BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472139
Length=1042
Score E
Sequences producing significant alignments: (Bits) Value
AT1G19150.1 | Symbols: LHCA6, LHCA2*1 | photosystem I light har... 1491 0.0
> AT1G19150.1 | Symbols: LHCA6, LHCA2*1 | photosystem I light harvesting
complex gene 6 | chr1:6612749-6613972 FORWARD LENGTH=1043
Length=1043
Score = 1491 bits (807), Expect = 0.0
Identities = 977/1055 (93%), Gaps = 28/1055 (3%)
Strand=Plus/Plus
Query 1 ACAATCAAAGATGACACTAGCTAGACATTTTCATTTTCATCT-CCCACGAATCAAAGATG 59
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 1 ACAATCAAAGATGACACTAGCTAGACATTTTCGTTTTCATCTCCCCACGAATCAAAGATG 60
Query 60 GCTTTTGCCATTGCTTCTGCTCTCACTTCCACACTCACATTATCTACGAGCAGAGTCCAA 119
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 GCTTTTGCCATTGCTTCTGCTCTCACTTCCACACTCACATTATCCACGAGCAGAGTCCAA 120
Query 120 AA-CGCGACCCAGAGAAGACCACAAGTAGCGTCCGCATCACCCACTGGTGGAAGA--A-T 175
|| | | ||||||||||||||||| ||||||||| ||||| |||| ||||||||| | |
Sbjct 121 AATC-CTACCCAGAGAAGACCACATGTAGCGTCCACATCATCCACCGGTGGAAGATTAAT 179
Query 176 GAGTGAGCGCTTGGTGGTGGTTCGTGCCGGCAAAGAAGTTTCTAGCATCTGTGAACCACT 235
||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 180 GAGAGAGCGCTTGGTGGTGGTTCGTGCCGGCAAAGAAGTTTCTAGCGTCTGTGAACCACT 239
Query 236 TCCTCCGGACCGTCCTTTGTGGTTCCCTGGTAGCTCTCCACCTGAATGGCTCGATGGCAG 295
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TCCTCCGGACCGTCCTTTATGGTTCCCTGGTAGCTCTCCACCTGAATGGCTCGATGGCAG 299
Query 296 CTTACCTGGTGATTTTGGTTTCGATCCTCTCGGTTTAGGGTCTGACCCGGACACCCTCAA 355
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 300 CTTACCTGGTGATTTCGGTTTCGATCCTCTCGGTTTAGGGTCTGATCCGGACACCCTCAA 359
Query 356 ATGGTTTGCACAAGCTGAGCTCATACATAGCCGGTGGGCAATGCTGGCCGTGACAGGTAT 415
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 360 ATGGTTTGCACAAGCTGAGCTTATACATAGCCGGTGGGCAATGCTGGCCGTGACCGGTAT 419
Query 416 CCTAATACCGGAATGTCTAGAGCGGTTAGGTTTCATCGAGAATTTCTCATGGTACGACGC 475
| ||||||| |||||||| ||||||||||||||||| || |||||||||||||| |||||
Sbjct 420 CATAATACCAGAATGTCTCGAGCGGTTAGGTTTCATTGAAAATTTCTCATGGTATGACGC 479
Query 476 AGGGTCTCGTGAGTACTTCGCGGATTCCACTACGTTGTTTGTGGCTCAAATGGTTTTAAT 535
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 480 AGGGTCTCGTGAGTACTTCGCGGATTCCACTACGCTGTTTGTGGCTCAAATGGTTTTAAT 539
Query 536 GGGCTGGGCAGAGGGTAGAAGATGGGCTGATTTGATTAAACCGGGGTCTGTGGACATAGA 595
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 540 GGGCTGGGCAGAAGGTAGAAGATGGGCTGATTTGATTAAACCGGGGTCTGTTGACATAGA 599
Query 596 ACCAAAGTACCCGCACAAAGTAAATCCTAAACCGGATGTTGGTTACCCGGGCGGTTTATG 655
||||||||||||||| |||||||||||||||||||||||||||||||| || ||||| ||
Sbjct 600 ACCAAAGTACCCGCATAAAGTAAATCCTAAACCGGATGTTGGTTACCCTGGAGGTTTGTG 659
Query 656 GTTCGATTTTATGATGTGGGGTAGAGGTTCTCCTGAACCGGTAATGGTTTTGAGGACTAA 715
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 660 GTTCGATTTTATGATGTGGGGGAGAGGTTCTCCTGAACCGGTAATGGTTTTGAGGACTAA 719
Query 716 AGAGATTAAAAACGGACGGCTCGCGATGCTTGCTTTCGTTGGGTTTTGTTTCCAAGCTAA 775
||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 720 AGAGATTAAGAACGGACGGCTCGCGATGCTTGCTTTCCTTGGGTTCTGTTTCCAAGCTAC 779
Query 776 CTACACTAGTCAAGATCCAATTGAAAATCTCATGGCTCATCTTGCTGATCCTGGTCATTG 835
||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 780 CTACACTAGCCAAGATCCAATTGAGAATCTCATGGCTCATCTGGCTGATCCTGGTCATTG 839
Query 836 CAACGTCTTCTCGGCATTTACATCACATTAATGAGGATTAGCCTGCGGCAAA-ATTAAt- 893
||||||||| |||||||||||||||||||||||||||||||| || ||| || || |||
Sbjct 840 CAACGTCTTTTCGGCATTTACATCACATTAATGAGGATTAGCTTGGGGCGAATAT-AATA 898
Query 894 ttttttATAAATATAATAGATCATGGATGTTGAACTTTTGTATATAGCGTCACTCGCCGT 953
||||||||| ||| | | |||||||||||||||||||||| | ||||||||||||
Sbjct 899 TTTTTTATA--TAT--T---T-ATGGATGTTGAACTTTTGTATA--GTGTCACTCGCCGT 948
Query 954 TGTTACAA-TTCATGCTTACTTAATTAATTACGTAACATGTAAAATA-AGTATATG-A-A 1009
|||||||| ||| ||||||||||||||| | |||| || || || | |||||| | |
Sbjct 949 TGTTACAACTTC-TGCTTACTTAATTAAC-ATGTAAAATATATTTTATA-TATATGTAGA 1005
Query 1010 C-AA-GAAACAAGACGAGAAAATGAGCTTTATTAT 1042
|| ||||||||| |||||||||||| |||||||
Sbjct 1006 AGAAAGAAACAAGAAGAGAAAATGAGCATTATTAT 1040
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51088127499
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5