BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472154
Length=799
Score E
Sequences producing significant alignments: (Bits) Value
AT1G19320.1 | Symbols: | Pathogenesis-related thaumatin superf... 1031 0.0
AT2G24810.1 | Symbols: | Pathogenesis-related thaumatin superf... 289 3e-77
AT1G75030.1 | Symbols: ATLP-3, TLP-3 | thaumatin-like protein 3... 198 6e-50
AT1G77700.1 | Symbols: | Pathogenesis-related thaumatin superf... 54.7 1e-06
> AT1G19320.1 | Symbols: | Pathogenesis-related thaumatin superfamily
protein | chr1:6679281-6680252 FORWARD LENGTH=864
Length=864
Score = 1031 bits (558), Expect = 0.0
Identities = 712/786 (91%), Gaps = 12/786 (2%)
Strand=Plus/Plus
Query 2 AACAATGGCGATTTTCTCCAAATTACATCTTCTCTTTTTCTCCTTCATCATAGCCACATG 61
|||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||
Sbjct 43 AACAATGGCGATTTTCTCCACATCACATCTTCTCTTCATCTCCTTCATCATAGCCACATG 102
Query 62 TATAATTTCTGTCTCCGGCACCGA-CTTCACCTTAACAAACCACTGCAGCTCCACCATCT 120
|| ||||||||||||||| | | | |||||||||||||||||| ||| ||||||| ||||
Sbjct 103 TACAATTTCTGTCTCCGGTA-CAACCTTCACCTTAACAAACCATTGCGGCTCCACAATCT 161
Query 121 GGCCTGGAATCCTCACCGCAAACGGCACACCAA-TCGGCGACGGCGGTTTTGCCTTAGCC 179
|||||||||||||||||||||||||| || ||| ||||||||||||| |||||||||||
Sbjct 162 GGCCTGGAATCCTCACCGCAAACGGCGCA-CAACTCGGCGACGGCGGATTTGCCTTAGCT 220
Query 180 GCAGGCTCTTCCGTCACCTTAACCGTTTCTCCTGGCTGGTCCGGTCGATTCTGGGGTAGA 239
|||| |||||||| ||||| ||||||||||| || |||||||||||||| |||| | ||
Sbjct 221 TCAGGATCTTCCGTAACCTTCACCGTTTCTCCAGGTTGGTCCGGTCGATTTTGGGCTCGA 280
Query 240 ACGGGCTGCAACTTCGACGCATCCGGTTCCGGAAAATGCACCACCGGAGACTGCGGCGGT 299
||| || ||||||||||| || || || || |||||| ||||| ||||||||| |
Sbjct 281 ACGTATTGTAACTTCGACGCCTCAGGCTCAGGTAAATGCGGTACCGGGGACTGCGGCAGC 340
Query 300 AAGTTAAAATGCGCCGGCGCAGGAGGAGCTCCACCAGCCACACTCGCAGAATTCACAATC 359
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 341 AAGTTAAAATGCGCCGGCGCAGGAGGAGCTCCACCAGCCACACTCGCCGAATTCACAATC 400
Query 360 GGCTCATCCGGAAAGAAAAACGCAGTGCAAGATTTCTACGACGTGAGCCTCGTCGACGGT 419
||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| || |||
Sbjct 401 GGCTCCTCCGGAAAGAAAAACGCCGTGCAAGATTTTTACGACGTGAGCCTCGTAGATGGT 460
Query 420 TACAACGTTCAGATGAAAATCACACCGCAAGGTGGCTCAGGCAATTGTCAAACCGCGGGA 479
|| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 461 TATAACGTTCAGATGAAAATCACACCGCAAGGTGGCTCAGGGGATTGTAAAACCGCGGGA 520
Query 480 TGCGTTTCGGACGTGAACGCGATTTGTCCAAACGAGCTACGCGTTACGGACGCCG-CGGG 538
|||||||||||||||||||||||||||||||| ||||||| ||||||| | || ||||
Sbjct 521 TGCGTTTCGGACGTGAACGCGATTTGTCCAAAAGAGCTACAAGTTACGGGC-CCATCGGG 579
Query 539 TGTTGTGGCGTGTAAGAGTGCTTGTGAGGCTTTTAATAAGCCGGAGTATTGTTGCACCGG 598
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 580 TGTTGCAGCGTGTAAGAGTGCTTGTGAGGCTTTTAACAAGCCGGAGTATTGTTGCACCGG 639
Query 599 CGCGTATAGTACACCGGCTACTTGTCCGCCGACGAATTACTCGAAGATATTTAAACAAGC 658
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 640 CGCGTATAGTACACCGGCGACTTGTCCGCCCACGAATTACTCGAAGATATTTAAACAAGC 699
Query 659 TTGTCCAAGTGCGTATAGCTATGCATACGATGATGCTTCGAGTACTTTTACTTGTACTAA 718
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 700 TTGTCCGAGTGCGTATAGCTATGCATACGATGATGCTTCCAGTACTTTTACTTGTACTAA 759
Query 719 TGCTAATTATGTGATCAGTTTCTGTTCTTAGACATAA--CAGCCTTTATTAATT-ATTA- 774
||||||||||| ||||||||||||||||||| || || | |||||||||| || ||||
Sbjct 760 TGCTAATTATGAGATCAGTTTCTGTTCTTAGGCAAAAATC-GCCTTTATTA-TTCATTAA 817
Query 775 TTATTA 780
||||||
Sbjct 818 TTATTA 823
> AT2G24810.1 | Symbols: | Pathogenesis-related thaumatin superfamily
protein | chr2:10573862-10574699 FORWARD LENGTH=582
Length=582
Score = 289 bits (156), Expect = 3e-77
Identities = 212/239 (89%), Gaps = 4/239 (2%)
Strand=Plus/Plus
Query 513 GAGCTACGCGTT-ACGGACGCCGCGGGTGTTGTGGCGTGTAAGAGTGCTTGTGAGGCTTT 571
|||||||||||| |||| | | |||||||||||||||||||||||||||||||||||||
Sbjct 346 GAGCTACGCGTTAACGG-CTCATCGGGTGTTGTGGCGTGTAAGAGTGCTTGTGAGGCTTT 404
Query 572 TAATAAGCCGGAGTATTGTTGCACCGGCGCGTAT-AGTACACCGGCTACTTGTCCGCCGA 630
||| || ||||||||||||||||||||||| | | |||| ||||| ||||| |||||||
Sbjct 405 TAACAAACCGGAGTATTGTTGCACCGGCGCTT-TCAGTAAACCGGAGACTTGCCCGCCGA 463
Query 631 CGAATTACTCGAAGATATTTAAACAAGCTTGTCCAAGTGCGTATAGCTATGCATACGATG 690
|||| |||||||||||||||||| ||||||||| | |||||||||||||| ||||||
Sbjct 464 CGAAATACTCGAAGATATTTAAAGGAGCTTGTCCCACTGCGTATAGCTATGTGTACGATT 523
Query 691 ATGCTTCGAGTACTTTTACTTGTACTAATGCTAATTATGTGATCAGTTTCTGTTCTTAG 749
|||||||||||| ||||| ||||||| |||||||||||| ||||||||||||||||||
Sbjct 524 ATGCTTCGAGTAGATTTACATGTACTAGTGCTAATTATGTTATCAGTTTCTGTTCTTAG 582
> AT1G75030.1 | Symbols: ATLP-3, TLP-3 | thaumatin-like protein
3 | chr1:28174378-28175383 FORWARD LENGTH=909
Length=909
Score = 198 bits (107), Expect = 6e-50
Identities = 510/696 (73%), Gaps = 62/696 (9%)
Strand=Plus/Plus
Query 75 TCCGGCACCG-ACTTCACCTTAACAAACCA-CTGCAGC-TCCACCATCTGGCCTGGAATC 131
|||| ||||| | |||| ||| ||||| || || || | |||| | ||||| |||| |
Sbjct 104 TCCGCCACCGTA-TTCA-CTTTACAAAACAGTTG-TGCGTACACCGTTTGGCCGGGAA-C 159
Query 132 -CTCACC-GCAAACGGCA-CACCAATCGGCGACGGCGGTTTTGCCTTAGC-CGCAGGCTC 187
||| || || ||| ||| |||| ||||||||||||| ||| ||||| | | ||||| |
Sbjct 160 TCTCTCCGGC-AACAGCATCACC-CTCGGCGACGGCGGATTTCCCTTAACTC-CAGGCGC 216
Query 188 TTCCGT-CACCTTAACCGTTTCT-CCTGGCTGGTCCGGTCGATTCTGGGGTAGAACGGGC 245
|||||| || | | || | | || || || ||||| || || ||||||| | | || |||
Sbjct 217 TTCCGTGCAGC-TCACGGCTCCTACC-GGTTGGTCAGGCCGGTTCTGGGCTCGTACCGGC 274
Query 246 TGCAACTTCGACGCATCCGGTTC-CGGAAAATGCACCACCGGAGACTGCGGCGGTAAGTT 304
|||||||| ||||| ||||| || ||| | ||| |||||||||||||||||| ||
Sbjct 275 TGCAACTTTGACGCCTCCGG-TCACGGTACCTGCGTCACCGGAGACTGCGGCGGCGTTTT 333
Query 305 AAAATGCGCCGGCGCAGGAGGAGCTCCACCAGCCACACTCGCAGAATTCACAATCGGCTC 364
|||||| || | || || |||| ||| ||||| || || || |||||||| | ||
Sbjct 334 AAAATGTACC-G-GC-GGCGGAGTTCCTCCAGCGACTCTAGCGGAATTCACCGT-GG--G 387
Query 365 ATCCGGAAAGAAAAACGCAGTGCA-AGATTTCTACGACGTGAGCCTCGTCGACGGTTACA 423
|| | ||| || || | ||| ||||||||||||||||||||||||||||||||||
Sbjct 388 AT-C---AAG--CAATGCCG-GCATGGATTTCTACGACGTGAGCCTCGTCGACGGTTACA 440
Query 424 ACGTTCAGATGAAAATCACACCGCAAGGTGGCT-CAGGCAATTGTCAAAC-CGCGGGATG 481
| || ||||| || | ||| || || || | | || ||||| |||| ||| || ||
Sbjct 441 ATGTAAAGATGGGGATAAAACCACAGGGAGGATTC-GGAAATTG-CAAATACGCAGGCTG 498
Query 482 CGTTTCGGACGTGAACGCGATTTGTCCAAACGAGCT-ACGCGTT-ACGGACGCCG----C 535
||| |||||| | |||| |||||| || | |||||| | | | | | ||| ||| |
Sbjct 499 CGTCTCGGACATCAACGAGATTTGCCCTAGCGAGCTTA-G-GATCATGGAT-CCGAATTC 555
Query 536 GGGT-GT-T-GTGGCGTGTAAGAGTGCTTGTGAGGCTTTTAATAAGCCGGAGTATTGTTG 592
||| || | | |||||||||||| ||||| | ||| |||| | |||||| | ||| ||
Sbjct 556 GGGAAGTGTCGCGGCGTGTAAGAGCGCTTGCGCGGCGTTTAGTTCGCCGGAATTTTGCTG 615
Query 593 CACCGGCGCGT-ATA-GTACACCGGCTA-CTTGTCCGCCGACGAATTACTCGAAGATATT 649
|| || || | | | || ||| | | ||||| | |||||| |||||||| || ||
Sbjct 616 TACTGGTGC-TCACGCG-ACGCCG-CAAACTTGTTCTCCGACGTATTACTCGTCCATGTT 672
Query 650 TAAACAA-GCTTGTCCAAGTGCGTATAGCTATGCATACGATGATGCTTCGAGTACTTTTA 708
||| || |||||||| || || ||||| || || ||||| || || ||||| ||||| |
Sbjct 673 TAAG-AACGCTTGTCCTAGCGCTTATAGTTACGCTTACGACGACGCATCGAGCACTTTCA 731
Query 709 CTTGTACTA-ATGCTAATTA-TGTGATCAGTTTCTG 742
||||||| || |||| || | |||||| ||||||
Sbjct 732 CTTGTACCGGAT-CTAACTACT-TGATCACTTTCTG 765
> AT1G77700.1 | Symbols: | Pathogenesis-related thaumatin superfamily
protein | chr1:29204747-29206217 FORWARD LENGTH=1071
Length=1071
Score = 54.7 bits (29), Expect = 1e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 390 GATTTCTACGACGTGAGCCTCGTCGACGG 418
|||||||||||||||||||||||||||||
Sbjct 544 GATTTCTACGACGTGAGCCTCGTCGACGG 572
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38881229778
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5