BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472138
Length=1281
Score E
Sequences producing significant alignments: (Bits) Value
AT1G19140.2 | Symbols: | FUNCTIONS IN: molecular_function unkn... 1949 0.0
> AT1G19140.2 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: ubiquinone biosynthetic process; LOCATED
IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: COQ9
(InterPro:IPR013718), Ubiquinone biosynthesis protein COQ9
(InterPro:IPR012762); Has 35333 Blast hits to 34131 proteins
in 2444 species: Archae - 798; Bacteria - 22429; Metazoa
- 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes
- 9610 (source: NCBI BLink). | chr1:6610773-6612516 REVERSE
LENGTH=1294
Length=1294
Score = 1949 bits (1055), Expect = 0.0
Identities = 1223/1300 (94%), Gaps = 27/1300 (2%)
Strand=Plus/Plus
Query 1 GTTACCGGGGTCGGTTACGAAGAAAGGAAGCTCTTTTACTTTCTCGTGGCAACGATCTCA 60
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1 GTTAGCGGGGTCGGTTACGAAGAAAGGAAGCTCTTTTACATTCTCGTGGCAACGATCTCA 60
Query 61 TCTACGTGTCAC-AAAACTCAAATCTCTTACTCCGACGAACGATGTACCGAACGGCGGCG 119
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 61 TCTACGTGTCACGAAAACTCAAATCTCTTACTCCGGCGAACGATGTACCGAACGGCGGCG 120
Query 120 AAGCGTTTTCTCGCCGGTGGTGGATTCACAACCACCCGCCTCCTCCGATTTCCGAAGCTC 179
|||||| ||||||||||||||||| |||| |||||||| ||||||||||| |||||||||
Sbjct 121 AAGCGTCTTCTCGCCGGTGGTGGAATCACTACCACCCGTCTCCTCCGATTACCGAAGCTC 180
Query 180 AGGTCCACAATCATCCCTTCCTCTTACACTTCCGGTCTCTGCACTTCGTCGATGGGTGGT 239
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 181 AGGTCTACAATCATCCCTTCCTCTTACACTTCCGGTCTCTGCACTTCGTCGAT---TGGT 237
Query 240 GGTAATACTGAATCGCCAATGGGTAATCAATCTGTGAACCCTAATCAATCGGGTCCAA-- 297
|||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||
Sbjct 238 GGTAATACTGAATCACCAATGGGTAAGCAGTCTGTGAACCCTAATCAATCGGGTCCAACG 297
Query 298 -CG--G-------CGGGTACAGGGGAAGGACAACGTCGACATGAGAGCAGGAAGCCGAGA 347
|| | |||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 298 GCGTCGTCTTCTACGGGTACAGGGGAAGGACAACGCCGACATGAGAGCAGAAAGCCGAGA 357
Query 348 GCTGAGTTCCAAGAAGAGCAGGCTCGTGTTCTCTCTGCGTCTCTTCGTCACGTGCCGAGA 407
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 358 GCTGAGTTCCAAGAAGAGCAGGCTCGTGTTCTCTCTGCGTCTCTCCGTCACGTGCCGAGG 417
Query 408 TTAGGTTGGACGGAAGAAGCGATGATGGCTGGTTCAAGGGATGTTGGTGTGTCTCCTTCG 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 TTAGGTTGGACGGAAGAAGCGATGATGGCTGGTTCAAGGGATGTTGGTGTGTCTCCTTCG 477
Query 468 ATTGTTGGCTCTTTCTCCAGGAAAGAAGCTGCTCTTGTTGAGTTCTTCATGGATGAATGC 527
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 ATTGTTGGGTCTTTCTCCAGGAAAGAAGCTGCTCTTGTTGAGTTCTTCATGGATGAATGC 537
Query 528 CTTCAATTGCTTATGGACAGAATTGACTCTGGATTGGATTTGCAAAACCTGATCCCAAGT 587
||||||||||||||||| ||||| ||||||||||||||||||||||| ||||| ||||||
Sbjct 538 CTTCAATTGCTTATGGATAGAATAGACTCTGGATTGGATTTGCAAAATCTGATTCCAAGT 597
Query 588 GAACGTAT-TGCCAAGCTCATTAGAATTCGCCTAGAAATGCAAGTCCCTTACATGTCAAA 646
|||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 598 GAACGTATCT-CCAAGCTCATTAGAATTCGTCTAGAAATGCAAGTCCCTTACATGTCAAA 656
Query 647 ATGGCCCCAGGCTCTTAGCATCCAAGCGCATCCTCTGAATGTCCCAACGAGTTTTAAGCA 706
||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 657 ATGGCCCCAAGCTCTTAGCATTCAGGCGCATCCTCTGAATGTCCCAACGAGTTTTAAGCA 716
Query 707 ACGGGCAATGTTAGTTGATGAGATATGGCATGCTGTTGGAGATGGAGCCTCGGATTTAGA 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 ACGGGCAATGTTAGTTGATGAGATATGGCATGCTGTTGGAGATGGAGCCTCGGATTTAGA 776
Query 767 TTGGTATGTCAAGCGCACTATTCTTGGAGGCGTTTACTCAACCACAGAGATCTACATGCT 826
||||||||||||||| |||||||||||||||||||||||||| || ||||| ||||||||
Sbjct 777 TTGGTATGTCAAGCGTACTATTCTTGGAGGCGTTTACTCAACTACCGAGATTTACATGCT 836
Query 827 CACCGATGACTCCTTAGCAGAACATCGCGATACATGGGCATTCTTGGATGACAGAGTCAA 886
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 CACCGATGACTCCTTAGCAGAACATCGCGATACATGGGCATTCTTGGATGACAGAGTCAA 896
Query 887 AGATGCTTTTGATCTGAAGAAGAGCATACAAGAGGCCAAGTATTTCGCAGAAGACATAGG 946
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 897 AGATGCTTTTGATCTTAAGAAGAGCATACAAGAGGCCAAGTATTTTGCAGAAGACATAGG 956
Query 947 AGCTGGAGTTGGGAAATCGGTTCAAGGACTGATGAATGGAGTTATGCAGACGATGTCCAG 1006
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 957 AGCTGGAGTTGGGAAGTCGGTTCAAGGACTGATGAATGGAGTTATGCAGACAATGTCCAG 1016
Query 1007 GAGGAGTGGTGGCTCTGCGTTTTGAGAAGATCACAC-TTTAACACATGATTCTGCTTCAC 1065
|| ||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||
Sbjct 1017 AAGAAGTGGTGGCTCTGCGTTTTGAAAAGATCACACCTTTA-CACATGATTCTGCTTCAC 1075
Query 1066 --TCCTTAAAGATTCTCCAATATTTTGAGTTGGCATATGCTCTAATAATAATGAGATTAG 1123
|||||| ||||||||||||||||||||||| || | || | |||||||||||||||
Sbjct 1076 ACTCCTTACGGATTCTCCAATATTTTGAGTTGGGATTTACT--A-TAATAATGAGATTAG 1132
Query 1124 ACT-ATATGACTTGAAGTGAAGGCATATGAACTA-TATATTATCTTCTACGTTTGAATAA 1181
||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1133 ACTTATATGAGTTGAAGTGAAGGCATATGAACTAATATATTATCTTCTACGTTTGAATAA 1192
Query 1182 ACCATTGAGTTTGAAATCTTTAATTTGTAAATGTGGATGAAAACTGTGCTGTGTTTGGTT 1241
|||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||
Sbjct 1193 ACCATTGAGTTTGAAATCTTTAATTTGTAAATAAGGATGAAACCTGTTCTGTGTTTGGTT 1252
Query 1242 ATTCTGTGAGTAAACAGAGTTGGAAACTTTTAATCTTGGT 1281
||||||| |||||||||||||||||||| |||| |||||
Sbjct 1253 GTTCTGTGCGTAAACAGAGTTGGAAACTTGTAATTTTGGT 1292
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63001683975
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5