BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472130
Length=2555
Score E
Sequences producing significant alignments: (Bits) Value
AT1G19100.1 | Symbols: | Histidine kinase-, DNA gyrase B-, and... 3792 0.0
AT3G44480.1 | Symbols: RPP1, cog1 | Disease resistance protein ... 60.2 9e-08
> AT1G19100.1 | Symbols: | Histidine kinase-, DNA gyrase B-, and
HSP90-like ATPase family protein | chr1:6594930-6601355 FORWARD
LENGTH=2596
Length=2596
Score = 3792 bits (2053), Expect = 0.0
Identities = 2429/2601 (93%), Gaps = 63/2601 (2%)
Strand=Plus/Plus
Query 1 tcctctcctttctctcaacctctccgcctccgattccgtcctatctctc-tccaccgcct 59
|||||||||||||||||||||||||||||| ||||||| |||||||| | | ||||||||
Sbjct 9 TCCTCTCCTTTCTCTCAACCTCTCCGCCTCGGATTCCGCCCTATCTCCCTTTCACCGCCT 68
Query 60 cagattc-tctctctctctctctcAGTGTTTTCATTTATCAATTTCACTCTCCTTGTCGT 118
||||||| |||||||||||||||| ||| || ||| |||||||||||||||||||
Sbjct 69 CAGATTCGACTCTCTCTCTCTCTCACAAATTT--TTGATCTATTTCACTCTCCTTGTCGT 126
Query 119 GGCTTTGTTTTAACCGGAACTTTGTTCCGGCAGCTACCCAAGACCTCACTCCTCGAC--- 175
||||||||||| |||||||| || |||||||||||||||||||||||||||||||||
Sbjct 127 GGCTTTGTTTTGACCGGAACATTATTCCGGCAGCTACCCAAGACCTCACTCCTCGACTAT 186
Query 176 ---GATT--T-G--G----T-T-TC--C-TC--A--AAAAA-TTCATCAAAGAGTGCTAG 213
| || | | | | | || | | | ||||| || | ||||||||| |||
Sbjct 187 TTAGTTTCCTCGCTGTCACTATCTCAACGCCGGAGGAAAAACTTAAACAAAGAGTGATAG 246
Query 214 GTCGAAGTGACACTGGTGTTGTAA----T-----C----GAAGTCCTAAGAGTAGCGTCA 260
||||||||||||| |||||||||| | | |||| |||||||||| ||||
Sbjct 247 GTCGAAGTGACACCGGTGTTGTAATCGGTAAACCCAGAAGAAGCCCTAAGAGTACCGTCG 306
Query 261 ATTTCTCTGCTCTTATCTTCTTCTACTCTATCTACATCGCGCACATTGTACAAAGGAAAG 320
|||| | ||||||||||||||||| ||| ||||| |||||||||||||||| ||||||
Sbjct 307 ATTTTTGTGCTCTTATCTTCTTCTGCTCAATCTATTTCGCGCACATTGTACAGTGGAAAG 366
Query 321 TAACAGTCGCTTTGCATGAGCCTAATTTTCAGATAAACAAAGATGAGTTTCAACACAAGT 380
||||||| ||||||||||||||| |||||||||||||||||||||||| | | | ||||
Sbjct 367 TAACAGTAGCTTTGCATGAGCCTGATTTTCAGATAAACAAAGATGAGTCACGATAGAAGT 426
Query 381 ATTAACGTTTCGCATGATGCTGTGGA-TGTTAAACCCGAGCGTGGCACTATGCTTCAGAG 439
|||||||||||||||||||||| || || ||||||||||||||||||||||||||||||
Sbjct 427 GTTAACGTTTCGCATGATGCTGT-GATTGCTAAACCCGAGCGTGGCACTATGCTTCAGAG 485
Query 440 CTTCTCACCCAGAAGCCATGGTTCCAAAGGATATTCTCTACCTCAAGATTCAGAAGAGAA 499
||||||||| || ||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 486 CTTCTCACCTAGGAGCCATGGTTCTAAAGGATATTCTCTACCTCAAGATTCAGAAGAAAA 545
Query 500 TAGAGGATCAGTCGGTCAAAGTGCTGGGCAGAGTAGCACTAGTGTGGTTGATCAGGTCCG 559
||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 546 TAGAGGATCAGTCGGCCAAAGTGCTGGTCAGAGTAGCACTAGTGTCGTTGATCAGGTCCG 605
Query 560 GTCGCCAGCTGATGATGCTGGTGTCACTTCTTCATCCACCATATGTCCAGCTCCTGTTTG 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 606 GTCGCCAGCTGATGATGCTGGTGTCACTTCTTCATCCACCATATGTCCAGCTCCTGTTTG 665
Query 620 TAGGCAATTCTGGAAAGCTGGAAACTATAATGATGAATTGAGTTCAAAGTCTCAGCAGCC 679
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 666 TAGGCAATTTTGGAAAGCTGGAAGCTATAATGATGAATTGAGTTCAAAGTCTCAGCAGCC 725
Query 680 AAATGGAAAAAATTATCTTCATGTGCACCCTATGTTCCTTCACTCCAATGCTACTTCACA 739
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 726 AAATGGAAAAAATTATCTTCATGTGCACCCTATGTTCCTTCACTCCAATGCTACCTCACA 785
Query 740 TAAATGGGCATTTGGGGCTGTTGCTGAACTGCTTGACAATGCTGTTGATGAGATCCAAAA 799
||||||||| ||||| |||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 786 TAAATGGGCTTTTGGAGCTGTTGCAGAATTGCTTGACAATGCTGTTGATGAGATCCAAAA 845
Query 800 TGGGGCCACTTTTGTCATTGTAGATAAAACCACAAATCCAAGGGATGGTACAACAGCATT 859
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 846 TGGGGCCACTTTTGTCATTGTAGATAAAACCACAAATCCAAGGGATGGTGCAACAGCTTT 905
Query 860 GCTAATTCAAGATGATGGTGGTGGGATGGATCCTCAGGCAATGCGGCATTGCATGGGTTT 919
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 906 GCTAATTCAAGATGATGGTGGTGGGATGGATCCTCAGGCAATGCGGCATTGTATGGGTTT 965
Query 920 TGGATTCTCAGATAAAAAGTCGGATTCAGCCATTGGAAGATATGGAAATGGTTTCAAGAC 979
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 966 TGGATTCTCAGATAAAAAGTCGGATTCAGCCATTGGAAGATATGGAAATGGTTTCAAGAC 1025
Query 980 CAGCACAATGAGACTTGGGGCAGATGTCATCGTTTTCAGCCGCCATTCGAAGAACCAAAC 1039
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1026 CAGCACAATGAGACTTGGGGCAGATGTCATCGTCTTCAGCCGCCATTCGAAGAACCAAAC 1085
Query 1040 ATTGACACAGAGTATCGGGCTTCTTTCTTATACATACCTGACACGTACTGGCCATGATAG 1099
||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1086 ATTGACACAAAGTATCGGGCTCCTTTCTTATACATACCTGACACGTACAGGCCATGATAG 1145
Query 1100 AATAGTTGTTCCCATTTTGGATTACGAGTTTAAGGCATCAGCTGGCGAGTTCAAGCCATT 1159
||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||
Sbjct 1146 AATAGTTGTTCCCATTTTGGATTACGAGTTTAATGCTTCAGCTGGCGAGTTCAAGACATT 1205
Query 1160 GCAAGACCGAGAACATTTTATATCCAGTCTCTCCATTCTACTAGAATGGTCTCCATTTTC 1219
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1206 GCAAGACCGAGAACATTTTATATCCAGTCTCTCTATTCTACTAGAATGGTCTCCATTTTC 1265
Query 1220 AACAGAGGCAGAACTTTTGCAGCAGTTTGACGATGTTGGACCACATGGGACAAAGGTTAT 1279
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1266 AACAGAAGCAGAACTTTTGCAGCAGTTTGATGATGTTGGACCACATGGGACAAAGGTTAT 1325
Query 1280 CATCTATAATATGTGGCTCAACAGTGATGCTAAATTGGAATTAGACTTTGATTCGGTTGC 1339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1326 CATCTATAATATGTGGCTCAACAGTGATGCTAAATTGGAATTAGACTTTGATTCGGTTGC 1385
Query 1340 AGAGGATATTCTCATTGAAGGAAGCATaaaaaaaaCTGGATCTAAGATTGTGAATGATCA 1399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1386 AGAGGATATTCTCATTGAAGGAAGCATAAAAAAAACTGGATCTAAGATTGTGAATGATCA 1445
Query 1400 TATTGCAAGCCGGTTTTCTTACTCTCTTCGTGTTTACCTATCCATATTATACTTGCGAAT 1459
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1446 TATTGCCAGCCGGTTTTCTTACTCTCTTCGTGTTTACCTATCTATATTATACTTGCGGAT 1505
Query 1460 TCCTGAGACTTTCAAGATAATTTTGCGTGGTAAGGTTGTCGAACATCATAACGTTGCTGA 1519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1506 TCCTGAGACTTTCAAGATAATTTTGCGTGGTAAGGTTGTCGAACATCATAACGTTGCTGA 1565
Query 1520 TGATCTCATGCATCCGCAGTACATCTTGTATAAGCCTCAGGCTGCTGGATCTGAAGAGGC 1579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1566 TGATCTCATGCATCCGCAGTACATCTTGTATAAGCCTCAGGCTGCTGGATCTGAAGAGGC 1625
Query 1580 TGTAGTTGTAACGACGATTGGATTTCTGAAGGAAGCTCCCAAAGTAAATCTTCATGGTTT 1639
| |||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||
Sbjct 1626 TTTAGTTGTAACGACGATTGGATTTCTGAAAGAAGCTCCCAAAGTAAATCTTCACGGGTT 1685
Query 1640 CTGCGTTTATCACAAAAACCGCCTTATTATGCCATTTTGGCAGGTCATAAGCTATTCAAG 1699
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1686 CTGCGTTTATCACAAAAACCGCCTTATTATGCCATTTTGGCAGGTCATAAATTATTCAAG 1745
Query 1700 CAGTCGAGGAAGAGGGGTTGTTGGTGTTCTAGAAGCTAATTTTGTTGAGCCAACCCATAA 1759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1746 CAGTCGAGGAAGAGGGGTTGTTGGTGTTCTAGAAGCTAATTTTGTTGAGCCAACCCATAA 1805
Query 1760 CAAGCAGGATTTTGAGAAAACTGTTCTTCTTCAGAAGCTTGAAAACCGTTTGAAGGAAAT 1819
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1806 CAAGCAGGATTTTGAGAAAACTGTTCTTCTTCAGAAGCTTGAAAACCGTTTAAAGGAAAT 1865
Query 1820 GACAGTGGAGTATTGGAGCTGCCATTGTGTGTTGATTGGGTATCAAGTAAATAAGAAGCC 1879
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1866 GACGGTGGAGTATTGGAGCTGCCATTGTGTGTTGATTGGGTATCAAGTAAATAAGAAGCC 1925
Query 1880 TCGTCTTCAGATACCTCAGAATGTTCAACCTGCTGGTAGACAAGCATTAAGTCCTCTTCC 1939
|||||||||||||||||| || ||||||||||| |||||||||||||||||||||| |||
Sbjct 1926 TCGTCTTCAGATACCTCAAAAAGTTCAACCTGCCGGTAGACAAGCATTAAGTCCTCCTCC 1985
Query 1940 AGGCTTCCAAGCAGTTTTTCCACAAGGAAATTCAACATCTCTCCCTAGATTTTCAGCTAA 1999
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| || |
Sbjct 1986 AGGCTTCCAAGCAGTTTTTCCACAAGGAAATACAACATCTCTCCCTAGAGTTTCAACTCA 2045
Query 2000 GCCAGTGCTGTTGGAAAAAAGGAAAGAACATCCTGATTCTGTTGCAAGTGCAGCGTCAAA 2059
||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||
Sbjct 2046 GCCAGTGCTGTTGGAGAAGAGGAAAGAACATCCTGATTCTGTTGCAAGTGCAGCGTTAAA 2105
Query 2060 AAGAAAGGTTGGGAATGATGGCTTTACTGTCCCGGGGCAGAATCGGGTTGAACAGTTTAT 2119
|||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||
Sbjct 2106 AAGAAAGGTTGGGAATGATGACTTTACTGTCCCGGGGCATATTCGGGTTGAACAGTTTAT 2165
Query 2120 TCATGGATCTGCAAGTCAGTCACAAGATATTGAAACTGTCAAGTTGATGGaaaaaaaCAA 2179
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2166 TCATGGATCAGCAAGTCAGTCACAAGATATTGAAACTGTCAAGTTGATGGAAGAAAACAA 2225
Query 2180 GAATCTCCGAGCAAAATGTTTGGACCACAAGGTGCGAAGTCAGAACCTTGAAGTCAAGGC 2239
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2226 GAAGCTCCGAGCAAAATGTTTGGACCGCAAGGTGCGAAGTCAGAACCTTGAAGTCAAGGC 2285
Query 2240 CATGAATCTTAGGAGTGAGCTCGAGAACGT-TAAAAGTGAGTATGAAAGGTTAATGGTAG 2298
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 2286 CATGAATCTTAGGAGTGAGCTCGAGAAC-TATAAAAGTGAGTATGAAAGGTTAATGGTAG 2344
Query 2299 AGCTACAAGCTTTGGATTTGGTGAAAGGCGAGCACAGAAGAAATGTAAATACGTAGAAAC 2358
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2345 AGCTACAAGCTTTGGATTTGGTGAAAGACGAGCACAGAAGAAATGTAAATACGTAGAAAC 2404
Query 2359 TTTCTCTGCACTTTAAAAACCACTCTTTTT-GGCTGGTCATATCCATCTTCTAGGTATGA 2417
|| |||||||||| ||||| |||||||||| |||||||| ||||||||||||||||||||
Sbjct 2405 TTCCTCTGCACTTAAAAAAACACTCTTTTTTGGCTGGTCGTATCCATCTTCTAGGTATGA 2464
Query 2418 AAACTAGAGGAGATCCTTAGTTTAT---CTCTACTAATGGAAAGACAAAACAAAATTTGa 2474
||||||||| | |||||||||||| || | || |||||||||||||||||| ||
Sbjct 2465 AAACTAGAG-A--TCCTTAGTTTATGGGCTGT-CTC--GGAAAGACAAAACAAAATGTGT 2518
Query 2475 aaaaaaaaaaCAGGATTCAAATGTTTATGAATCTTTTTGTCTAGAAGACTCGGCAAAGTT 2534
||||| ||||||||| ||||||||||||||||||||||||||| || ||||||||
Sbjct 2519 AAAAA-----CAGGATTCA--TGTTTATGAATCTTTTTGTCTAGAAGATTCAGCAAAGTT 2571
Query 2535 ATGGAAAATATCTAAATTTCT 2555
||||||||||| ||| |||||
Sbjct 2572 ATGGAAAATATATAACTTTCT 2592
> AT3G44480.1 | Symbols: RPP1, cog1 | Disease resistance protein
(TIR-NBS-LRR class) family | chr3:16090564-16096359 REVERSE
LENGTH=4038
Length=4038
Score = 60.2 bits (32), Expect = 9e-08
Identities = 34/35 (97%), Gaps = 0/35 (0%)
Strand=Plus/Plus
Query 1834 GGAGCTGCCATTGTGTGTTGATTGGGTATCAAGTA 1868
|||||| ||||||||||||||||||||||||||||
Sbjct 3735 GGAGCTTCCATTGTGTGTTGATTGGGTATCAAGTA 3769
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 126822031904
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5