BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472144
Length=698
Score E
Sequences producing significant alignments: (Bits) Value
AT1G19210.1 | Symbols: | Integrase-type DNA-binding superfamil... 979 0.0
AT1G74930.1 | Symbols: ORA47 | Integrase-type DNA-binding super... 235 4e-61
AT5G21960.1 | Symbols: | Integrase-type DNA-binding superfamil... 130 2e-29
> AT1G19210.1 | Symbols: | Integrase-type DNA-binding superfamily
protein | chr1:6626822-6627530 REVERSE LENGTH=709
Length=709
Score = 979 bits (530), Expect = 0.0
Identities = 646/699 (92%), Gaps = 20/699 (3%)
Strand=Plus/Plus
Query 8 AGGGATCGTCTTCTTCGATGCAGTCAAAGTACAAAGGAGTGAGGAAGAGGAAATGGGGGA 67
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 6 AGGG-TCGTCTTCTTCGATGCAGTCAAAGTACAAAGGAGTGAGGAAGAGGAAATGGGGAA 64
Query 68 AATGGGTTTCAGAGATCAGACTACCAAACAGCAGAGAACGTATTTGGTTGGGCTCTTACG 127
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 65 AATGGGTTTCAGAGATCAGACTTCCCAACAGCAGAGAACGTATTTGGTTGGGCTCTTACG 124
Query 128 ATACTCCTGAGAAGGCGGCGCGTGCTTTCGACGCGGCTCTTTATTGCCTCCGTGGCAACA 187
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 125 ATACTCCTGAGAAGGCGGCGCGTGCTTTCGACGCGGCTCTTTATTGTCTCCGTGGCAACA 184
Query 188 ACGCCAAGTTCAATTTCCCTGATAACCCTCCGGTGATCAACGACGGACGAAACTTGTCGC 247
|||| |||||||||||||||||||| |||||||||||| || |||||| ||||||||||
Sbjct 185 ACGCAAAGTTCAATTTCCCTGATAATCCTCCGGTGATCTCCGGCGGACGTAACTTGTCGC 244
Query 248 GATCTGAGATCCGAGAAGCTGCTGCTAGGTTCGCTAATTCGTCGGAGGATGATTCAAGTG 307
|||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 245 GATCTGAGATAAGAGAAGCTGCTGCGAGGTTCGCTAATTCGGCGGAGGATGATTCAAGTG 304
Query 308 GCGGAGGAGCAGGATACGAGATACGGCAAGAGTC-GACTTCAACATCGATGGACATTGAT 366
|||||| |||||||||||||||||||||| || | ||||||||||||||||| |||||
Sbjct 305 GCGGAG---CAGGATACGAGATACGGCAAGAATCTG-CTTCAACATCGATGGACGTTGAT 360
Query 367 TCGGAGTTCTTGACTATGCTTCCGACTGTTGGTTCGGGTAATTTCGCTTCGGAGTTTGGG 426
|||||||| |||| |||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 361 TCGGAGTTTTTGAGTATGCTTCCGACGGTTGGTTCGGGTAACTTCGCTTCGGAGTTTGGG 420
Query 427 TTGTTCCCTGGGTTTGATGATTTCTCCGATGAATACTCCGGCGATCGTTTCAGAGAGCAG 486
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 421 TTATTCCCTGGGTTTGATGATTTCTCCGATGAATACTCCGGTGATCGTTTCAGAGAGCAG 480
Query 487 CTTTCACCTACACAAGATTATTATCAA---GGAGAAGAGGA-TTACGACGGTGGTTCCAT 542
||||| |||||||||||||||||||| ||||||||| | ||||| || |||||||||
Sbjct 481 CTTTCGCCTACACAAGATTATTATCAGCTTGGAGAAGAG-ACTTACGCCGATGGTTCCAT 539
Query 543 GTTTCtttggaatttttgaatttcatgtgattcacaatctgaaaattttgatttgggttt 602
|||||||||||||||||||||| ||| | |||||||||||||||||||||| ||||||||
Sbjct 540 GTTTCTTTGGAATTTTTGAATTCCAT-T-ATTCACAATCTGAAAATTTTGACTTGGGTTT 597
Query 603 tttaatttttttttgtta-ttctttttacccaatttttttG-GATCATTGGGATAAGG-G 659
|||| ||||||||||| | |||||| ||||||||||||| |||||||||||||| | |
Sbjct 598 TTTA-TTTTTTTTTGT-AGTTCTTT--ACCCAATTTTTTTTTGATCATTGGGATAAAGAG 653
Query 660 ATATTCATTCATTAtttttttCCCACGTGTTAGAATTTT 698
|||||||||| |||||||||||||||||||||| ||||
Sbjct 654 TTATTCATTCACTATTTTTTTCCCACGTGTTAGATTTTT 692
> AT1G74930.1 | Symbols: ORA47 | Integrase-type DNA-binding superfamily
protein | chr1:28144132-28145049 FORWARD LENGTH=918
Length=918
Score = 235 bits (127), Expect = 4e-61
Identities = 225/270 (83%), Gaps = 16/270 (6%)
Strand=Plus/Plus
Query 23 CGATGCAGTCAAAGTACAAAGGAGTGAGGAAGAGGAAATGGGGGAAATGGGTTTCAGAGA 82
||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||
Sbjct 154 CGATGCAGTCAAAGTACAAAGGAGTGAGGAAGAGGAAATGGGGAAAATGGGTATCGGAGA 213
Query 83 TCAGACTACCAAACAGCAGAGAACGTATTTGGTTGGGCTCTTACGATACTCCTGAGAAGG 142
||||||| ||| ||||||||||||| |||||||| ||||||||||| ||||| |||||||
Sbjct 214 TCAGACTTCCACACAGCAGAGAACGAATTTGGTTAGGCTCTTACGACACTCCCGAGAAGG 273
Query 143 CGGCGCGTGCTTTCGACGCGGCTCT-TTATTGCCTCCGTGGCAACAACGCCAAGTTCAAT 201
||||||||||||||||||| |||| || ||| ||||| ||| | | || || ||||||
Sbjct 274 CGGCGCGTGCTTTCGACGCCGCTCAATT-TTGTCTCCGCGGCGGCGATGCTAATTTCAAT 332
Query 202 TTCCCTGATAACCCTCCGGT-GATCAACGACGGACGAAA---C-TTGTCGCGATCTG-AG 255
|||||| |||| || ||| | |||| | || | |||| | ||| ||| || | ||
Sbjct 333 TTCCCTAATAATCCACCG-TCGATCT-C--CGTA-GAAAAGTCGTTGACGCC-TCCGGAG 386
Query 256 ATCCGAG-AAGCTGCTGCTAGGTTCGCTAA 284
|| | || ||||||||||||| ||||||||
Sbjct 387 ATTC-AGGAAGCTGCTGCTAGATTCGCTAA 415
> AT5G21960.1 | Symbols: | Integrase-type DNA-binding superfamily
protein | chr5:7258363-7259308 REVERSE LENGTH=946
Length=946
Score = 130 bits (70), Expect = 2e-29
Identities = 158/199 (79%), Gaps = 12/199 (6%)
Strand=Plus/Plus
Query 32 CAAAGTACAAAGGAGTGA-GGAAGAGGAAATGGGGGAAATGGGTTTCAGAGA-TCAGACT 89
||||||||| ||| || | |||||||||| ||||| |||||||| | |||| || | ||
Sbjct 112 CAAAGTACACAGGTGT-ACGGAAGAGGAAGTGGGGAAAATGGGTGGCTGAGATTC-GTCT 169
Query 90 ACCAAACAGCAGAGAAC-GTATTTGGTTGGGCTCTTACGA-TACTCCTGAGAAGGCGGCG 147
|| |||||| | | || | || ||||| ||||||| ||| | || ||||||||||||||
Sbjct 170 CCCCAACAGCCGTG-ACAGGATCTGGTTAGGCTCTTTCGACT-CTGCTGAGAAGGCGGCG 227
Query 148 CGTGCTTTCGACGCGGCTCTTTATTGCCTCCGTGGCAACA-ACGCCAAG-TTCAATTTCC 205
||||||||||||||||||||||| || || |||||| | | || | | ||||| ||||
Sbjct 228 CGTGCTTTCGACGCGGCTCTTTACTGTCTTCGTGGCCCCGGA-GC-ACGCTTCAACTTCC 285
Query 206 CTGATAACCCTCCGGTGAT 224
| || || ||||||| |||
Sbjct 286 CCGACAATCCTCCGGAGAT 304
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33807580931
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5