BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472133
Length=849
Score E
Sequences producing significant alignments: (Bits) Value
AT1G19115.3 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 918 0.0
> AT1G19115.3 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT1G72490.1);
Has 30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422;
Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source:
NCBI BLink). | chr1:6606237-6607346 FORWARD LENGTH=791
Length=791
Score = 918 bits (497), Expect = 0.0
Identities = 593/636 (93%), Gaps = 20/636 (3%)
Strand=Plus/Plus
Query 1 ATTGACAGAAAAAGAAAATTTCTTGGAGATCATTGACAGAAAAAGAAATTTTCTTGGATA 60
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 11 ATTGACAGAAAAAGAAAATTTCTTGGAGAACATTGACAGAAAAAGAAAATTTCTTGGATA 70
Query 61 AACACACATATACATGTGC--TT-T-TAT--ATGTCTCTGAAATATGAAGATTTTTAGTT 114
|||||||| |||||||||| || | ||| |||||||||||||||||||||||||||||
Sbjct 71 AACACACACATACATGTGCTTTTATATATGCATGTCTCTGAAATATGAAGATTTTTAGTT 130
Query 115 GGGTTCAAAGAAAGCTTAGCGGAAAGAAGCATGAGCCTACTTCAGATTCTTCTCAAGAAT 174
|||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 131 GGGTTCAAAGAAAGCTTAGCGGAAAGAAGCGTGTGCCTACTTCAGATTCTTCTCAAGAAC 190
Query 175 CATTAGGTCCTCCTTTGAGTAAAGAAGTCCAAGGTTTGCCTCAAGACGAAGAAACCTTCT 234
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 191 CATCAAGTCCTCCTTTGAGTAAAGAAGTCCAAGGTTTGCCTCAAGACGAAGAAACCTTCT 250
Query 235 TAGCCATTGGAACACTTGGAAACAATCTC-TGCCC---C---AAG--GAAGAAGAAGAAA 285
||||||| |||||||||||||||||| || | ||| | ||| |||||||||||||
Sbjct 251 TAGCCATCGGAACACTTGGAAACAATATCTTCCCCAAGCAAGAAGAAGAAGAAGAAGAAA 310
Query 286 CAGATTCTAGCAAATTAGATCTAACTGCGGTTAATACAGATGTTACTATTGGGAAGAAGA 345
||||||||||| || |||| ||||| |||||||||||||||||||||| ||||||||||
Sbjct 311 CAGATTCTAGC-AA--AGATATAACTCCGGTTAATACAGATGTTACTATCGGGAAGAAGA 367
Query 346 AATCACTTTCTTTTCTTCTCAAGAAGATGTTTGTTTGCACAAGTGGCTTCAAAACTCCAC 405
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 368 AATCGCTTTCTTTTCTTCTCAAGAAGATGTTTGTTTGCACAAGTGGCTTCAAAACTCCAC 427
Query 406 CTCCTCTTCTTGATTTGTCTAGAGGAGATTCATTGCACAATACACGAATGGAAAAGATGC 465
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 428 CTCCTCTTCTTGATTTATCTAGAGGAGATTCATTGCACAACACACGAATGGAAAAGATGC 487
Query 466 TTAGGACAATACTCAACAAGAAGATACATCCACAACGTTCAAATTCTATTGCAAAGAAGT 525
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 488 TAAGGACAATACTCAACAAGAAGATACATCCACAACGTTCAAATTCTATAGCAAAGAAGT 547
Query 526 ACTTGGAGAA-TCATCATAAGTTTGTAGATGAAGCTCGTTCAAGTGTTGACGCCAACAAA 584
||||||| || | |||||||| || | |||||||||||||||||||||||||||||||||
Sbjct 548 ACTTGGA-AAGTAATCATAAGATTATGGATGAAGCTCGTTCAAGTGTTGACGCCAACAAA 606
Query 585 TGGGTCAAGACTGATTCTGAATGTGAGATTTTCTAA 620
||||||||||||||||||||||||||||||||||||
Sbjct 607 TGGGTCAAGACTGATTCTGAATGTGAGATTTTCTAA 642
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41392937128
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5