BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472129
Length=2113
Score E
Sequences producing significant alignments: (Bits) Value
AT1G19090.1 | Symbols: RKF2, CRK1 | receptor-like serine/threon... 3271 0.0
> AT1G19090.1 | Symbols: RKF2, CRK1 | receptor-like serine/threonine
kinase 2 | chr1:6590245-6592816 FORWARD LENGTH=2109
Length=2109
Score = 3271 bits (1771), Expect = 0.0
Identities = 2007/2120 (95%), Gaps = 19/2120 (1%)
Strand=Plus/Plus
Query 1 AGAAACTGAGGATTCATAGATGTTATACTCTATCAAAAATCGCAGATTTGCATATGG-AA 59
|||||| |||||||||| |||||||||||||||||||||| |||||||||||||||| ||
Sbjct 2 AGAAACAGAGGATTCATCGATGTTATACTCTATCAAAAATTGCAGATTTGCATATGGAAA 61
Query 60 GACTTCTTCTTCTTTGTCACGATTCATGATCACGCGCCGTCGGATTTCTGATGCAAATTT 119
|| ||||||| | ||||||||||||||||| || |||| ||||||||||||||||||
Sbjct 62 GA---CTTCTTC--T-TCACGATTCATGATCACACGTCGTCCGATTTCTGATGCAAATTT 115
Query 120 GTGCTTCGATCGCTCAATTCCTCGCTTGGGTTTCATTCCTTGTACTATTAGCGACGGTGG 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 116 GTGCTTCGATCGCTCAATTCCTCGCTTGGGTTTCATTCCTTGTACTATTAGCGACGGTGG 175
Query 180 GCTCTTCTTCTTCTTCGAAATCTCTCCTCAATTGTCATCCTTTAGATCAACACCTTGTAA 239
||||||||||||||||| |||||||||| |||||||| ||||||||||| ||||||||||
Sbjct 176 GCTCTTCTTCTTCTTCGGAATCTCTCCTAAATTGTCAACCTTTAGATCACCACCTTGTAA 235
Query 240 ACCCTAGTCGTCAGCTTGATTTCCTCAGAGCAATGTCTTCCGTCAATGATTACATTACCG 299
|||||||||||| ||||| |||||||||||||||||||||||||||||||| ||| |||
Sbjct 236 ACCCTAGTCGTCTGCTTGGTTTCCTCAGAGCAATGTCTTCCGTCAATGATTTCATAACC- 294
Query 300 AA-GACAAGCTCTGGGTCGTTTCTTCCATCACCGATCTATCTCCACCCATCTATGTGTTT 358
|| |||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 295 AACGACAAGCTTTGGGTCGTTTCTTCCATCACCGATGTATCTCCACCTATCTATGTGTTT 354
Query 359 CTACAGTGCCGCGAAGATCTCTCTGTTTCCGATTGTCGACATTGCTTCAACGAGAGCAGA 418
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 CTACAGTGCAGAGAAGATCTCTCTGTTTCCGATTGTCGACATTGCTTCAACGAGAGCAGA 414
Query 419 TTGGAGCTCGAGAGAAAATGTTCGGGTTCCGGTGGTCGAATTCATAGTGATGGATGCTTC 478
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 415 TTGGAGCTCGAGAGAAAATGTTCGGGTTCCGGTGGTCGAATCCATAGTGATAGATGCTTC 474
Query 479 TTACGGTTTGATGATCGAGATTTCTCAGAGGAGTTTGTTGATCCTAGATTTGATAGAGCC 538
|||||||||||||||||||||||||| ||||| ||||||||||||| |||||||| |||
Sbjct 475 TTACGGTTTGATGATCGAGATTTCTCTGAGGAATTTGTTGATCCTACATTTGATAAAGCT 534
Query 539 AAATGTGAGGAAACAGAGCCAGGGTTTGGAGATTTTTGGAAATATCTTGATGAGGCTTTG 598
|| ||||||||||||| | ||||||||||||| ||||||| || ||||||||||||||||
Sbjct 535 AACTGTGAGGAAACAGGGACAGGGTTTGGAGAATTTTGGAGATTTCTTGATGAGGCTTTG 594
Query 599 GTGAATGTAACCTTAAAGGCTGTTAAAAATGGAGGGTTTGGTGCAGCTGCTGTGACTAGA 658
||||||||||| |||||||||||||||||||||||||||||||||||| | |||| || |
Sbjct 595 GTGAATGTAACTTTAAAGGCTGTTAAAAATGGAGGGTTTGGTGCAGCTTCAGTGATTAAA 654
Query 659 GCCGAGGCGGTGTATGCATTGGCTCAGTGTTGGCAAACACTTGATGAGAACTCGTGTCGA 718
||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 655 ACCGAGGCCGTGTATGCATTGGCTCAGTGTTGGCAAACACTTGATGAGAACACGTGTCGA 714
Query 719 GAGTGTTTGGTTAATGCTAGATCGAGCTTGAGAGCTTGTGGTGGACATGAGGCTAGCGCT 778
|||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||
Sbjct 715 GAGTGTTTGGTTAATGCTAGATCGAGCTTGAGAGCTTGTGATGGACATGAAGCTAGAGCT 774
Query 779 TTCTTTACAGGGTGTTACTTGAAGTATTCTACACACAAGTTCTTTGATGATGCTGCAGAA 838
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 TTTTTTACTGGGTGTTACTTGAAGTATTCTACACACAAGTTCTTTGATGATGCTGCAGAA 834
Query 839 CATAAACCTGACGATGATCAGAGAAACTTTATAAGGTCATCGCTTTTTCCACATTTGAGT 898
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 835 CATAAACCTGACGCTGATCAGAGAAACTTTATAAGGTCATCGTTTTTTCCACATTTGAGT 894
Query 899 GATCATGATATTACGAAATTAGCAATAGCTGCGATTTCGTTGTCTTTTCTTACTTCTCTT 958
|||| |||| |||||| ||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 895 GATCGTGATGTTACGAGATTAGCAATTGCTGCGATTTCGTTGTCGATTCTTACTTCTCTT 954
Query 959 GGTGCCTTTATCAGTTACAGACGGGTTTCAAGGAAAAGAAAAGCTCAAGTTCCATCGTGT 1018
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 GGAGCCTTTATCAGTTACAGACGGGTTTCAAGGAAAAGAAAAGCTCAAGTTCCATCGTGT 1014
Query 1019 -TCAAATTTCAAATACGAGACGCTTGAGAAGGCGACCGAGTCTTTCCATGACTCTTTGAA 1077
| ||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||
Sbjct 1015 GT-AAATTTCAAATACGAGATGCTTGAGAAAGCGACCGAGTCTTTCCATGACTCTATGAA 1073
Query 1078 ACTAGGCCAAGGAGGGGCCGTCAAAAAGCTCTTCTTCAACACACGTGAATGGGCGGATCA 1137
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1074 ACTAGGCCAAGGAGGGGCCGTCAAAAAGCTCTTCTTTAACACACGTGAATGGGCAGATCA 1133
Query 1138 GTTCTTCAACGAAGTGAATTTGATCAGCAGAGTTCAACACAAGAACCTTGTGAGACTACT 1197
|||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1134 ATTCTTCAACGAAGTGAATCTGATCAGCGGAGTTCAACACAAGAACCTTGTGAGACTACT 1193
Query 1198 TGGTTGCAGCATTGAAGGTCCCAAAAGTCTTCTTGTCTATGAATATGTTCATAATAGAAG 1257
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1194 TGGTTGCAGCATTGAAGGTCCCAAAAGTCTTCTTGTCTATGAATATGTTCATAACAGAAG 1253
Query 1258 CCTTGATCAAATCCTTTTCATGAAGAATACAGTCCATATTTTGAGCTGGAAGCAACGGTT 1317
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1254 CCTTGATCAAATCCTTTTCATGAAGAACACAGTCCATATTTTGAGCTGGAAGCAACGGTT 1313
Query 1318 TAACATCATTATAGGAATTTCAGAAGGTCTAGAATACCTTCACGGAGGATCTGAAGTAAA 1377
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 1314 TAACATCATTATAGGAATATCAGAAGGTCTAGAATACCTTCACAGAGGATCTGAAGTAAA 1373
Query 1378 AATCATCCATAGAGACATCAAAACCAGCAATATTCTCCTTGATCGAAACCTAAGTCCCAA 1437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1374 AATCATCCATAGAGACATCAAAACCAGCAATATTCTCCTTGATCGAAACCTAAGTCCCAA 1433
Query 1438 AATAGCAGATTTTGGACTCATACGTTCAATGGGCACTGACAAAACGCAAACCAATACTGG 1497
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1434 AATAGCTGATTTTGGACTCATACGTTCCATGGGCACTGACAAAACGCAAACCAATACTGG 1493
Query 1498 AATTGCTGGAACACTTGGTTATTTGGCTCCTGAATATCTTATCAAAGGCCAATTAACAGA 1557
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 1494 AATTGCTGGAACACTTGGTTATCTGGCTCCTGAATATCTGATCAAAGGCCAATTAACAGA 1553
Query 1558 GAAAGCTGACGTTTACGCATTCGGAGTTCTTATAATCGAGATAGCTA-CTGGAAAGAAAA 1616
||||||||||||||||||||| ||||||||||| |||||||||| || |||| |||||||
Sbjct 1554 GAAAGCTGACGTTTACGCATTTGGAGTTCTTATCATCGAGATAG-TAACTGGCAAGAAAA 1612
Query 1617 ACAACGCATTCACGCAAGGCACTAGCTCGGTTTTATACTCTGTATGGGAGCATTTTAAAG 1676
| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1613 ATAACGCATTCACGCAAGGAACTAGCTCGGTTTTATACTCTGTATGGGAACATTTTAAAG 1672
Query 1677 CAAGCACTTTAGATCGCTCGATCGATCCTCGGTTGAAAGGGAGTTTC-TCAGAGGAAGAG 1735
||| ||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||
Sbjct 1673 CAAACACTTTAGATCGCTCTATCGATCCTCGGTTGAAAGGGAGTTTCGT-AGAGGAAGAG 1731
Query 1736 GCCTTGAAGGTTCTCCAAATCGGATTGTTGTGTGTTCAATCTTCAGTAGAATTAAGACCG 1795
|||||||||||||| ||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct 1732 GCCTTGAAGGTTCTTCAAATCGGATTGTTGTGTGTTCAATCTTCTGTAGAGTTGAGACCG 1791
Query 1796 TCAATGTCTGAGATAGTCTTCATGTTAAAGAACAAAGATAGTAAATTTGAATGTCCGAAA 1855
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 1792 TCAATGTCTGAGATAGTCTTCATGTTACAGAACAAAGATAGTAAATTTGAATATCCGAAA 1851
Query 1856 CAGCCTCCGTTCTTGAGTGCCAGTGTTCTAATGCCAGATGAGGAGACTAAAGTCTGATAT 1915
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1852 CAGCCTCCGTTCTTGAGTGCCAGTGTTCTAATGCCAGATGAGGAGACTAGAGTCTGATAT 1911
Query 1916 TATCAGTTTCTTAGGATT-TATATTGTTCTTCTGTAAATGCTCAAAGAGGGATTTTACAC 1974
|||||||||||||||||| | || |||||||||||||||||||||| | |||||||||||
Sbjct 1912 TATCAGTTTCTTAGGATTGT-TAATGTTCTTCTGTAAATGCTCAAAAATGGATTTTACAC 1970
Query 1975 CACT-CTTTCTCCTTTTCAAATCTTTTATCTGTTCATATTTTATTATGAAGGTCAACAAA 2033
|| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1971 CATTTCTTTCTCCTTTTCAAATCTTTTATC-GTTCATATTTTATTATGAAGGTCAACAAA 2029
Query 2034 AATGGAACCAAGGCTAGATTCTAAAAGTTTTGATTCGCTTACATCATTATTCTTTTTACA 2093
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 2030 AATGGAACCAAGGCTAGATTCTAAAAGTTTTGATTCGTTTACATCATTATTCATTTTACA 2089
Query 2094 ATCTAAAAGATGCGAGTTAT 2113
||||||| ||| |||||||
Sbjct 2090 ATCTAAATCATGTGAGTTAT 2109
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104768537415
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5