BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg472119 Length=858 Score E Sequences producing significant alignments: (Bits) Value AT1G18960.1 | Symbols: | myb-like HTH transcriptional regulato... 1260 0.0 > AT1G18960.1 | Symbols: | myb-like HTH transcriptional regulator family protein | chr1:6552752-6553940 FORWARD LENGTH=1026 Length=1026 Score = 1260 bits (682), Expect = 0.0 Identities = 763/802 (95%), Gaps = 5/802 (1%) Strand=Plus/Plus Query 58 TTTCTTTCAAAGGAAAATGGTGAGATCTTGTTCTTCAAAATCAAAAAATCCTTGGGCAAA 117 ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||| Sbjct 87 TTTCTTTTAAAGGAAAATGGTGAGATCTTGTTCTTCAAAATCAAAGAATCCTTGGACAAA 146 Query 118 CGAAGAAGACACCGCCCAAAAGTTTGTGTTTGCATCTGCGTCCAAAAACGGATCTGCAGC 177 |||||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||| Sbjct 147 CGAAGAAGACACAACCCAAAAGTTTGTGTTTGCGTCTGCGTCCAAAAACGGATGTGCAGC 206 Query 178 TCCTAAGAAAATAGGACTTAGGAGATGTGGGAAGAGTTGCAGAGTGAGAAAGACTGATCA 237 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 207 TCCTAAGAAAATAGGACTTAGGAGATGTGGAAAGAGTTGCAGAGTGAGAAAGACTGATCA 266 Query 238 TTCAGGAA-CAAAGCATGAGAGCTTCACTTCTGAAGAAGAAGATCTGATCATCAAGATGC 296 |||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 267 TTCAGGAACCAAA-CATGAGAGCTTCACTTCTGAAGACGAAGATCTGATCATCAAGATGC 325 Query 297 ACGCAGCAATGGGAAGCAGGTGGCAACTTATTGCACAACATTTACCAGGAAAGACAGAAG 356 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 326 ACGCAGCAATGGGAAGCAGATGGCAACTTATTGCACAACATTTACCAGGAAAGACAGAAG 385 Query 357 AAGAAGTGAAGATGTTTTGGAACACAAAACTAAAGAAGAAACTGTCTGAGATGGGGATAG 416 ||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||| Sbjct 386 AAGAAGTGAAGATGTTTTGGAACACAAAACTGAAGAAGAAACTGTCGGAAATGGGGATAG 445 Query 417 ATCATGTCACTCACCGGCCCTTCTCTCACGTACTTGCTGAATACGGCAACATCAATGGTG 476 |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| Sbjct 446 ATCATGTCACTCACCGTCCCTTTTCTCACGTACTTGCTGAATACGGCAACATCAATGGTG 505 Query 477 GTGGAAACCTAAACCCTAATCCCTTGAACCAAGCCGGATCTCTTGGACGTAATCACTCGC 536 |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| Sbjct 506 GTGGAAACCTAAACCCTAATCCCTCGAACCAAGCCGGATCTCTTGGACGCAATCACTCGC 565 Query 537 TCAACGATGATGCTCATCAACAACAACAACCTGATGATTCAGGAGATCTCATGTTTCATT 596 |||| ||||||| |||||||||||||| | | ||||||||||||||||||||||||||| Sbjct 566 TCAATGATGATGGTCATCAACAACAAC--C-TAATGATTCAGGAGATCTCATGTTTCATT 622 Query 597 TACAAGCAATCAAGCTTATGACTGAGTCATCAAACCAAGTCAAGCCCGAGTCTACGTTTG 656 |||||||||||||||||||||| || ||||| |||||||||||||| ||||||||||||| Sbjct 623 TACAAGCAATCAAGCTTATGACAGATTCATCGAACCAAGTCAAGCCTGAGTCTACGTTTG 682 Query 657 TGTACGCCTCTTCGTCTTCTTCTAATTCGTCTCCTCCATTATTCTCTTCAACTTGTTCTA 716 ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| Sbjct 683 TGTACGCCTCTTCGTCTTCTTCTAACTCGTCTCCTCCATTGTTCTCTTCAACTTGTTCTA 742 Query 717 CCATTGCTCAGGAGAATTTAGAGGTTAACTTCACTTGGTCTGACTTTCTTCTTGAACAAG 776 |||| ||||||||||||| ||||||||||||||||||||||||||| |||||||| |||| Sbjct 743 CCATAGCTCAGGAGAATTCAGAGGTTAACTTCACTTGGTCTGACTTCCTTCTTGACCAAG 802 Query 777 AAACCTTCCATGAAAACCAACAGAGTCATCCTCAAGAACTAGACAGCTTGTTTGGGAACG 836 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 803 AAACCTTCCATGAAAACCAACAGAATCATCCTCAAGAACTAGACAGCTTGTTTGGGAACG 862 Query 837 ACTTCTCTGAGGCAGCAGCAGC 858 ||||||| |||| | ||||||| Sbjct 863 ACTTCTCCGAGGTAACAGCAGC 884 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41845044451 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5