BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472150
Length=1028
Score E
Sequences producing significant alignments: (Bits) Value
AT1G23280.1 | Symbols: | MAK16 protein-related | chr1:8260865-... 1511 0.0
> AT1G23280.1 | Symbols: | MAK16 protein-related | chr1:8260865-8262772
REVERSE LENGTH=1034
Length=1034
Score = 1511 bits (818), Expect = 0.0
Identities = 970/1041 (93%), Gaps = 20/1041 (2%)
Strand=Plus/Plus
Query 1 CGACGACAGTTGCTCGCCGCCGTCCTTCACAGc-t-t-cttcttc---ttcttctctCAT 54
|||||||||||| ||| |||||||||| ||||| | | ||||||| |||||| |||||
Sbjct 1 CGACGACAGTTGATCGGCGCCGTCCTTGACAGCTTCTCCTTCTTCTTTTTCTTCACTCAT 60
Query 55 AAACCCTAAAATATC-CCTCGAAAGCTAAACTCTTTA-CCAGATTTCAAGCTTCACCTTG 112
|||||||||| | || || |||||||||||| ||||| | | |||||||||||||| |
Sbjct 61 AAACCCTAAAGTCTCGCC-CGAAAGCTAAACCCTTTAGCTA-TTTTCAAGCTTCACCGGG 118
Query 113 AAAGATGCAACACGATGAGGTTATATGGCAGGTCATCAGGCACAAGCACTGCAGTTACAT 172
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 119 AAAGATGCAACACGATGAGGTTATATGGCAGGTCATTAGGCACAAGCACTGTAGTTACAT 178
Query 173 GGCCAAAATCGAGACTGGAATCTTCTGCAGAAACCAATATAACGTAACCGGAATCTGTAA 232
|||||||||||| ||||||||||| ||||||||||||||||| ||||| |||||||||||
Sbjct 179 GGCCAAAATCGAAACTGGAATCTTTTGCAGAAACCAATATAATGTAACAGGAATCTGTAA 238
Query 233 TCGAAGCTCTTGCCCTCTTGCCAATAGCCGATACGCCACTATCCGAGACCATGATGGAGT 292
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 239 TCGAAGCTCTTGCCCTCTTGCTAATAGCCGATACGCCACTATCCGTGACCATGATGGAGT 298
Query 293 GTTTTATTTATATATGAAGACTATTGAGAGAGCTCACATGCCAAAGAACTTGTGGGAGAG 352
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 299 GTTTTATTTATATATGAAGACTATTGAGAGAGCTCACATGCCAAATAAATTGTGGGAGAG 358
Query 353 AGTTAAGCTGCCTGTTAACTATGAGATGGCTCTTGAAATGATTGACAAACACTTGTTGTA 412
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 359 AGTTAAGCTGCCTGTAAACTATGAGAAGGCTCTTGAAATGATTGACAAACACTTGTTGTA 418
Query 413 CTGGCCCAAGTTGTTGCAGCATAAGGTTAAACAAAGACTGACTAAAATGACTCAGATGCG 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 CTGGCCCAAGTTGTTGCAGCATAAGGTTAAACAAAGACTGACTAAAATGACTCAGATGCG 478
Query 473 TATTCGTATGAGGAAACTTGCTCTGAAAACAAGGGAGGTAGTAGTCCCTAGGCCTAGGAG 532
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 479 TATTCGTATGAGGAAACTTGCTCTGAAAACAAGGGAGGTAGTAGTCACTACGCCTAGGAG 538
Query 533 GCAAATAAAGAGGGAGTTAAGAAGAGAGGATAAGGCTA-AAATAGCAGCTCAGTTGGATA 591
||||||||||||||||| ||||||||||| ||||||| ||| |||||||||||||||||
Sbjct 539 GCAAATAAAGAGGGAGTCGAGAAGAGAGGAAAAGGCTATAAA-AGCAGCTCAGTTGGATA 597
Query 592 AGGCTATTGAAAACGAGTTGATGGAACGTTTGAAGACAGGCATTTACCCTACTGACATAT 651
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 598 AGGCTATTGAAACCGAGTTGATGGAACGTTTGAAGAAAGGCATTTACCCTACTGAAATAT 657
Query 652 ACAATTTCTC--ACAGCGTGCGTTTGACAAACTTATTAATAAAGAAATCGAA-CTCAACC 708
||||||| || |||| ||| ||| ||||||| || ||| |||||||||| | ||||
Sbjct 658 ACAATTTATCTGACAGTGTG--TTTAACAAACTGCTTGATAGAGAAATCGAAAC-CAACG 714
Query 709 AAGAAGTTGAGGAAGAAGAGGAGGAGGAAGGAGTGGTTGAATATGTTGAAGGCGATGATG 768
| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 715 ACGAAGTTGAGAAAGAAGAGGAGGAGGAAGGAGTGATTGAATATGTTGAAGGCGATGATG 774
Query 769 AACTCGAAGCAGAGGAAGAAGAAGACATGGAAGACTTCTCTGGTCTTCCATCTAAGGAGT 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 AACTCGAAGCAGAGGAAGAAGAAGACATGGAAGACTTCTCTGGTCTTCCATCTAAGGAGT 834
Query 829 CTTATCTTGAAGGTGATGATCATGACTCAGATGACGAGGA-GAACGATGATGCTGAAGAA 887
|||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 835 CTTACCTTGAAGGTGATGATCATGACTCAGATGACGAGGATGA-CGATGATGCTGAAGAA 893
Query 888 CAAGTTGTGATTCATAAAAAAGGAAGGGTTTTAAAGAAGTCTGATGATAACGGAAAAGCA 947
|||||||||||||||||||| ||||| | ||||||||||||||||||||| |||||||||
Sbjct 894 CAAGTTGTGATTCATAAAAAGGGAAGAGCTTTAAAGAAGTCTGATGATAATGGAAAAGCA 953
Query 948 AAGAAGAAATCAAGAGTAGTTGTTGAGGTTGAGCAAGAAGATGGAGACACAAGGAGATCC 1007
||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 954 AAGAAGAAACCAAGAGTAGTTGTTGAGGTTGAGCAAGAAGATGCAGACACAAGAAGATCC 1013
Query 1008 CTGAAAAGCCTTAAACTTTGA 1028
||||||||||||||| |||||
Sbjct 1014 CTGAAAAGCCTTAAAATTTGA 1034
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50384849441
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5