BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472135
Length=716
Score E
Sequences producing significant alignments: (Bits) Value
AT1G19120.1 | Symbols: | Small nuclear ribonucleoprotein famil... 1081 0.0
> AT1G19120.1 | Symbols: | Small nuclear ribonucleoprotein family
protein | chr1:6608115-6609369 FORWARD LENGTH=767
Length=767
Score = 1081 bits (585), Expect = 0.0
Identities = 677/720 (94%), Gaps = 11/720 (2%)
Strand=Plus/Plus
Query 1 AAATTAGGGTTCTTTGATTCTCTGTTCTTGAGCTCAGTTATCGA-G-G-AGAAGAAAAGG 57
|||||||||||| |||||||||||||||| |||||||| ||||| | | |||||||||||
Sbjct 40 AAATTAGGGTTCGTTGATTCTCTGTTCTTAAGCTCAGTAATCGAGGAGAAGAAGAAAAGG 99
Query 58 AGAGAGATCGGGAATTGGGAAACTGACAAGTCAAAAAGGCAAATGCGAGTGGAGGAGATT 117
|| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 100 -GA-AGATCGGGAATTGGGAAACTGAGAAGTCAAAAAGGCAAATGCGAGTGGAGGAGATT 157
Query 118 GAGTTTTAGTTAGAGTTCCAATGTCTTGGGCTGCTCCTGATGATATCTTCTTCTCCACTT 177
||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 158 GAGTTTTAG--A-A-TTCCAATGTCTTGGGCTGCTCCTGATGATATCTTCTTCTCCACTT 213
Query 178 CTCTTGCTGCTTACTTAGACAAGAAACTTCTTGTGTTGCTTCGTGATGGTAGGAAACTGA 237
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 214 CTCTTGCTGCTTACCTAGACAAGAAACTTCTTGTGTTGCTTCGTGATGGTAGGAAACTGA 273
Query 238 TGGGTTTACTTCGATCCTTTGATCAATTTGCTAATGCTGTTATAGAAGAAGCTTATGAAA 297
||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 274 TGGGTCTACTTCGGTCCTTTGATCAATTTGCTAATGCTGTTTTAGAAGAAGCTTATGAAA 333
Query 298 GAGTCATCGTGGGTGATCTCTACTGTGATATTCCTTTAGGTCTATACATTATCCGTGGAG 357
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 334 GAGTCATTGTGGGTGATCTCTACTGTGATATTCCCTTAGGTCTATACATTATCCGTGGAG 393
Query 358 AAAATGTTGTCTTGATTGGTGAATTGGACGTTGAAAAAGAAGAGCTTCCTGCTCAAATGG 417
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||
Sbjct 394 AAAATGTTGTCTTGATTGGTGAATTGGACGTGGAAAAAGAAGAGCTTCCAGCTCATATGG 453
Query 418 TTCAGGTTTCAGAAGCAGAGATAAAAAGGGCTCAGAAAGCAGAGAAAGAAGAAATGCTTT 477
|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 454 TTCAGGTTCCAGAAGCAGAGATAAAAAGGGCTCAGAAAGCAGAGAAGGAAGAAATGCTTT 513
Query 478 TGAAGGGTACAATGCGAAAAAGAATGGAGTTCCTTGATCTCGATTAGGATATTTGCTTAT 537
| ||||| |||||||| ||||||||||||||||||||||||||||||| |||| | |||
Sbjct 514 TAAAGGGCACAATGCGGAAAAGAATGGAGTTCCTTGATCTCGATTAGGGCATTTTCCTAT 573
Query 538 GTGCTGCAGCATCGTAGAAACTAGAAGACCTGAAGATGGAGAATACAGAAGATCCTTAAA 597
||| |||||||| ||||||||||||||| || ||||||||| ||||||||||||||||||
Sbjct 574 GTGTTGCAGCATTGTAGAAACTAGAAGATCTCAAGATGGAGGATACAGAAGATCCTTAAA 633
Query 598 TGTCATAATGTT-GCTTGATGTGTGTATGTGTGGATGACATTGATGAATCCTTGGAACTT 656
||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 634 CGTCATAATGTTAG-TTGATGTGTGTATGTGTGGATGACATTGATGAATCCTCAGAACTT 692
Query 657 AGTGGTTGCAGATCCTCTGCTCTGTTTATGGAATGAAATTGTTGAGCATGTTCTTTACTG 716
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 693 AGTCGTTGCAGATCCTCTGCTCTGTTTATGGAATGAAATTGTTGAGCCTGTTCTTTACTG 752
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34711795577
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5