BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472152
Length=1437
Score E
Sequences producing significant alignments: (Bits) Value
AT1G19300.1 | Symbols: GATL1, PARVUS, GLZ1, ATGATL1 | Nucleotid... 1962 0.0
AT3G50760.1 | Symbols: GATL2 | galacturonosyltransferase-like 2... 300 3e-80
> AT1G19300.1 | Symbols: GATL1, PARVUS, GLZ1, ATGATL1 | Nucleotide-diphospho-sugar
transferases superfamily protein | chr1:6671137-6672653
REVERSE LENGTH=1517
Length=1517
Score = 1962 bits (1062), Expect = 0.0
Identities = 1303/1411 (92%), Gaps = 50/1411 (4%)
Strand=Plus/Plus
Query 1 TTTGTTAATTTTCCTCTCTCTTacacacacacacacaTGATAAAAAGTCTTTAGAGACAG 60
||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 13 TTTTTTAATTTTCCTCTCTCTT----ACACACACACATGATAAAAAGTGTTTAGAGACAG 68
Query 61 CTCTTCTCTTCATGTTTCTCAATTCTCAGTTTGAGAGAAACAAAACCTTCCAATACAATC 120
||||||||||| | | |||||||||||||||||||||||||||||||||||| |
Sbjct 69 CTCTTCTCTTC-----T-T--GTTCTCAGTTTGAGAGAAACAAAACCTTCCAATACAACC 120
Query 121 AGAGAGTCGTCTGAGAAGAAAGAAAGAAACCATGTCCCAACAtcttcttcttcttctcat 180
||||||||| | |||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 121 AGAGAGTCGAC---GAAG-AAGAAAGAAACCATGTCCCAACA---TCTTCTTCTTCTCAT 173
Query 181 tctcctctcacttcttcttcttcATAATCCCATTTCCGCCTCTCCAATTATTCAAAAATT 240
||||||||| || |||||||||||||| |||||||||||| || ||||||||||||||||
Sbjct 174 TCTCCTCTCGCTACTTCTTCTTCATAAACCCATTTCCGCCACTACAATTATTCAAAAATT 233
Query 241 CAAAGAAGCCCCACAGTTTTACAATTCGGCAGATTGCCCCCCAATCGATGA---C---TC 294
||||||||||||||||||||||||||| |||||||||||| ||||||||| | ||
Sbjct 234 CAAAGAAGCCCCACAGTTTTACAATTCTGCAGATTGCCCCTTAATCGATGACTCCGAGTC 293
Query 295 CGACGATGACGTGGCCGCCAAACCAATCATCTGCTCCCGCCGAGCTGTCCACGTGGCGAT 354
|||||||||||||| ||||||||||||| ||||||| || ||||||||||||||||||||
Sbjct 294 CGACGATGACGTGGTCGCCAAACCAATCTTCTGCTCACGTCGAGCTGTCCACGTGGCGAT 353
Query 355 GACACTCGACGCCGCCTACATTCGCGGTTCAGTCGCCGCCGTTCTCTCCGTCCTCCAACA 414
|||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||
Sbjct 354 GACACTCGACGCCGCCTACATTCGTGGCTCAGTCGCCGCTGTTCTCTCCGTCCTCCAACA 413
Query 415 CTCTTCTTGCCCTGAAAACATTGTTTTCCACTTCGTCGCCTCTGCTTCCGCCGACGCGTC 474
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 414 CTCTTCTTGTCCTGAAAACATTGTTTTCCACTTCGTCGCCTCTGCTTCCGCCGACGCTTC 473
Query 475 TTCCTTACGCGCCACCATCTCCTCCTCTTTCCCTTACCTTGATTTCACCGTCTACGTCTT 534
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 474 TTCCTTACGAGCCACCATATCCTCCTCTTTCCCTTACCTTGATTTCACCGTCTACGTCTT 533
Query 535 CAACGTCTCCTCCGTCTCTCGCCTTATCTCCTCCTCTATCCGCTCCGCACTAGACTGTCC 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 CAACGTCTCCTCCGTCTCTCGCCTTATCTCCTCCTCTATCCGCTCCGCACTAGACTGTCC 593
Query 595 TTTAAACTACGCAAGAAGCTACCTCGCTGATCTCCTCCCTCCATGCGTCCGCCGCGTCGT 654
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 594 TTTAAACTACGCAAGAAGCTACCTCGCCGATCTCCTCCCTCCCTGCGTCCGCCGCGTCGT 653
Query 655 CTACCTAGACTCCGATCTAATCCTCGTCGACGACATCGCAAAACTCGCCGCCACAGATCT 714
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 654 CTACCTAGACTCCGATCTGATCCTCGTCGACGACATAGCAAAACTCGCCGCCACAGATCT 713
Query 715 CGGCCGTGATTCAGTCCTCGCCGCGCCGGAATACTGCAACGCCAATTTCACTTCATACTT 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 CGGCCGTGATTCAGTCCTCGCCGCGCCGGAATACTGCAACGCCAATTTCACTTCATACTT 773
Query 775 CACATCAACCTTCTGGTCAAATCCGACTCTCTCTTTAACCTTCGCCGATAGAAAAGCTTG 834
|||||||||||||||||| |||||||||||||||||||||||||||||| | ||||| ||
Sbjct 774 CACATCAACCTTCTGGTCTAATCCGACTCTCTCTTTAACCTTCGCCGATCGGAAAGCATG 833
Query 835 CTACTTCAACACCGGAGTCATGGTGATCGATCTCTCGCGGTGGCGCGGAGGCGCGTACAC 894
|||||||||||| |||||||||||||||||||| || |||||||||| ||||||||||||
Sbjct 834 CTACTTCAACACTGGAGTCATGGTGATCGATCTTTCCCGGTGGCGCGAAGGCGCGTACAC 893
Query 895 GTCACGCATCGAAGAGTGGATGGCGATGCAAAAGAGAATGAGAATTTACGAGCTTGGTTC 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 GTCACGCATCGAAGAGTGGATGGCGATGCAAAAGAGAATGAGAATTTACGAGCTTGGTTC 953
Query 955 GTTACCACCGTTTTTGCTGGTTTTCGCCGGTTTGATTAAACCGGTAAATCATCGATGGAA 1014
||||||||||||||| ||||||| |||||||||||||||||||| |||||||| |||||
Sbjct 954 GTTACCACCGTTTTTATTGGTTTTTGCCGGTTTGATTAAACCGGTTAATCATCGGTGGAA 1013
Query 1015 CCAGCACGGTTTAGGAGGTGATAATTTCAGAGGACTATGCAGAGATCTGCACCCTGGTCC 1074
||| |||||||||||||||||||||||||||||||| || |||||||| || ||||||||
Sbjct 1014 CCAACACGGTTTAGGAGGTGATAATTTCAGAGGACTGTGTAGAGATCTCCATCCTGGTCC 1073
Query 1075 GGTGAGTCTGTTGCATTGGAGTGGGAAAGGTAAGCCATGGGCTAGGCTTGACGCTGGTCG 1134
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1074 GGTGAGTCTGTTGCATTGGAGTGGGAAAGGTAAGCCATGGGCTAGGCTTGATGCTGGTCG 1133
Query 1135 GCCTTGTCCTTTAGACGCGCTTTGGGCTCCGTATGATCTTCTTCAAACGCCTTTCGCGCT 1194
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 1134 GCCTTGTCCTTTAGACGCGCTTTGGGCTCCGTATGATCTTCTTCAAACGCCGTTCGCGTT 1193
Query 1195 GGATTCTTAACCAGTCTCG---G-TTTACTTATATTATTA-TACCGGTACATA--TC-AT 1246
|||||||| |||||||||| | ||||||||| | |||| |||||||||||| | ||
Sbjct 1194 GGATTCTTGACCAGTCTCGATCGGTTTACTTAT-T-ATTAATACCGGTACATACATATAT 1251
Query 1247 A---TATACAGGTGAttttttgtttttACTGTACATCGATTCGTAAATCATACTATAACC 1303
| ||||||||||| ||||||||||||||||||||||||||||||||||||| | | ||
Sbjct 1252 ACAATATACAGGTGAATTTTTGTTTTTACTGTACATCGATTCGTAAATCATAC-A-A-CC 1308
Query 1304 GAAGGaaaaaaaaaaaCATTTTGCTTTT-G-TTCC-TT-GTTG--GTTT-CATCGGTTTT 1356
|||| || |||||||||||||||||||| | || || |||| |||| ||| ||||||
Sbjct 1309 GAAG-AAGAAAAAAAACATTTTGCTTTTTGCTTTTGTTCGTTGTTGTTTTCATTGGTTTT 1367
Query 1357 GTTTTGGAGTATAGCAGAGAATA-ATAAAAA 1386
|||||||||||||| |||||||| | |||||
Sbjct 1368 GTTTTGGAGTATAGAAGAGAATATACAAAAA 1398
> AT3G50760.1 | Symbols: GATL2 | galacturonosyltransferase-like
2 | chr3:18868065-18869384 FORWARD LENGTH=1320
Length=1320
Score = 300 bits (162), Expect = 3e-80
Identities = 642/865 (74%), Gaps = 67/865 (8%)
Strand=Plus/Plus
Query 342 TCCACGTGGCGATGACAC-TCGACGCCGCCTACATTCGCGGTTCAGTCGCCGCCG-TTCT 399
|||||||||| ||||| | | ||| | || ||| | || || ||| | |||| | ||||
Sbjct 167 TCCACGTGGCAATGAC-CTTAGACACAGCTTACCTCCGTGGCTCAATGGCCG-TGATTCT 224
Query 400 CTCCGTCCTCCAACACTCTTCTTGCCCTGAAAACATTGTTTTCCACTTCGTCGCCTCTG- 458
|||||||||||||||||||||||| ||| ||||||||||||||||||||||| | ||
Sbjct 225 CTCCGTCCTCCAACACTCTTCTTGTCCTCAAAACATTGTTTTCCACTTCGTCACTTCAAA 284
Query 459 -CTTCCGCCGACGCGTCTTCCTTACGCGCCACCATCTCCTCCTCTTTCCCTTACCTTGAT 517
| ||| || || || || | | | | | | || || ||||||| || ||||
Sbjct 285 ACAAA-GCC-AC-CGACT-CCAAAA-CTACGTCGT-TGCTTCT-TTTCCCT-AC-TTGAA 335
Query 518 -TTCACCG--TCTACGTCTT-CAACGTCTCCTCCGTCTCTCG-CCTTATCTCCTCCTCTA 572
||| | | | ||| ||| | |||| || || |||| || ||| ||||| |||| |
Sbjct 336 ATTC-C-GAATTTACC-CTTACGACGTAGCCGCCATCTC-CGGCCTCATCTCAACCTCCA 391
Query 573 TCCGCTCCGCACTAGACTGTCCTTTAAACTACGCAAGAAGCTACCTCGCTGATC-TCCT- 630
|||||||||| ||||||| ||| ||||||||||||||| ||||||||| || | | ||
Sbjct 392 TCCGCTCCGCGCTAGACTCTCCGCTAAACTACGCAAGAAACTACCTCGCCGA-CATTCTT 450
Query 631 CCCTCCATGCGTC-CGCCGCGTCGTCTACCTAGACTCCGATCTAATCCTCGTCGACGACA 689
||| | ||| || | | | ||||| ||||||||||| ||||| || |||||||| ||||
Sbjct 451 CCCACG-TGCCTCTCAC-GTGTCGTATACCTAGACTCAGATCTCATACTCGTCGATGACA 508
Query 690 TCGCAAAACTCGCCGCCAC--AGATCTCGGCCGT-GATTCAGTCCTCGCCGCGCCGGAAT 746
|| | || ||| | |||| | ||| | ||| | | | || | |||||||| || |
Sbjct 509 TCTCCAAGCTCTTCTCCACTCACATCCCTACCGACG-T-C-GTTTTAGCCGCGCCTGAGT 565
Query 747 ACTGCAACGCCAATTTCACTTCATACTTCACATCA-ACCTTCTGGTCAAATCCGACTCTC 805
|||||||||| || ||||| | ||||| || || || || |||||||| || |||||
Sbjct 566 ACTGCAACGCAAACTTCACGACTTACTTTAC-TCCGACGTTTTGGTCAAACCCTTCTCTC 624
Query 806 TCTTTAAC-CT-TCGC-CGATAGAAAAGCT------TGCTACTTCAACACCGGAGTCATG 856
|| | || || || | | | | ||| || ||||||||||||||||| |||
Sbjct 625 TCCATCACACTATCCCTCAACCGCCGTGCTACACCGTGTTACTTCAACACCGGAGTGATG 684
Query 857 GTGATCGA-TCTCTCGCGGTGGCGCGGAGGCGCGTACACGTC-ACGCATCGA-AGAGTGG 913
|| ||||| | | | ||||| | ||| | |||||| | | ||| | |||||||
Sbjct 685 GTCATCGAGT-TAAAGAAATGGCGAGAAGGAGATTACACGAGGAAG-ATC-ATAGAGTGG 741
Query 914 ATGGCGATGCAAAAGA-GAATGAGAATTTACGAGCTT-GGTTCGTTACCACCGTTTTTGC 971
|||| | | ||||| | | || ||||| |||||| || || || |||||||||||||| |
Sbjct 742 ATGGAGTTACAAAA-ACGGATAAGAATCTACGAG-TTAGGCTCTTTACCACCGTTTTTAC 799
Query 972 TGGTTTTCGCCGGTTTGATTAAA-CCGGTAAATCATCGATGGAACCAGCACGGTTTAGGA 1030
| || |||||||| || | |||||| |||| || |||||||| ||||||||||||
Sbjct 800 TTGTCTTCGCCGGAAACAT-AGCTCCGGTAGATCACCGGTGGAACCAACACGGTTTAGGA 858
Query 1031 GGTGATAATTTCAGAGGACTATG-CAGAGATCTGCACCCTGGTCCGGTGAGTCTGTTGCA 1089
|| |||||||| |||||||| || | ||||| |||| || ||||| |||||| |||||||
Sbjct 859 GGAGATAATTTTAGAGGACTGTGTC-GAGATTTGCATCCAGGTCCAGTGAGTTTGTTGCA 917
Query 1090 TTGGAGTGGGAAAGGTAAGCCATGGGCTA-GGCTT-GACGCTGGTCGGCCTTGTCCT-TT 1146
||||||||||||||| |||||||||| || || || || | |||||| ||||| || ||
Sbjct 918 TTGGAGTGGGAAAGGGAAGCCATGGG-TAAGG-TTAGATGATGGTCGACCTTGCCCGCTT 975
Query 1147 AGACGCGCTTTGGGCTCCGTATGAT 1171
|| || ||||||| ||| ||||||
Sbjct 976 -GATGCACTTTGGGTTCCATATGAT 999
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70832968995
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5