BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472147
Length=670
Score E
Sequences producing significant alignments: (Bits) Value
AT1G19240.1 | Symbols: | unknown protein; Has 24 Blast hits to... 856 0.0
> AT1G19240.1 | Symbols: | unknown protein; Has 24 Blast hits
to 24 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr1:6649243-6650420 REVERSE
LENGTH=670
Length=670
Score = 856 bits (463), Expect = 0.0
Identities = 616/684 (90%), Gaps = 33/684 (5%)
Strand=Plus/Plus
Query 1 ATTGAACCCTAAACCCTAATTGATCGTTGTGC-GATAATGGAGGGTTTGGAGAAGTTTTA 59
|||||||||||||||||||||||||| | | || ||||||||||||||||||||||||
Sbjct 4 ATTGAACCCTAAACCCTAATTGATCG--G-CCAGA-AATGGAGGGTTTGGAGAAGTTTTA 59
Query 60 CAGCAAGATGGTGAAAGATGCGAAATCGGCAGTTTCTTCTTCGTCATCTTCTCTATCTGA 119
|||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||
Sbjct 60 CAGCAAGATGGTGAAAGAAGCGAAATCGGCAGCTTCTTCTTCGTCGTCTTCTCTATCTGA 119
Query 120 TTTTGCGGATAATCTGATGCAGGACAAACGAGGCGCCGGCAGCAATTTG---ACTACATA 176
||||||||||||||||||||| |||||||||| ||||| | |||| ||| ||||||||
Sbjct 120 TTTTGCGGATAATCTGATGCAAGACAAACGAGCCGCCGCCGGCAACTTGACTACTACATA 179
Query 177 CGACGCAGGATCCGGCGTTCTAGTCAA-CAGACCTCCGAGCGGAGTTTCGGTCTGGACGT 235
|||||||||||||||| ||| || || ||||||||| ||||||||||||||||||||||
Sbjct 180 CGACGCAGGATCCGGCACTCTGGT-AACCAGACCTCCCAGCGGAGTTTCGGTCTGGACGT 238
Query 236 GTTCAAAGTTGTGCGCTGTTTTCTTTGTCGCTGGAGTGTTTGTTGGTTATACCCTTAAGA 295
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 239 GTTCAAAGTTGTGCGCTGTTTTCTTTGTCGCTGGAGTGTTTGTGGGTTATACACTTAAGA 298
Query 296 GACGGGTTCGACGCTGGGCTTCTAAATTGCTGAGAAGAATAAAGGATGATTAACTCCAAC 355
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 299 GACGGGTTCGACGCTGGGCTTCTAAATTACTGAGAAGAATAAAGGATGATTAACTCCAAC 358
Query 356 CTCTGTTTTGTCTTCTACTGCGAGTTTTGGTACTGTTATCACATAGGCATTACTCTATGT 415
||| || |||||||||| ||||||||||| ||| |||| |||||||||||||| |
Sbjct 359 CTC-GT-----CTTCTACTGCAAGTTTTGGTACACTTAGCACAAAGGCATTACTCTAT-T 411
Query 416 TCCT-TC-TTGAATGTGTTTCAGTACCAATATACTGTGCTTGAGGCACCTTGTCGATGAA 473
| | || |||||||||||| ||||||||||||||||||| |||||||||| || |||||
Sbjct 412 -CTTATCCTTGAATGTGTTTTAGTACCAATATACTGTGCT-GAGGCACCTTATCAATGAA 469
Query 474 ACTTTTTTGTTTACTTTTCTGCCTCTGTGACTAGTAGTAGCTTGTGGTAATGGAAAGAGA 533
| ||| |||||| ||| ||||||| |||||||||||| ||||||||||||||||||||
Sbjct 470 AATTTGTTGTTTGCTTCTCTGCCTTTGTGACTAGTAG---CTTGTGGTAATGGAAAGAGA 526
Query 534 GATTGGATCATCTTGGGAAAGACGCGTATATTATTTCGTATAGAGTAACTTATATTTGTT 593
||||| ||||||||||||||||| ||||||||||||||||||| ||||||| |||||||
Sbjct 527 GATTGAATCATCTTGGGAAAGACACGTATATTATTTCGTATAG--TAACTTAGATTTGTT 584
Query 594 ATTTTCATGCCTTTAGGCGGG-TCTATACAAACAGGCAAGACAATGTTTG-TG----A-C 646
||||||||||||||||||||| ||||||||||||||||||||||||||| | | |
Sbjct 585 ATTTTCATGCCTTTAGGCGGGGTCTATACAAACAGGCAAGACAATGTTTCCTTTTTTAAC 644
Query 647 ATAGTGTATATAATCTACTTTGCT 670
||||||||||||||||||||||||
Sbjct 645 ATAGTGTATATAATCTACTTTGCT 668
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32401024815
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5