BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472149
Length=2321
Score E
Sequences producing significant alignments: (Bits) Value
AT1G19270.1 | Symbols: DA1 | DA1 | chr1:6662501-6666028 FORWARD... 3417 0.0
> AT1G19270.1 | Symbols: DA1 | DA1 | chr1:6662501-6666028 FORWARD
LENGTH=2346
Length=2346
Score = 3417 bits (1850), Expect = 0.0
Identities = 2207/2368 (93%), Gaps = 70/2368 (3%)
Strand=Plus/Plus
Query 1 CGTCGGGAACGTTTTTTCGTGGAAGAAGAAGAAG-AGCTCTCAACAAGCTCAACGACC-- 57
||| |||||||||||||| ||||||||||||||| || |||||||||||||||||||
Sbjct 1 CGTGGGGAACGTTTTTTCCTGGAAGAAGAAGAAGAAGAGCTCAACAAGCTCAACGACCAA 60
Query 58 AAAACTTCCGACACGAAGACtttttatttaatttcccct-ttttgatttttctt-ttttC 115
|||||||| ||||||||||||||||| || ||||| ||| ||||| ||||| || || |
Sbjct 61 AAAACTTCGGACACGAAGACTTTTTAATTCATTTCTCCTCTTTTG-TTTTT-TTCGTTCC 118
Query 116 TCGATACTCAAt-ctcttc-ttcttcttcttGGTGATCCTCATGACATAAATATACGATT 173
||| || || ||| || || ||||||| ||||||||||| | ||||| ||||||||
Sbjct 119 AAAATATTCGATACTC-TCGATC-TCTTCTTCGTGATCCTCATTAAATAAAAATACGATT 176
Query 174 TTTATTC--------T---TGCACCAAATTTTTTGACTTTGGATTAGCGTAGAAATCAAG 222
||||||| | ||||||||||||||||||||||||||||||||||| |||||
Sbjct 177 TTTATTCTTTTTTTGTGAGTGCACCAAATTTTTTGACTTTGGATTAGCGTAGAATTCAAG 236
Query 223 CACATTCTGGGTTTATTCGTGTATTAGTGGACATTGATTTTGTCAAAGCTACGtt-tttt 281
|||||||||||||||||||||||| ||| ||||||||||||||||||| | | || ||||
Sbjct 237 CACATTCTGGGTTTATTCGTGTATGAGTAGACATTGATTTTGTCAAAGTTGCATTCTTTT 296
Query 282 -tat-aaaaaagttgaatttccttttttcttttctctttagtcttttttatttttccttc 339
||| ||||||||| |||||||||||||||||||| ||| |||||||| ||||| ||
Sbjct 297 ATATAAAAAAAGTTTAATTTCCTTTTTTCTTTTCT-TTT-CTCTTTTTT-TTTTT--TT- 350
Query 340 ttcCCCATGTTATAGATTCTTAGATTCTCCCCCAAATTTTGAAGAAAGGAGAGAACTAAA 399
| ||||||||||||||||| | | |||||||||||||||||||||||||||||||
Sbjct 351 TCCCCCATGTTATAGATTC------T-T-CCCCAAATTTTGAAGAAAGGAGAGAACTAAA 402
Query 400 GAGTCCTTTTTGAGATTCTTTTGCTGCTGCTGTTGCTTGATTAGATCA--TTT-CG--T- 453
|||||||||||||||||||||||||||| | |||||||||||||||| ||| | |
Sbjct 403 GAGTCCTTTTTGAGATTCTTTTGCTGCTTCCCTTGCTTGATTAGATCATTTTTGTGATTC 462
Query 454 T-GA--TTCT--CGATTT--T-AAGCTTATTGGGATCTTATCTGATCCAGGATTTTCTCA 505
| || || | | ||| | |||||||||||||||||||||||| |||||||||||||
Sbjct 463 TGGATTTTGTGGGGGTTTCGTGAAGCTTATTGGGATCTTATCTGATTCAGGATTTTCTCA 522
Query 506 AGGCTACATTGCC-TATGAGCAGATAG-TTTGTTTAGGCATTATGGGTTGGTTTAACAAG 563
||||| ||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 523 AGGCTGCATTGCCGTATGAGCAGATAGTTTTATTTAGGCATTATGGGTTGGTTTAACAAG 582
Query 564 ATCTTTAAAGGCTCTAACCAAAGGCTCCGGGTGGGGAATAATAAGCACCATCACCATGTT 623
|||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||
Sbjct 583 ATCTTTAAAGGCTCTAACCAAAGGCTCCGGGTTGGGAATAATAAGCACAATCACAATGTT 642
Query 624 TATTACGATAATTATCCGACTGCTTCACATGATGATGAGCCTAGT---GCGGATACAGAT 680
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 643 TATTACGATAATTATCCGACTGCTTCACATGATGATGAGCCTAGTGCGGCGGATACAGAT 702
Query 681 GCTGATAATGATG-AGC-C-TCATACACAGGAACCATCTACCTCTGAGGATAATACATCC 737
||||||||||||| | | | |||||| |||||||||||||| |||||||||||||||||
Sbjct 703 GCTGATAATGATGAACCTCATCATACTCAGGAACCATCTACATCTGAGGATAATACATCG 762
Query 738 AATGACCAGGAAAATGAAGACATAGACCGTGCAATTGCATTGTCTCTTTTAGAAGAGAAT 797
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 763 AATGACCAGGAAAATGAAGACATAGACCGTGCAATTGCATTGTCGCTTTTAGAAGAGAAT 822
Query 798 CAAGAACAGACAAGTATAAGCGGGAAATACTCGACGCCGCCGGTGGATGAAGATGAGCAA 857
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 823 CAAGAACAGACAAGTATAAGCGGGAAATACTCGA---TGCCGGTGGATGAAGATGAGCAA 879
Query 858 CTTGCTAGAGCCCTACAAGAAAGTATGGTAGTTGGGAATTCACCACGTCACAAAAATGGA 917
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 880 CTTGCTAGAGCCCTACAAGAAAGTATGGTAGTTGGGAATTCACCCCGTCACAAAAGTGGA 939
Query 918 AGTACATATGATAATGGGAATGCATATGGGA-CTGGAGATATATATGGGAATGGACATAT 976
||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||
Sbjct 940 AGTACATATGATAATGGGAATGCATAT-GGAGCTGGAGATTTATATGGGAATGGACATAT 998
Query 977 GTATGGAGGAGGAAATGTATACGCAAATGGAGATATTTATTATCCAAGACCTATTACTTT 1036
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 999 GTATGGAGGAGGAAATGTATATGCAAATGGAGATATTTATTATCCAAGACCTATTACTTT 1058
Query 1037 TCAAATGGATTTTAGAATTTGTGCTGGCTGCAATATGGAGATTGGCCATGGAAGATTTCT 1096
|||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1059 TCAAATGGATTTCAGGATTTGTGCTGGCTGTAATATGGAGATTGGCCATGGAAGATTTCT 1118
Query 1097 GAATTGCCTTAATTCACTATGGCATCCAGAATGTTTTCGATGTTATGGCTGCAGTCAGCC 1156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1119 GAATTGCCTTAATTCACTATGGCATCCAGAATGTTTTCGATGTTATGGCTGCAGTCAGCC 1178
Query 1157 GATTTCTGAGTACGAGTTTTCAACATCAGGGAACTACCCTTTTCACAAGGCTTGTTACAG 1216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1179 GATTTCTGAGTACGAGTTTTCAACATCAGGGAACTACCCTTTTCACAAGGCTTGTTACAG 1238
Query 1217 GGAGAGATATCATCCAAAATGTGATGTCTGCAGCCACTTTATTCCAACAAATCATGCTGG 1276
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1239 GGAGAGATATCATCCTAAATGTGATGTCTGCAGCCACTTTATACCAACAAATCATGCTGG 1298
Query 1277 TCTTATTGAATATAGGGCACATCCTTTTTGGGTTCAAAAGTATTGCCCTTCTCACGAACA 1336
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1299 TCTTATTGAATATAGGGCACATCCTTTTTGGGTTCAGAAGTATTGTCCTTCTCACGAACA 1358
Query 1337 CGATACTACCCCAAGATGTTGCAGTTGTGAAAGAATGGAGCCACGGAATACGAGATATGT 1396
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1359 CGATGCTACCCCGAGATGTTGCAGTTGTGAAAGAATGGAGCCACGGAATACGAGATATGT 1418
Query 1397 TGAACTTAACGATGGACGGAAACTTTGCCTTGAGTGTTTGGACTCAGCGGTCATGGACAC 1456
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1419 TGAACTTAACGATGGACGGAAACTTTGCCTTGAGTGTTTGGACTCGGCGGTCATGGACAC 1478
Query 1457 CATGCAATGCCAACCTCTGTACTTGCAAATACAAGACTTCTATGAAGGACTTAACATGAA 1516
|||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||
Sbjct 1479 CATGCAATGCCAACCTCTGTACTTGCAAATACAAAATTTCTATGAAGGACTCAACATGAA 1538
Query 1517 GGTAGAGCAGGAAGTTCCACTCCTCTTGGTTGAGAGGCAAGCACTTAACGAAGCCAGAGA 1576
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1539 GGTAGAGCAGGAAGTTCCACTCCTCTTGGTTGAGAGACAAGCACTTAACGAAGCCAGAGA 1598
Query 1577 AGGTGAAAAGAATGGTCACTATCACATGCCAGAAACAAGAGGACTCTGCCTATCAGAAGA 1636
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1599 AGGTGAAAAGAATGGTCACTATCACATGCCAGAAACAAGAGGACTCTGCCTTTCAGAAGA 1658
Query 1637 ACAAACTGTTAGTACTGTAAGAAAGCGATCAAAGCATGGCACAGGAAATTGGGCTGGGAA 1696
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1659 ACAAACTGTTAGTACTGTAAGAAAGCGATCAAAGCATGGCACAGGAAAATGGGCCGGGAA 1718
Query 1697 TATTACAGAGCCTTACAAGTTGACACGGCAATGTGAAGTTACCGCCATTCTCATCTTATT 1756
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1719 TATTACAGAACCTTACAAGTTAACACGGCAATGTGAAGTTACCGCCATTCTCATCTTATT 1778
Query 1757 CGGGCTCCCTAGGTTACTTACTGGTTCGATTCTAGCTCATGAGATGATGCATGCGTGGAT 1816
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1779 CGGGCTCCCTAGGTTACTTACTGGTTCGATTCTAGCTCATGAGATGATGCATGCGTGGAT 1838
Query 1817 GAGGCTTAGAGGATTCCGAACACTGAGCCAAGACGTTGAAGAAGGTATATGTCAAGTGAT 1876
|||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1839 GAGGCTCAAAGGATTCCGAACACTGAGCCAAGATGTTGAAGAAGGTATATGTCAAGTGAT 1898
Query 1877 GGCTCATAAGTGGTTAGAAGCTGAGTTAGCTGCTGGTTCAACAAATAGCAATGCTGCATC 1936
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1899 GGCTCATAAATGGTTAGATGCTGAGTTAGCTGCTGGTTCAACAAATAGCAATGCTGCATC 1958
Query 1937 ATCATCCTCTTCTTCTCAAGGACTGAAAAAGGGACCGAGATCTCAGTACGAGAGAAAGCT 1996
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1959 ATCATCCTCCTCTTCTCAAGGACTGAAAAAGGGACCGAGATCTCAGTACGAGAGAAAGCT 2018
Query 1997 TGGTGAGTTTTTCAAGCACCAAATCGAGTCTGATGCTTCTCCGGTTTATGGAGACGGGTT 2056
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2019 TGGTGAGTTTTTCAAGCACCAAATCGAGTCTGATGCTTCTCCGGTTTATGGAGACGGGTT 2078
Query 2057 CAGGGCTGGGCGGTTAGCGGTTCAAAAATACGGTTTGCGAAAGACACTTGAGCATATACA 2116
||| |||||| ||||||| ||||| || |||||||||||||| |||||||||||||||||
Sbjct 2079 CAGAGCTGGGAGGTTAGCTGTTCACAAGTACGGTTTGCGAAAAACACTTGAGCATATACA 2138
Query 2117 GATGACCGGTAGATTCCCGGTTTAAGAACCCAAATGGACAAGGTCTTCTACTTTATTTAT 2176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2139 GATGACCGGTAGATTCCCGGTTTAAGAACCCAAATGGACAAGGTCTTCTACTTTATTTAT 2198
Query 2177 AGGATCCTTGGTAGATTATTGTTATATGCTCTA-TTCTTTTGGTGGAAATTGAACTGTCG 2235
|||||||||||||||||||| |||||||||||| ||||||||||||||| || ||| |||
Sbjct 2199 AGGATCCTTGGTAGATTATTATTATATGCTCTAATTCTTTTGGTGGAAAATGTACTCTCG 2258
Query 2236 ACCATATTCTTATGTGTAATC--ATTCGATGATTCTTTTGTATTTCTGTGTTAAAATCCA 2293
|||||||||||||||||| || ||||||||||||||| ||||| || ||||||||||||
Sbjct 2259 ACCATATTCTTATGTGTAGTCTCATTCGATGATTCTTT-GTATTCCTCTGTTAAAATCCA 2317
Query 2294 TCAGAATCAGATTCGGTGTTTTCTTTGT 2321
|||||||||||||| |||||||||||||
Sbjct 2318 TCAGAATCAGATTCAGTGTTTTCTTTGT 2345
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115210250775
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5