BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472131
Length=2532
Score E
Sequences producing significant alignments: (Bits) Value
AT1G19110.1 | Symbols: | inter-alpha-trypsin inhibitor heavy c... 4060 0.0
> AT1G19110.1 | Symbols: | inter-alpha-trypsin inhibitor heavy
chain-related | chr1:6602126-6605908 FORWARD LENGTH=2551
Length=2551
Score = 4060 bits (2198), Expect = 0.0
Identities = 2430/2541 (96%), Gaps = 20/2541 (1%)
Strand=Plus/Plus
Query 1 TGTCTGAAGAAAGAAACCGAATCGATTCAA-TTCAACGTCTCGTCCATCGATTTTCGTTT 59
|||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||
Sbjct 12 TGTCTGAAGAAAGAAACCGAATCGATTCAATTTCAACGTCTCGTCCTTCAATTTTCGTTT 71
Query 60 TCCCGAGAAAATTTAGGAAAG--A-A-AAAGAGAGGGCAGAGACAACATTTTCTTCGCCG 115
| ||||||||||||||||||| | | ||||||||||||||||||| | |||||||||||
Sbjct 72 T-CCGAGAAAATTTAGGAAAGAAAGAGAAAGAGAGGGCAGAGACAAAAATTTCTTCGCCG 130
Query 116 TCTGAGTGGGAAAGATGGCGGAGGATTTCGCTAGAGCCGTCGACGATGGGCTTAAACTCG 175
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 131 TCTGAGTGGGAAAGATGGCGGAGGATTTCGCTAGAGCGGTAGACGATGGGCTTAAACTCG 190
Query 176 CGAAACGGATTTATTTCGGCAAAGACCGAGCCGTTGCGGCGCCGAGACCACCAGCTCCGA 235
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 191 CGAAACGGATTTATTTCGGCAAAGACCGAGCCGTTGCGGCGCCGAGACCACCTGCTCCGA 250
Query 236 TGGAGAGATCTTCCACGACGCAGCCTTACCTTCCTACGGCACCTATGGTTTACGCTGTTA 295
|||| ||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 251 TGGACAGATCTTCCACTACGCAGCCTTACCTTCCTACAGCACCTATGGTTTACGCCGTTA 310
Query 296 TACCCGACCCGGGAATTGTGGATAACCCGGATTTGCCTAGCTACCAGCCTCACGTGCACG 355
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 311 TACCCGACCCGGGAATTGTGGATAACCCGGATTTGCCTAGCTATCAGCCTCACGTGCACG 370
Query 356 GCAGGTGCGACCCACCGGCTTTGATTCCTCTGCAGATGAATTCGATTGAGCTTGAGGTTG 415
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 371 GCAGGTGCGACCCACCGGCTTTGATTCCTCTGCAGATGAATTCGATTGAGCTGGATGTTG 430
Query 416 ATTGTTATCTCGACACGGCTCTTGTTACCGTCACCGGATCGTGGCGTGTTCATTGTGTTA 475
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 431 ATTGTTATCTCGACACGGCTCTTGTTACTGTCACCGGATCGTGGCGGGTTCATTGTGTTA 490
Query 476 TGGGAAGCAAGAGATGTGATTGCCGAATTGCAATTCCCATGGGAGAACAGGTCTGTTCAA 535
||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||
Sbjct 491 TGGGAAGCAAGAGATGTGATTGCCGAATTGCTATTCCCATGGGAGAACAGG---GATCAA 547
Query 536 TTCTAGGTGTTGAGGTTGAGATTCCTAGAAAATCTTACACAACGCAGTTGATCACAGCCG 595
| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 548 TACTAGGTGTTGAGGTTGAGATTCCTAGAAAATCGTACACAACGCAGTTGATCACAGCAG 607
Query 596 AAGATGGAAACGAATTCGAGAAAACGGCACTACCTGAAACTGGAGGCTTCTTGAAACCAA 655
|||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||| |
Sbjct 608 AAGATGGAAACGAATTTGAGAAAACGGCACTACCTGAAACTGGTGGCTTTTTGAAACCTA 667
Query 656 ACATATTCACTCTTAC-AGTACCACAGGTTGATGGAGGTACCAACCTCTCTATCAAGATG 714
|||| ||||||||||| | ||||||||||||||||||||||||| |||||||||||||||
Sbjct 668 ACATTTTCACTCTTACTA-TACCACAGGTTGATGGAGGTACCAATCTCTCTATCAAGATG 726
Query 715 ACTTGGTCTCAGAAGTTGACGTATAACGAAGGGCAATTTTTTCTCGATATTCCTTTCAAC 774
||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||
Sbjct 727 ACTTGGTCTCAGAAGTTGACGTATAACCAAGGGCAGTTTTTTCTTGATATTCCTTTCAAC 786
Query 775 TTTCCTGAGTATGTGACTCCTGCGGTAAAGAAAATCTCAAAGAGAGAAAAGATATACTTG 834
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 787 TTTCCTGAGTATGTGACTCCTGCGGTAAAGAAAATCTCAAAAAGAGAAAAGATTTACTTG 846
Query 835 AGTGTTAATGCTGGTACTGGAACAGAAGTTCTCTGCAAAGGATGCAGTCATCAATTAAAG 894
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 847 AGTGTTAATGCTGGTACTGGAACAGAAGTTCTCTGCAAAGGATGCAGTCATCAACTAAAG 906
Query 895 GAGAAATTGCGAAGTGCAGGGAAGTTGAGGTTTGCATATGAAGCAGATGTTTTGAAGTGG 954
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 907 GAGAAATTGCGGAGTGCAGGGAAGTTGAGGTTTGCATATGAAGCAGATGTTTTGAAGTGG 966
Query 955 TCGAACACAGACTTTAGTTTTTCTTATACGGCCTCCTCAAGTAATATAGTTGGTGGACTT 1014
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 967 TCGAACACTGACTTTAGCTTTTCTTATACGGCCTCCTCAAGTAATATAGTTGGTGGACTT 1026
Query 1015 TTCCTTCAATCTGCCCCTGTTCACGATGTTGATCAGAGAGACATATTTTCTTTCTATCTT 1074
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1027 TTCCTTCAATCTGCGCCTGTTCACGATGTTGATCAGAGGGACATATTTTCTTTCTATCTT 1086
Query 1075 TTTCCAGGAAAGCAGCAAAAAACTAAGGCATTTAAGCGAGAGGTGGTATTTGTTGTTGAC 1134
|||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||
Sbjct 1087 TTTCCAGGAAAGCAGCAAAAAACTAAGGCATTCAAGCGGGAGGTAGTATTTGTTGTTGAC 1146
Query 1135 ATAAGTAAAAGCATGACTGGAAAACCTCTTGAGGATGTAAACAATGCGATATCCACAGCT 1194
||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||||
Sbjct 1147 ATAAGTAAAAGTATGACTGGAAAACCTCTCGAGGATGTAAAAAATGCGATATCTACAGCT 1206
Query 1195 CTATCTAAGCTTAATCCTGGAGATTCCTTCAATATTATCACTTTCAGCGATGATACTTCT 1254
|||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||| ||
Sbjct 1207 CTATCTAAGCTTGATCCTGGAGATTCTTTCAATATTATCACTTTCAGCAATGATACTGCT 1266
Query 1255 CTGTTTTCGACATCGATGGAGTCGGTCACTTCCGATGCTGTTGAAAGAGGCATTGAGTGG 1314
|| ||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1267 CTATTTTCGACATCAATGGAGTCAGTCACTTCTGATGCTGTTGAAAGAGGCATTGAGTGG 1326
Query 1315 ATGAACAAGAACTTTGTTGTCGCAGATGGTACAAACATGCTCCCTCCCCTAGAGAAGGCT 1374
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1327 ATGAACAAGAACTTTGTCGTCGCAGATGGTACAAACATGCTCCCTCCCCTAGAGAAGGCT 1386
Query 1375 GTGGAAATGCTTTCGAATACTCGTGGCTCTATTCCTATGATCTTCTTCGTAACAGATGGG 1434
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1387 GTGGAAATGCTTTCAAATACTCGTGGCTCTATTCCTATGATCTTCTTCGTAACAGATGGG 1446
Query 1435 TCTGTTGAAGATGAGAGACACATTTGTGATGTAATGAAGAAACATCTAGCTAGTGCTGGA 1494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1447 TCTGTTGAAGATGAGAGACACATTTGTGATGTAATGAAGAAACATCTAGCTAGTGCTGGA 1506
Query 1495 TCAGTGTGTCCACGGATACACACTTTTGGGTTAGGTATATTCTGTAATCACTACTTCCTG 1554
||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1507 TCAGTGTTTCCTCGGATACACACTTTTGGGTTAGGTGTATTCTGTAATCACTACTTCCTG 1566
Query 1555 CAAATGCTTGCAAATCTATCCTGTGGCCAGCACGAATCAGTTTATAATACAGATCACATC 1614
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1567 CAAATGCTTGCAAATATATCCTGTGGCCAGCACGAATCAGTTTATAATACAGATCACATT 1626
Query 1615 GAGGAACGAATGGACAAACTGTTTACAAAGGCTTTATCTACCATCCTTGTTAATATAACA 1674
|||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||| ||
Sbjct 1627 GAGGAAAGAATGGACAAACTGTTTACAAAGGCTTTATCCACCATTCTTGTTAATATAGCA 1686
Query 1675 ATTGAGCCCCTTCAGAGTCTAGATGAAGTTGAGGTATACCCTTCGAATATTCCGGATCTG 1734
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1687 ATTGAGCCCCTTCAGAGTCTAGATGAAGTTGAGGTATACCCTTCAAATATTCCGGATCTG 1746
Query 1735 ACATCTGCAAGTCCATTGATGATATATGGAAGATACCGAGGAAAGTTCCCCGAGAATGTG 1794
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1747 ACGTCTGCAAGTCCATTGATGATATATGGAAGATACCGAGGAAAGTTCCCCGAGAATGTG 1806
Query 1795 ATAGCCAAAGGTCTGCTAGGAGATTTGAGCAGCTTTTATACAGACTTGACTGTACGA-AG 1853
||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||
Sbjct 1807 ATAGCCAAAGGTCTGCTAGGAGATTTGAGCAGCTTTTCGACAGACTTGACTGTAC-AGAG 1865
Query 1854 TGCAAAAGATATGCCTCTTGATAAAGTATTTGCAAAGAATGTGATTGACTTGCTTACTGC 1913
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1866 TGCAAAAGACATGCCTCTTGATAAAGTATTTGCAAAGAATGTTATTGACTTGCTTACTGC 1925
Query 1914 TGAGGCATGGCTCTCTGAAGATAAACAGCTAAAAGAGAAGATTGCCAAACTAAGCATCCA 1973
|||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1926 TGAGGCATGGTTTTCTGAAGATAAACAGCTAAAAGAGAAGATTGCTAAACTAAGCATCCA 1985
Query 1974 AACTGGCGTACCATCCGAGTATACTCGAATGATCCAATTAGAGAACACAGAAGAATTAAA 2033
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1986 AACCGGCGTACTATCCGAGTATACTCGAATGATCCAATTAGAGAACACAGAAGAATTGAA 2045
Query 2034 ACCCAGCGAAACTGGCGTAAAGAAAAAGACAACAAGCAATGGAGAGAAACAGAAGATGAT 2093
||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||
Sbjct 2046 ACCCAGCGAAACTGGCGGAAAGAAAAAGACAACAAGCAACGGCGAGAAACAGAAGATGAT 2105
Query 2094 ATCAAGAACGATCCCGCTACAAAGCCTTGGGATAGGCTTTGGTGATAAAACAGCGACCAG 2153
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||
Sbjct 2106 ATCAAGAACGATCCCGCTACAAAGCCTTGGGATAGGATTTGGGGATAAAACAGCCACCAG 2165
Query 2154 AGAGAATGTTCCACCAGGATTTGGTGAGCAGAAAGCACCTGATGCTGCTGAGAAATTCGT 2213
|||||||||||| ||||||||||| ||||||||||| ||||||||||||||||| |||||
Sbjct 2166 AGAGAATGTTCCGCCAGGATTTGGCGAGCAGAAAGCTCCTGATGCTGCTGAGAAGTTCGT 2225
Query 2214 CAAGGCTGCTTCGAGCTGTTGTGTCTCCTTGTGCAATAAATGTTGCTGCATGTGTTGTGT 2273
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2226 CAAGGCTGCTTCGAGCTGTTGTGTCTCCTTGTGCAACAAATGTTGCTGCATGTGTTGTGT 2285
Query 2274 CCAATGCTGCTCTAAGCTCAATGATCAATGTGTCCTTGTCTTCACACAGCTCTTCACAGC 2333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2286 CCAATGCTGCTCTAAGCTCAATGATCAATGTGTCCTTGTCTTCACACAGCTCTTCACAGC 2345
Query 2334 GATTGCTTGCATCGCCTGTTTTGAATGTTGCACAACTGTTTGCTGTGCTGGAGACGACGG 2393
|||||||||||||||||| |||||||||||| |||||||||||||| |||||||||| ||
Sbjct 2346 GATTGCTTGCATCGCCTGCTTTGAATGTTGCTCAACTGTTTGCTGTTCTGGAGACGATGG 2405
Query 2394 GTAGTTAGTTATATTATTTATaaaaaaaaa-CGGTTTTGAATTCGAGTGTAAAGCTTTAA 2452
||||||||||| | ||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 2406 GTAGTTAGTTA-A--ATT-ATAAAAAAAAATCGGTTTTGAATTCGAGTGTAAAGCTTTAA 2461
Query 2453 AAGTTTCAA-GTAAGTTTGTACATTT-ACATACACACTGCATGTAATTTCTGTACGGCCT 2510
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2462 AAGTTTCAAAGTAAGTTTGTACATTTTACATACACACTGCATGTAATTTCTGTACGGCCT 2521
Query 2511 GATCAAATATAAAAGCTGTGG 2531
|||||||||||||||||||||
Sbjct 2522 GATCAAATATAAAAGCTGTGG 2542
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 125668192215
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5