BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472140
Length=1751
Score E
Sequences producing significant alignments: (Bits) Value
AT1G19170.1 | Symbols: | Pectin lyase-like superfamily protein... 2760 0.0
> AT1G19170.1 | Symbols: | Pectin lyase-like superfamily protein
| chr1:6616643-6618986 FORWARD LENGTH=1766
Length=1766
Score = 2760 bits (1494), Expect = 0.0
Identities = 1668/1752 (95%), Gaps = 12/1752 (1%)
Strand=Plus/Plus
Query 1 TCACCAGCTTCTGACACAGACTTCT-CAACTCTCATGGCGGATCTTTGCTTCTAATTCAC 59
||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||
Sbjct 10 TCACCAGCTTCTGACACAGACTT-TGCAACTCTCATGACGGATCTTTGCTTCTAATTCAC 68
Query 60 TATTTCTCAGCTAGATCTGAGGCACCAATATCAGAACCTCAATGTTTCTAATTCCTCGTA 119
|||||||| |||||||||| |||| || | ||||||||||||||||||| ||||||||
Sbjct 69 TATTTCTCGGCTAGATCTGTGGCA--AA-ACCAGAACCTCAATGTTTCTAGTTCCTCGTT 125
Query 120 AATCGAATCATGGTTGAGAATTTGCTTCCTTCTCGATTTCAATTTCATCTTCAGAGACTT 179
|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 126 AATCGAATCATGGTGGAGAATTTGTTTCCTTCTCGATTTCAATTTCATCTTCAGAGACTT 185
Query 180 GACCCGAAGCGTCGTCTTACTTCTTTCCTTGCTTCCCACAAGACACTCTTCACATTTCTC 239
|||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||
Sbjct 186 GACCCGAAGCGTCGTCTTACTTCTCTCCTTGCTTCTCACAAAACACTCTTCACATTTCTC 245
Query 240 TGGATCACTGCCTTTGGTTCCGTCTTCCTATGGCAGCGAACGGCTTACATCGAGGGCGGC 299
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 246 TGGATCACTGCCTTTGGTTCCGTCTTTCTATGGCAGCGAACGGCTTACATCGAAGGCGGC 305
Query 300 TCTGGAGCTGGCCCCGTCGGAGGAAAGTTCACGATTTTCGGTAAGATCAAACCGATTCAG 359
|||||| |||| || ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 306 TCTGGAACTGGTCCTGTCGGAGGAAAGTTCACAATTTTCGGTAAGATCAAACCGATTCAG 365
Query 360 CCACTTCCCCGATTGAGACCAGTTGTGTTTGATTTGAAGGATTTTGGAGGTGTCGGAGAT 419
||| |||||||||||||||| || ||||||||||||||||||||||||||||| ||||||
Sbjct 366 CCAATTCCCCGATTGAGACCTGTGGTGTTTGATTTGAAGGATTTTGGAGGTGTTGGAGAT 425
Query 420 GGCTTTACGCTTAACACCGAAGCGTTCGAGAGAGCTGTGATTTCAATCTCGAAGCTTGAG 479
|| |||||||||||||| ||||| |||||||||||||||||||||||||| ||||||| |
Sbjct 426 GGGTTTACGCTTAACACTGAAGCATTCGAGAGAGCTGTGATTTCAATCTCTAAGCTTGGG 485
Query 480 AGAAATAGCGGCGGAGGACAGCTGAATGTGCCGCCTGGACGGTGGCTCACGGCGCCGTTT 539
||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 486 GGAAGTAGCGGCGGAGGTCAGCTGAATGTGCCGCCTGGACGGTGGCTTACGGCGCCGTTT 545
Query 540 AATCTCACTAGCCATATGACTCTGTTTCTTGCTGAGGATTCCGAGATTCTTGGCGTTGAG 599
||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||
Sbjct 546 AATCTCACTAGCCATATGACTCTGTTTCTCGCAGAGGATTCCGAGATTCTTGGTGTTGAG 605
Query 600 GATGAGAAGTATTGGCCTTTAATGCCACCATTGCCTTCATATGGTTACGGTAGAGAGCAT 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 606 GATGAGAAGTATTGGCCTTTAATGCCACCATTGCCTTCATATGGTTACGGTAGAGAGCGT 665
Query 660 CCGGGACCTCGTTATGGGAGCTTAATCCATGGTCAAAACCTCAAAGACATTGTGATAACG 719
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 666 CCGGGACCTCGTTATGGGAGCTTAATCCATGGTCAAAACCTCAAAGATATTGTGATAACT 725
Query 720 GGTCATAATGGAACAATAAACGGGCAAGGACAATCGTGGTGGAAGAAGTATCAAAGAAGA 779
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 726 GGTCATAATGGAACAATAAACGGGCAAGGACAATCGTGGTGGAAGAAGCATCAAAGAAGA 785
Query 780 CTTCTCAACTATACGAGGGGGCCTTTAGTTCAAATAATGTGGTCGAGTGACATAGTTATC 839
||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||
Sbjct 786 CTTCTCAACTATACGAGAGGGCCTTTAGTTCAAATTATGTGGTCTAGTGACATAGTTATC 845
Query 840 GCTAACATAACAATGCGTGACTCACCGTTCTGGACTCTGCATCCATATGACTGCAAAAAC 899
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 846 GCTAACATTACAATGCGTGACTCACCGTTCTGGACTCTGCATCCATATGACTGCAAAAAT 905
Query 900 GTAACAATAAGGAATGTCACCATCTTGGCTCCTGTAACCGGAGCACCAAACACTGATGGA 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 906 GTAACAATAAGGAATGTCACCATCTTGGCTCCTGTAACCGGAGCACCAAACACTGATGGA 965
Query 960 ATTGATCCGGATTCGTGTGAGGATATGGTAATTGAGGACTGCTACATTAGCACAGGGGAT 1019
|||||||| |||||||| ||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 966 ATTGATCCAGATTCGTGCGAGGATATGGTAATTGAGGACTGTTACATTAGCACCGGGGAT 1025
Query 1020 GATGCGATCGCGATAAAAAGTGGATGGGATCAGTTTGGCATTGCATATGGACGACCTTCA 1079
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1026 GATGCGATCGCGATAAAGAGTGGATGGGATCAGTTTGGGATTGCATATGGACGACCTTCA 1085
Query 1080 ACAAACATTCTTATCCGTAATCTCGTTGTTCGCTCTGTTATCAGTGCTGGTGTATCAATC 1139
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1086 ACAAACATTCTTATTCGTAATCTCGTTGTTCGCTCTGTTATCAGTGCTGGTGTATCAATC 1145
Query 1140 GGAAGTGAAATGTCCGGTGGAATATCTAACGTGATGATCGAGAACCTTCTGATCTGGAAC 1199
||||| |||||||| |||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 1146 GGAAGCGAAATGTCTGGTGGAATATCTAATGTGACGATCGAGAACCTTCTGATCTGGAAC 1205
Query 1200 TCACGCCGTGGAATCAGAATTAAAACGGCACCAGGACGAGGCGGTTACATCAGAAACATA 1259
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1206 TCACGCCGTGGAATCAGAATTAAAACGGCTCCAGGACGAGGCGGTTACATCAGAAACATA 1265
Query 1260 ACCTACAAAAACCTAACACTAGACAATGTTCGGGTTGGGATCGTGATCAAAACGGATTAC 1319
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1266 ACCTACAAAAACCTAACACTAGACAATGTTCGGGTTGGGATAGTGATCAAAACGGATTAC 1325
Query 1320 AACGAGCATGCAGACGATAATTATGATCGGAAAGCATATCCGATACTCTCAGGATTCAGT 1379
|||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||
Sbjct 1326 AACGAGCATGCAGACGATAATTATGATCGGAAAGCATACCCGATACTTTCGGGATTCAGT 1385
Query 1380 TTTGCAGGAATCCACGGACAAGGAGTGCGAGTGCCGGTCCGAATCCATGGTAGCGAACAG 1439
|| || ||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1386 TTCGCGGGAATCCACGGACAAGGAGTGCGAGTGCCGGTCCGGATCCATGGAAGCGAACAG 1445
Query 1440 ATTCCGGTGAGGAATGTGACGTTTCGGGATATGTCGGTTGGGTTAACGTACAAGAAGAAA 1499
|||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1446 ATTCCGGTAAGGAATGTGACGTTTCGGGACATGTCCGTTGGGTTAACGTACAAGAAGAAA 1505
Query 1500 CATATATTCCAATGTTCGTTCGTGAAAGGACGAGTCTTCGGTTCGATATTTCCACGACCT 1559
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1506 CATATATTCCAATGTTCGTTCGTGAAAGGACGAGTGTTCGGTTCGATATTTCCTCGACCT 1565
Query 1560 TGCGAGAATTTTGATGTTTACGACGAGGAAGGTCGTCTTGTTAAGCCTGCAGCTGAGTCC 1619
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1566 TGCGAGAATTTTGATGTTTACGACGAGGAAGGTCGTCTGGTTAAGCCTGCAGCTGAGTCC 1625
Query 1620 AATGTGACGGACATTGACTACGACATTTGAATGTTTTTTCAATTCATTGTCATTTGTGTA 1679
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1626 AATGTGGCGGACATTGACTACGACATTTGAATGTTTTTTCAGTTCATTGTCATTTGTGTA 1685
Query 1680 CATAAAAGTAAATTTTGGGACACAAAAATGAAATTTTATTTGtttttttCTTTGGACTAT 1739
||||||||||||||||||||||||||||||||| || |||| || |||||||| ||
Sbjct 1686 CATAAAAGTAAATTTTGGGACACAAAAATGAAAATT-ATTT-TT-----CTTTGGACCAT 1738
Query 1740 TTCTCTTCGTCG 1751
||||||||||||
Sbjct 1739 TTCTCTTCGTCG 1750
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86595940125
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5