAAGAAACTGTCGGAAATGGGGATAG 445
Query 417 ATCATGTCACTCACCGGCCCTTCTCTCACGTACTTGCTGAATACGGCAACATCAATGGTG 476
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 446 ATCATGTCACTCACCGTCCCTTTTCTCACGTACTTGCTGAATACGGCAACATCAATGGTG 505
Query 477 GTGGAAACCTAAACCCTAATCCCTTGAACCAAGCCGGATCTCTTGGACGTAATCACTCGC 536
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 506 GTGGAAACCTAAACCCTAATCCCTCGAACCAAGCCGGATCTCTTGGACGCAATCACTCGC 565
Query 537 TCAACGATGATGCTCATCAACAACAACAACCTGATGATTCAGGAGATCTCATGTTTCATT 596
|||| ||||||| |||||||||||||| | | |||||||||||||||||||||||||||
Sbjct 566 TCAATGATGATGGTCATCAACAACAAC--C-TAATGATTCAGGAGATCTCATGTTTCATT 622
Query 597 TACAAGCAATCAAGCTTATGACTGAGTCATCAAACCAAGTCAAGCCCGAGTCTACGTTTG 656
|||||||||||||||||||||| || ||||| |||||||||||||| |||||||||||||
Sbjct 623 TACAAGCAATCAAGCTTATGACAGATTCATCGAACCAAGTCAAGCCTGAGTCTACGTTTG 682
Query 657 TGTACGCCTCTTCGTCTTCTTCTAATTCGTCTCCTCCATTATTCTCTTCAACTTGTTCTA 716
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 683 TGTACGCCTCTTCGTCTTCTTCTAACTCGTCTCCTCCATTGTTCTCTTCAACTTGTTCTA 742
Query 717 CCATTGCTCAGGAGAATTTAGAGGTTAACTTCACTTGGTCTGACTTTCTTCTTGAACAAG 776
|||| ||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||
Sbjct 743 CCATAGCTCAGGAGAATTCAGAGGTTAACTTCACTTGGTCTGACTTCCTTCTTGACCAAG 802
Query 777 AAACCTTCCATGAAAACCAACAGAGTCATCCTCAAGAACTAGACAGCTTGTTTGGGAACG 836
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 803 AAACCTTCCATGAAAACCAACAGAATCATCCTCAAGAACTAGACAGCTTGTTTGGGAACG 862
Query 837 ACTTCTCTGAGGCAGCAGCAGC 858
||||||| |||| | |||||||
Sbjct 863 ACTTCTCCGAGGTAACAGCAGC 884
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41845044451
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5