BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472121
Length=705
Score E
Sequences producing significant alignments: (Bits) Value
AT1G18980.1 | Symbols: | RmlC-like cupins superfamily protein ... 994 0.0
AT1G18970.1 | Symbols: GLP4 | germin-like protein 4 | chr1:6554... 717 0.0
> AT1G18980.1 | Symbols: | RmlC-like cupins superfamily protein
| chr1:6557254-6558045 REVERSE LENGTH=792
Length=792
Score = 994 bits (538), Expect = 0.0
Identities = 627/670 (94%), Gaps = 6/670 (1%)
Strand=Plus/Plus
Query 1 AGCTATGACAACTCTCCAAATCTCTTCTTCACTTTTCAGAT-ATTTCTTTCTAACGCTTT 59
||| ||||| |||||||||||||||||||| |||||||||| |||| |||| | | |
Sbjct 16 AGCCATGACTACTCTCCAAATCTCTTCTTCTCTTTTCAGATCTTTTC-TTCTTGTGATCT 74
Query 60 GTCTCTTCGCAATCCCATCTCTCTCATCTGATTCTGATCCTTTACAAGACTTCTGCGTCG 119
|| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 GTGTCTTTGTAATCCCATCTCTCTCATCTGATTCTGATCCTTTACAAGACTTCTGCGTCG 134
Query 120 GCGATCTCAAAGCTTCCCCTTCCATCAATGGCTTCCCTTGCAAATCATCCGTCTCGGCTT 179
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 135 GCGATCTCAAAGCTTCTCCTTCCATCAATGGCTTCCCTTGCAAATCATCCGTCTCCGCTT 194
Query 180 CTGACTTCTTCTTCTCCGGCTTAGGTGGTCCCTTAAACACCTCGAACGCTAACGGTGT-G 238
||||||||||||||||||||||||||||||| ||||||||||||| | ||||||| || |
Sbjct 195 CTGACTTCTTCTTCTCCGGCTTAGGTGGTCCTTTAAACACCTCGACCCCTAACGGCGTAG 254
Query 239 TCCGTTGCTCCCGCCAACGTCTTAACTTTTCCGGGTCTAAACACTTTAGGACTCTCGATG 298
||||| | |||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 255 -CCGTTTCCCCCGCCAATGTCCTAACTTTTCCGGGTCTAAACACTTTAGGACTCTCGATG 313
Query 299 AACAACGTCGAATTCGCTCCAGGCGGTGTAAATCCGCCTCACTCACATCCGCGTGCAACA 358
|||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 314 AACAACGTTGAATTCGCTCCAGGCGGTGTAAATCCTCCTCACTCGCATCCGCGTGCAACC 373
Query 359 GAAGCAGGAATTGTGATAGAAGGGTCGGTTTTTGTCGGGTTCTTGACTACCAACAACACT 418
||||||||| ||||||| ||||| |||||||||||||||||||||||||| |||||||||
Sbjct 374 GAAGCAGGAGTTGTGATCGAAGGCTCGGTTTTTGTCGGGTTCTTGACTACTAACAACACT 433
Query 419 CTGTTCTCGAAGGTTATACAA-GCCGGAGAGATGTTTGTTGTCCCAAGAGGATTGGTTCA 477
||||||||||||||| | || ||||||||||||||||||||||| ||||||||||||||
Sbjct 434 CTGTTCTCGAAGGTT-TTGAATGCCGGAGAGATGTTTGTTGTCCCTAGAGGATTGGTTCA 492
Query 478 TTTCCAATGGAATGTTGGTAAAGTGAAAGCGCGTTTGATAACCTCTTTCAACAGTCAGCT 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 493 TTTCCAATGGAATGTTGGTAAAGTGAAAGCGCGTTTGATAACCTCTTTCAACAGTCAGCT 552
Query 538 TCCAGGATCAGCTGTTCTGCCTAGTACTCTGTTTGGCTCAAATCCTACGATTCCAAATGC 597
||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 553 TCCAGGATCGGCTGTTCTGCCTAGTACTCTGTTTGGCTCAAACCCTACCATTCCAAATGC 612
Query 598 GGTTTTGACCAAAACGTTTAGGACTGATGATGTTACTGTGAACAAACTCAAGTCCAAGTT 657
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 613 TGTTTTGACCAAAACGTTTAGGACTGATGATGTTACTGTGAACAAACTCAAGTCCAAGTT 672
Query 658 TGCTGTTTGA 667
||||||||||
Sbjct 673 TGCTGTTTGA 682
> AT1G18970.1 | Symbols: GLP4 | germin-like protein 4 | chr1:6554568-6555377
REVERSE LENGTH=810
Length=810
Score = 717 bits (388), Expect = 0.0
Identities = 578/671 (86%), Gaps = 8/671 (1%)
Strand=Plus/Plus
Query 1 AGCTATGACAACTCTCCAAAT-CTCTTCTTCACTTTTCAGATATTTCTTTCTAACGCTTT 59
||||||| | ||||||||||| | ||||| | ||||| |||| |||| |||| | | |||
Sbjct 10 AGCTATGGCTACTCTCCAAATAC-CTTCTGCTCTTTTAAGATCTTTCCTTCTTATGTTTT 68
Query 60 GTCTCTTCGCAATCCCATCTCTCTCATCTGATTCTGATCCTTTACAAGACTTCTGCGTCG 119
||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 69 GTCTCTTTGTAATCCCATCTCTCTCATCTGATTCTGATCCTTTACAAGACTTCTGCGTTG 128
Query 120 GCGATCTCAAAGCTTCCCCTTCCATCAATGGCTTCCCTTGCAAATCATCCGTCTCGGCTT 179
|||||||||||||||| |||||||||||||||| || ||||||||| |||| || ||||
Sbjct 129 GCGATCTCAAAGCTTCTGCTTCCATCAATGGCTTTCCATGCAAATCAGCCGTTTCTGCTT 188
Query 180 CTGACTTCTTCTTCTCCGGCTTAGGTGGTCCCTTAAACACCTCGAACGCTAACGGTGTGT 239
|||||||||||| |||||| |||||||| |||||| |||| || ||| ||||||| ||
Sbjct 189 CTGACTTCTTCTACTCCGGTTTAGGTGGCCCCTTAGACACGTCAAACCCTAACGGAGTAA 248
Query 240 CCGTTGCTCCCGCCAACGTCTTAACTTTTCCGGGTCTAAACACTTTAGGACTCTCGATGA 299
||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||
Sbjct 249 CCGTTGCTCCCGCCAACGTCTTAACCTTCCCGGGTCTAAACACTTTAGGAATCTCGATGA 308
Query 300 ACAACGTCGAATTCGCTCCAGGCGGTGTAAATCCGCCTCACTCACATCCGCGTGCAACAG 359
| ||||| || | |||||||| ||||||||||||||||||| || ||||||||||| |
Sbjct 309 ATAACGTTGAGCTAGCTCCAGGAGGTGTAAATCCGCCTCACTTGCACCCGCGTGCAACCG 368
Query 360 AAGCAGGAATTGTGATAGAAGGGTCGGTTTTTGTCGGGTTCTTGACTACCAACAACACTC 419
||| ||||| |||||| ||||| ||||| |||||||| ||||||| |||||||||||||
Sbjct 369 AAGTAGGAACTGTGATCGAAGGCTCGGTGTTTGTCGGATTCTTGAGTACCAACAACACTT 428
Query 420 TGTTCTCGAAGGTTATACAA-GCCGGAGAGATGTTTGTTGTCCCAAGAGGATTGGTTCAT 478
||||||| || ||| | || || |||||| ||||||| |||| |||||||||||||||
Sbjct 429 TGTTCTCAAAAGTTTTG-AATGCAGGAGAGGCGTTTGTTATCCCTAGAGGATTGGTTCAT 487
Query 479 TTCCAATGGAATGTTGGTAAAGTGAAAGCGCGTTTGATAACCTCTTTCAACAGTCAGCTT 538
||||||||||| ||||| ||||||||||||| |||||||| |||| ||||| |||||
Sbjct 488 TTCCAATGGAACGTTGGCCAAGTGAAAGCGCGAATGATAACCGCTTTTAACAGCCAGCTC 547
Query 539 CCAGGATCAGCTGTTCTGCCTAGTACTCTGTTTGGCTC-AAATCCT-ACGATTCCAAATG 596
|||||| ||| |||| |||||||||||||||| ||||| ||| ||| | ||||||||| |
Sbjct 548 CCAGGAGCAGTTGTTTTGCCTAGTACTCTGTTCGGCTCGAAA-CCTGA-GATTCCAAACG 605
Query 597 CGGTTTTGACCAAAACGTTTAGGACTGATGATGTTACTGTGAACAAACTCAAGTCCAAGT 656
| || |||||| | ||||||||||||||||| |||||| | || |||||||||||||
Sbjct 606 CAGTCCTGACCAGAGCGTTTAGGACTGATGATACAACTGTGCAGAATCTCAAGTCCAAGT 665
Query 657 TTGCTGTTTGA 667
|||||||||||
Sbjct 666 TTGCTGTTTGA 676
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34159219960
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5