BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472122
Length=1678
Score E
Sequences producing significant alignments: (Bits) Value
AT1G18990.1 | Symbols: | Protein of unknown function, DUF593 |... 2638 0.0
AT1G74830.1 | Symbols: | Protein of unknown function, DUF593 |... 169 1e-40
> AT1G18990.1 | Symbols: | Protein of unknown function, DUF593
| chr1:6558678-6560489 REVERSE LENGTH=1732
Length=1732
Score = 2638 bits (1428), Expect = 0.0
Identities = 1601/1684 (95%), Gaps = 13/1684 (1%)
Strand=Plus/Plus
Query 1 TATCTTCGTGATCGCTTCTTGCAATCACAATAATGTCTAACCGTTCCTTCAAGAATTTCA 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 26 TATCTTCGTGATCGCTTTTTGCAATCACAATAATGTCTAACCGTTCCTTCAAGAATTTCA 85
Query 61 TAGAAGAAGAACTTGGAACATTCCCGCAGTTCTTAATCTACGCTCTTCTTGAATGGATCC 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 86 TAGAAGAAGAACTTGGAACATTCCCACAGTTCTTAATCTACGCTCTTCTTGAATGGATCC 145
Query 121 TCATCATTATCCTCTTCATTGATGGCTTCCTTGCTTTCTTCTCTAACCAAATCGCTAAAT 180
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 146 TCATCATTATCCTCTTCATCGATGGCTTCCTCGCTTTCTTCTCTAACCAAATCGCTAAAT 205
Query 181 TCTTTGACCTTAAAATCCCCTGTCTTCTCTGCACTAGACTCGACCATGTTCTTGTCAGAA 240
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 206 TCTTTGACCTCAAAATCCCCTGTCTTCTCTGCACTAGACTCGACCATGTTCTTGTCAGCA 265
Query 241 GAAACCCTGATTTCTATTACAACGACTCGATATGCGATGCTCACAAGAAGAATGTCTCAT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 266 GAAACCCTGATTTCTATTACAACGACTCGATATGCGATGCTCACAAGAAGAATGTCTCAT 325
Query 301 CTCTCGCTTACTGTCATGTTCACAAGAAACTCTCTGAGATCAAACGAATGTGTGAAGGAT 360
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 326 CTCTCGCTTACTGTCATGTGCACAAGAAACTCTCTGAGATCAAACGTATGTGTGAAGGAT 385
Query 361 GTCTTCTTTCTTTCGCCACCGAGAAAGAATCAGATGTTGATACTTACAAGTCTCTTATTG 420
||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 386 GTCTTCTCTCTTTCGCTACCGAGAAAGAAACAGATGTTGATACTTACAAGTCTCTTATTG 445
Query 421 GAATCTTACATAAGGATCTTGAGCTTCTTATCGACGATGAACGTGAGCTTCAATTGGCTT 480
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 446 GAATCTTGCATAAGGATCTTGAGCTTCTTATCGACGATGAACGTGAGCTTCAATTGGCGT 505
Query 481 TTCCAGCTGCGGGTTCGAAGAAAGATGAAAACTTCTATCAGGTTGATCAGAGAACTAACA 540
|||| | ||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 506 TTCCGGTTGCGGGTTCGAAGAAAGATGAAAACTTCTATCAGGTTGAGAACAGAACTAACA 565
Query 541 ATAGCAATGACAGGTTTCACAAACAGCAACGTTGTTCTTGTTGTGGGCAGCTATTGAAGC 600
||||||||||||||||||| | ||||||||||||||||||||||||||| || ||||||
Sbjct 566 ATAGCAATGACAGGTTTCAGAGGCAGCAACGTTGTTCTTGTTGTGGGCAGATAATGAAGC 625
Query 601 TGAAATCCGAAAAACCGAAGAACAATAACCAATCTTTCTTCGCAGCTCCTAGTCCGTCTC 660
|||||||||| ||||| |||| |||||| |||||||| |||| |||||||||||| ||||
Sbjct 626 TGAAATCCGATAAACCTAAGAGCAATAATCAATCTTTTTTCGGAGCTCCTAGTCCATCTC 685
Query 661 CTAGAGTTTCATTCAATCAAAGAACTTTGGATTTGTCTAACATTAAATACACGGATTCAC 720
||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
Sbjct 686 CTAGAGTTTCATTTAACCAAAGAACTTTGGATTTGTCTAACATTAAATACACGGATTTGC 745
Query 721 CCGAGGATGATGATGCTGTT-AACACGAAAGGCGCTTCAG-TGGATTCAGTTGATGACAG 778
| ||||||||||||||| || ||||||||||||||||| | ||||| |||||||||||||
Sbjct 746 CTGAGGATGATGATGCT-TTGAACACGAAAGGCGCTTC-GTTGGATGCAGTTGATGACAG 803
Query 779 AACTCCGAGTTTTGTTAAAGGAGGCAATAAATTCTTTGGCATTCCGCTTTCTGATTCGGC 838
||||||||||||||| |||||||| ||||| ||||||||||||||||||||||| |||||
Sbjct 804 AACTCCGAGTTTTGTAAAAGGAGGTAATAAGTTCTTTGGCATTCCGCTTTCTGACTCGGC 863
Query 839 TCAGAATAGTCCGCGATGGTCTGTTCGATCTATGAAGAAATCTCT-GATTGATCAGAATG 897
|||||||||||||||||||||||||||||| |||||||||||| | | ||||||||||||
Sbjct 864 TCAGAATAGTCCGCGATGGTCTGTTCGATCAATGAAGAAATCTTTCG-TTGATCAGAATG 922
Query 898 GTTCGGAGAGCGAAGTGTTGGATGGAGATTCGATACTTCAGCATCTAAATAGACAGGTTA 957
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 923 GTTTGGAGAGCGAAGTGTTGGATGGAGATTCGATACTTCAGCATCTAAATAGACAGGTTA 982
Query 958 GATTGGACCGTAAGTCATTGATGGATTTGTACATGGAGTTAGACGAAGAGAGGAGTGCTT 1017
||||||| || ||||| |||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 983 GATTGGATCGCAAGTCGTTGATGGATTTGTATATGGAGTTAGATGAAGAGAGGAGTGCTT 1042
Query 1018 CAGCTGTTGCAGCAAACAATGCAATGGCTATGATCACAAGACTTCAAGCCGAGAAAGCTG 1077
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1043 CAGCTGTTGCAGCAAACAATGCAATGGCTATGATCACAAGACTTCAAGCAGAGAAAGCTG 1102
Query 1078 CGGTTCAAATGGAGGCATTGCAGTATCAGAGAATGATGGATGAGCAAGCGGAATATGATC 1137
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1103 CGGTTCAAATGGAGGCATTGCAGTATCAGAGAATGATGGATGAGCAAGCAGAATATGATC 1162
Query 1138 AAGAAGCTTTGCAGTCTATGAATGGCTTGTTGGTTAAGAGAGAAGAGGAAATGAAAGAGC 1197
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1163 AAGAAGCTTTGCAGTCTATGAATGGTTTGTTGGTTAAGAGAGAAGAGGAAATGAAAGAGC 1222
Query 1198 TTGAAGCTGAAATTGAAGTTTATAGATTGAGATATGGATTGTTGAGAGAAG---GAGGAG 1254
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1223 TTGAAGCTGGAATTGAAGTTTATAGATTGAGATATGGATTGTTGAGAGAAGAAAGAGGAG 1282
Query 1255 AAGCAGAAGAGTTTCTTGATGAAGAGACTAAACCGGTCTCAGAATTGCCTGTTTGTTCTT 1314
||||||| ||||||||||||||||| ||||||||||| ||||| ||||||||||||||||
Sbjct 1283 AAGCAGAGGAGTTTCTTGATGAAGAAACTAAACCGGTTTCAGATTTGCCTGTTTGTTCTT 1342
Query 1315 CAAATCATGAAGAAGATTTAGAACAAATGAAAGATTCAGCTGAGGATTCTAAAGCCAACA 1374
||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||| |
Sbjct 1343 CAAATCATGAAGAAGATTTGGAACAAATGAAAGATTCAGCTGAGGATTCTATAGGCAATA 1402
Query 1375 ATGGTGTGATGATCATAGAGGAAGAAAAAGAGAATGGAAGCAGAAAAGATGTGTTAGTGA 1434
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1403 ATGGTGTGATGATTATAGAGGAAGAAAAAGAGAATGGAAGCAGAAAAGATATGTTAGTGA 1462
Query 1435 AGGAAATCTCAGAGATTACAGAGAGACTAAATGCAATTGAATCAAAAGGTGAATTGTTGC 1494
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1463 AGGAAATTTCAGAGATTACAGAGAGACTAAATGCAATTGAATCAAAAGGTGAATTGTTGC 1522
Query 1495 AGCAAATTTCAGATGTTTTAGATGTTAGTGAAGGAGAAGCAATTCTATTACAGATATCTC 1554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1523 AGCAAATTTCAGATGTTTTAGATGTTAGTGAAGGAGAAGCAATTCTATTACAGATATCTC 1582
Query 1555 AAAATCTGCATATGCTTCGTAGTTTCATTGAAATGCCATCAGAATCATGAATCTCTTTAC 1614
| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 1583 AGAATCTGCATATGCTTCGTAGTTTCATTGAAATGCCAACAGAATCATGAATCTGTTT-- 1640
Query 1615 TTACTTAAGATATCAAATCAACATCCTTGTATCAAATCTGTATGTAACTGATACTGACAA 1674
| |||||||| |||||| |||||||||||| || |||||||||||||||||||||||||
Sbjct 1641 T-ACTTAAGAAATCAAAACAACATCCTTGT-TCTAATCTGTATGTAACTGATACTGACAG 1698
Query 1675 TTTT 1678
||||
Sbjct 1699 TTTT 1702
> AT1G74830.1 | Symbols: | Protein of unknown function, DUF593
| chr1:28113423-28115229 REVERSE LENGTH=1711
Length=1711
Score = 169 bits (91), Expect = 1e-40
Identities = 175/216 (81%), Gaps = 4/216 (2%)
Strand=Plus/Plus
Query 1391 AGAGGAAGAAAAAGAGAATGGAAGCAGAAAAGATGTGTTAGTGAAGGAAATCTCAGAGAT 1450
||| |||||||||| || | ||| || ||||| | | |||| || || | ||||||||
Sbjct 1446 AGATGAAGAAAAAGGGAGT-GAA--AGCAAAGAAGGGATAGTAAAAGAGCTTTCAGAGAT 1502
Query 1451 TACAGAGAGACTAAATGCAATTGAATCAAAAGGTGAATTGTTGCAGCAAATTTCAGATGT 1510
||||||||||||| | | || ||||||| ||||| || ||| | || ||| | |||||
Sbjct 1503 CACAGAGAGACTAAGTACTCTTCAATCAAATGGTGATTTATTGAAACACATTGCTGATGT 1562
Query 1511 TTTAGATGTTAGTGAAGGAGAAGCAATTCTATTACAGATATCTCAAAATCTGCATATGCT 1570
||| ||||||||||||||||||||||||||||| ||||||||||| ||| |||| |||||
Sbjct 1563 TTTGGATGTTAGTGAAGGAGAAGCAATTCTATTGCAGATATCTCAGAATTTGCACATGCT 1622
Query 1571 TCGTAGTTTCATTGAAATGCCATCAGAATC-ATGAA 1605
||||||||| ||| ||||| || ||||| |||||
Sbjct 1623 TCGTAGTTTTGTTGCTATGCCTTCTGAATCCATGAA 1658
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82931300340
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5